Strain Fitness in Pseudomonas sp. DMC3 around GFF485

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF483 and GFF484 are separated by 93 nucleotidesGFF484 and GFF485 are separated by 111 nucleotidesGFF485 and GFF486 are separated by 10 nucleotidesGFF486 and GFF487 are separated by 298 nucleotides GFF483 - hypothetical protein, at 532,754 to 533,290 GFF483 GFF484 - hypothetical protein, at 533,384 to 533,629 GFF484 GFF485 - N5-carboxyaminoimidazole ribonucleotide synthase, at 533,741 to 534,823 GFF485 GFF486 - N5-carboxyaminoimidazole ribonucleotide mutase, at 534,834 to 535,325 GFF486 GFF487 - HTH-type transcriptional regulator YjiE, at 535,624 to 536,532 GFF487 Position (kb) 533 534 535Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 532.756 kb on - strandat 532.804 kb on - strandat 532.804 kb on - strandat 532.872 kb on + strand, within GFF483at 532.872 kb on + strand, within GFF483at 532.873 kb on - strand, within GFF483at 532.873 kb on - strand, within GFF483at 532.873 kb on - strand, within GFF483at 532.873 kb on - strand, within GFF483at 532.873 kb on - strand, within GFF483at 532.873 kb on - strand, within GFF483at 532.876 kb on + strand, within GFF483at 532.876 kb on + strand, within GFF483at 532.876 kb on + strand, within GFF483at 533.076 kb on + strand, within GFF483at 533.076 kb on + strand, within GFF483at 533.076 kb on + strand, within GFF483at 533.077 kb on - strand, within GFF483at 533.077 kb on - strand, within GFF483at 533.250 kb on + strandat 533.406 kb on + strandat 533.406 kb on + strandat 533.407 kb on - strandat 533.407 kb on - strandat 533.407 kb on - strandat 533.407 kb on - strandat 533.407 kb on - strandat 533.472 kb on + strand, within GFF484at 533.472 kb on + strand, within GFF484at 533.472 kb on + strand, within GFF484at 533.472 kb on + strand, within GFF484at 533.472 kb on + strand, within GFF484at 533.473 kb on - strand, within GFF484at 533.473 kb on - strand, within GFF484at 533.496 kb on + strand, within GFF484at 533.497 kb on - strand, within GFF484at 533.497 kb on - strand, within GFF484at 533.650 kb on + strandat 533.650 kb on + strandat 533.650 kb on + strandat 533.650 kb on + strandat 533.650 kb on + strandat 533.651 kb on - strandat 533.651 kb on - strandat 533.651 kb on - strandat 533.654 kb on + strandat 533.654 kb on + strandat 533.654 kb on + strandat 533.654 kb on + strandat 533.654 kb on + strandat 533.654 kb on + strandat 533.655 kb on - strandat 533.655 kb on - strandat 533.655 kb on - strandat 533.655 kb on - strandat 533.655 kb on - strandat 533.655 kb on - strandat 533.655 kb on - strandat 534.114 kb on + strand, within GFF485at 534.115 kb on - strand, within GFF485at 534.115 kb on - strand, within GFF485at 534.234 kb on + strand, within GFF485at 534.235 kb on - strand, within GFF485at 534.235 kb on - strand, within GFF485at 534.567 kb on + strand, within GFF485at 534.842 kb on + strandat 534.842 kb on + strandat 534.842 kb on + strandat 534.843 kb on - strandat 534.843 kb on - strandat 534.843 kb on - strandat 535.256 kb on + strand, within GFF486at 535.367 kb on - strandat 535.367 kb on - strandat 535.367 kb on - strandat 535.444 kb on - strandat 535.444 kb on - strandat 535.444 kb on - strandat 535.446 kb on - strandat 535.462 kb on + strandat 535.463 kb on - strandat 535.575 kb on + strandat 535.575 kb on + strandat 535.583 kb on + strandat 535.583 kb on + strandat 535.597 kb on + strandat 535.597 kb on + strandat 535.597 kb on + strandat 535.597 kb on + strandat 535.597 kb on + strandat 535.597 kb on + strandat 535.598 kb on - strandat 535.598 kb on - strandat 535.598 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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532,756 - -0.6
532,804 - -1.0
532,804 - +1.0
532,872 + GFF483 0.22 +0.1
532,872 + GFF483 0.22 -0.4
532,873 - GFF483 0.22 -1.1
532,873 - GFF483 0.22 -0.9
532,873 - GFF483 0.22 +1.0
532,873 - GFF483 0.22 -0.2
532,873 - GFF483 0.22 +0.3
532,873 - GFF483 0.22 +0.7
532,876 + GFF483 0.23 +0.6
532,876 + GFF483 0.23 +0.4
532,876 + GFF483 0.23 -0.6
533,076 + GFF483 0.60 +0.1
533,076 + GFF483 0.60 -0.8
533,076 + GFF483 0.60 -1.0
533,077 - GFF483 0.60 -1.5
533,077 - GFF483 0.60 -0.2
533,250 + -1.1
533,406 + -1.3
533,406 + -0.0
533,407 - +0.2
533,407 - -0.3
533,407 - -0.1
533,407 - -0.2
533,407 - +0.6
533,472 + GFF484 0.36 -0.1
533,472 + GFF484 0.36 -0.1
533,472 + GFF484 0.36 +0.2
533,472 + GFF484 0.36 -0.1
533,472 + GFF484 0.36 -1.6
533,473 - GFF484 0.36 -0.5
533,473 - GFF484 0.36 +0.4
533,496 + GFF484 0.46 -0.6
533,497 - GFF484 0.46 +0.4
533,497 - GFF484 0.46 +0.3
533,650 + +1.5
533,650 + +0.6
533,650 + +0.5
533,650 + -1.0
533,650 + -0.3
533,651 - -1.3
533,651 - +1.8
533,651 - -0.8
533,654 + +0.5
533,654 + +0.1
533,654 + -1.0
533,654 + +0.1
533,654 + -0.4
533,654 + +0.3
533,655 - -0.4
533,655 - +0.1
533,655 - -0.3
533,655 - -0.4
533,655 - -0.4
533,655 - -0.6
533,655 - -0.4
534,114 + GFF485 0.34 -2.3
534,115 - GFF485 0.35 -1.4
534,115 - GFF485 0.35 -0.2
534,234 + GFF485 0.46 -0.8
534,235 - GFF485 0.46 -1.8
534,235 - GFF485 0.46 -2.0
534,567 + GFF485 0.76 -1.2
534,842 + -1.6
534,842 + -1.2
534,842 + -0.5
534,843 - -0.7
534,843 - -1.4
534,843 - +1.0
535,256 + GFF486 0.86 -0.5
535,367 - -2.4
535,367 - -2.4
535,367 - -0.2
535,444 - -2.6
535,444 - -0.9
535,444 - -3.2
535,446 - -1.0
535,462 + -1.0
535,463 - +0.2
535,575 + +0.3
535,575 + +0.4
535,583 + +0.9
535,583 + -1.0
535,597 + +0.0
535,597 + -0.2
535,597 + +0.4
535,597 + +0.7
535,597 + -0.1
535,597 + +0.4
535,598 - +1.1
535,598 - +0.7
535,598 - +0.5

Or see this region's nucleotide sequence