Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF480 and GFF481 are separated by 377 nucleotides GFF481 and GFF482 are separated by 57 nucleotides
GFF480 - Proline/betaine transporter, at 529,504 to 530,802
GFF480
GFF481 - putative acyl-CoA thioester hydrolase, at 531,180 to 531,584
GFF481
GFF482 - Putative glucose-6-phosphate 1-epimerase, at 531,642 to 532,541
GFF482
Position (kb) 531
532 Strain fitness (log2 ratio) -2
-1
0
1
2 at 530.232 kb on + strand, within GFF480 at 530.232 kb on + strand, within GFF480 at 530.234 kb on + strand, within GFF480 at 530.234 kb on + strand, within GFF480 at 530.234 kb on + strand, within GFF480 at 530.235 kb on - strand, within GFF480 at 530.235 kb on - strand, within GFF480 at 530.336 kb on - strand, within GFF480 at 530.447 kb on + strand, within GFF480 at 530.577 kb on - strand, within GFF480 at 530.691 kb on - strand at 530.691 kb on - strand at 530.735 kb on + strand at 530.735 kb on + strand at 530.735 kb on + strand at 530.735 kb on + strand at 530.736 kb on - strand at 530.818 kb on + strand at 530.818 kb on + strand at 530.818 kb on + strand at 530.818 kb on + strand at 530.818 kb on + strand at 530.818 kb on + strand at 530.818 kb on + strand at 530.819 kb on - strand at 530.819 kb on - strand at 530.819 kb on - strand at 530.820 kb on + strand at 530.821 kb on - strand at 530.877 kb on - strand at 530.900 kb on + strand at 530.900 kb on + strand at 530.900 kb on + strand at 530.900 kb on + strand at 530.900 kb on + strand at 530.900 kb on + strand at 530.901 kb on - strand at 530.901 kb on - strand at 530.911 kb on - strand at 530.911 kb on - strand at 530.953 kb on + strand at 530.965 kb on + strand at 530.965 kb on + strand at 530.965 kb on + strand at 530.966 kb on - strand at 531.065 kb on - strand at 531.133 kb on - strand at 531.184 kb on + strand at 531.184 kb on + strand at 531.185 kb on - strand at 531.418 kb on - strand, within GFF481 at 531.418 kb on - strand, within GFF481 at 531.418 kb on - strand, within GFF481 at 531.420 kb on - strand, within GFF481 at 531.420 kb on - strand, within GFF481 at 531.582 kb on + strand at 531.610 kb on - strand at 531.754 kb on - strand, within GFF482 at 531.897 kb on + strand, within GFF482 at 531.897 kb on + strand, within GFF482 at 531.898 kb on - strand, within GFF482 at 531.898 kb on - strand, within GFF482 at 531.898 kb on - strand, within GFF482 at 531.898 kb on - strand, within GFF482 at 531.898 kb on - strand, within GFF482 at 531.898 kb on - strand, within GFF482 at 531.898 kb on - strand, within GFF482 at 532.008 kb on + strand, within GFF482 at 532.087 kb on - strand, within GFF482 at 532.087 kb on - strand, within GFF482 at 532.103 kb on + strand, within GFF482 at 532.149 kb on + strand, within GFF482 at 532.150 kb on - strand, within GFF482 at 532.150 kb on - strand, within GFF482 at 532.150 kb on - strand, within GFF482 at 532.150 kb on - strand, within GFF482 at 532.172 kb on + strand, within GFF482 at 532.172 kb on + strand, within GFF482 at 532.172 kb on + strand, within GFF482 at 532.173 kb on - strand, within GFF482 at 532.173 kb on - strand, within GFF482 at 532.173 kb on - strand, within GFF482 at 532.173 kb on - strand, within GFF482 at 532.173 kb on - strand, within GFF482 at 532.173 kb on - strand, within GFF482 at 532.206 kb on + strand, within GFF482 at 532.206 kb on + strand, within GFF482 at 532.206 kb on + strand, within GFF482 at 532.206 kb on + strand, within GFF482 at 532.207 kb on - strand, within GFF482 at 532.285 kb on - strand, within GFF482 at 532.285 kb on - strand, within GFF482 at 532.505 kb on + strand at 532.506 kb on - strand at 532.506 kb on - strand at 532.539 kb on + strand at 532.539 kb on + strand at 532.540 kb on - strand at 532.546 kb on + strand at 532.546 kb on + strand at 532.546 kb on + strand at 532.546 kb on + strand at 532.547 kb on - strand at 532.547 kb on - strand at 532.547 kb on - strand at 532.554 kb on + strand at 532.554 kb on + strand at 532.554 kb on + strand at 532.554 kb on + strand at 532.555 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 530,232 + GFF480 0.56 -0.8 530,232 + GFF480 0.56 -0.2 530,234 + GFF480 0.56 -0.1 530,234 + GFF480 0.56 -0.4 530,234 + GFF480 0.56 -0.5 530,235 - GFF480 0.56 -0.2 530,235 - GFF480 0.56 -0.8 530,336 - GFF480 0.64 -0.6 530,447 + GFF480 0.73 +0.1 530,577 - GFF480 0.83 +0.4 530,691 - -0.2 530,691 - -0.7 530,735 + +0.2 530,735 + -0.1 530,735 + -0.1 530,735 + -2.1 530,736 - +0.0 530,818 + -0.3 530,818 + +0.2 530,818 + -0.2 530,818 + -0.1 530,818 + -0.3 530,818 + -0.7 530,818 + +0.3 530,819 - +0.9 530,819 - -0.3 530,819 - -0.6 530,820 + -0.9 530,821 - +0.6 530,877 - -0.3 530,900 + -0.2 530,900 + +0.9 530,900 + +0.5 530,900 + -0.9 530,900 + -1.3 530,900 + -0.9 530,901 - +0.4 530,901 - -0.7 530,911 - -0.2 530,911 - -0.4 530,953 + -0.7 530,965 + +0.6 530,965 + -0.2 530,965 + +0.3 530,966 - +0.4 531,065 - +1.1 531,133 - -0.4 531,184 + +0.4 531,184 + +1.8 531,185 - -1.4 531,418 - GFF481 0.59 -1.8 531,418 - GFF481 0.59 -0.3 531,418 - GFF481 0.59 -0.8 531,420 - GFF481 0.59 -0.6 531,420 - GFF481 0.59 +0.5 531,582 + -0.8 531,610 - -0.0 531,754 - GFF482 0.12 -0.1 531,897 + GFF482 0.28 -0.2 531,897 + GFF482 0.28 -0.8 531,898 - GFF482 0.28 -0.7 531,898 - GFF482 0.28 -1.4 531,898 - GFF482 0.28 +0.8 531,898 - GFF482 0.28 -0.9 531,898 - GFF482 0.28 -1.2 531,898 - GFF482 0.28 -1.4 531,898 - GFF482 0.28 -0.6 532,008 + GFF482 0.41 -0.8 532,087 - GFF482 0.49 -0.8 532,087 - GFF482 0.49 -0.5 532,103 + GFF482 0.51 -0.6 532,149 + GFF482 0.56 +1.4 532,150 - GFF482 0.56 -0.2 532,150 - GFF482 0.56 +0.5 532,150 - GFF482 0.56 +0.1 532,150 - GFF482 0.56 +0.4 532,172 + GFF482 0.59 -0.4 532,172 + GFF482 0.59 -0.2 532,172 + GFF482 0.59 -1.4 532,173 - GFF482 0.59 -0.8 532,173 - GFF482 0.59 -0.2 532,173 - GFF482 0.59 -0.4 532,173 - GFF482 0.59 +0.6 532,173 - GFF482 0.59 +0.1 532,173 - GFF482 0.59 +0.4 532,206 + GFF482 0.63 +0.2 532,206 + GFF482 0.63 +0.3 532,206 + GFF482 0.63 +1.3 532,206 + GFF482 0.63 -0.1 532,207 - GFF482 0.63 -0.1 532,285 - GFF482 0.71 +0.8 532,285 - GFF482 0.71 +0.2 532,505 + -1.2 532,506 - +0.8 532,506 - -0.2 532,539 + -0.5 532,539 + +0.1 532,540 - +0.3 532,546 + -0.4 532,546 + +1.1 532,546 + +0.3 532,546 + +0.2 532,547 - +0.3 532,547 - +0.2 532,547 - -0.4 532,554 + -0.6 532,554 + -0.2 532,554 + -0.8 532,554 + -0.3 532,555 - -0.1
Or see this region's nucleotide sequence