Strain Fitness in Pseudomonas sp. DMC3 around GFF479

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF478 and GFF479 are separated by 220 nucleotidesGFF479 and GFF480 are separated by 251 nucleotides GFF478 - hypothetical protein, at 525,748 to 528,033 GFF478 GFF479 - Phosphate-binding protein PstS, at 528,254 to 529,252 GFF479 GFF480 - Proline/betaine transporter, at 529,504 to 530,802 GFF480 Position (kb) 528 529 530Strain fitness (log2 ratio) -2 -1 0 1at 527.489 kb on + strand, within GFF478at 527.529 kb on - strand, within GFF478at 527.538 kb on + strand, within GFF478at 527.538 kb on + strand, within GFF478at 527.538 kb on + strand, within GFF478at 527.539 kb on - strand, within GFF478at 527.540 kb on + strand, within GFF478at 527.540 kb on + strand, within GFF478at 527.541 kb on - strand, within GFF478at 527.541 kb on - strand, within GFF478at 527.541 kb on - strand, within GFF478at 527.541 kb on - strand, within GFF478at 527.541 kb on - strand, within GFF478at 527.541 kb on - strand, within GFF478at 527.541 kb on - strand, within GFF478at 527.541 kb on - strand, within GFF478at 527.541 kb on - strand, within GFF478at 527.544 kb on + strand, within GFF478at 527.544 kb on + strand, within GFF478at 527.544 kb on + strand, within GFF478at 527.545 kb on - strand, within GFF478at 527.545 kb on - strand, within GFF478at 527.545 kb on - strand, within GFF478at 527.545 kb on - strand, within GFF478at 527.619 kb on + strand, within GFF478at 527.620 kb on - strand, within GFF478at 527.620 kb on - strand, within GFF478at 527.620 kb on - strand, within GFF478at 527.620 kb on - strand, within GFF478at 527.620 kb on - strand, within GFF478at 527.729 kb on - strand, within GFF478at 527.846 kb on + strandat 527.846 kb on + strandat 527.847 kb on - strandat 527.909 kb on + strandat 527.909 kb on + strandat 527.910 kb on - strandat 527.910 kb on - strandat 527.910 kb on - strandat 527.970 kb on + strandat 527.971 kb on - strandat 528.003 kb on + strandat 528.003 kb on + strandat 528.004 kb on - strandat 528.004 kb on - strandat 528.045 kb on - strandat 528.055 kb on + strandat 528.255 kb on + strandat 528.255 kb on + strandat 528.255 kb on + strandat 528.256 kb on - strandat 528.256 kb on - strandat 528.256 kb on - strandat 528.336 kb on + strandat 528.350 kb on + strandat 528.351 kb on - strandat 528.439 kb on - strand, within GFF479at 528.439 kb on - strand, within GFF479at 528.439 kb on - strand, within GFF479at 528.439 kb on - strand, within GFF479at 528.439 kb on - strand, within GFF479at 528.444 kb on + strand, within GFF479at 528.445 kb on - strand, within GFF479at 528.445 kb on - strand, within GFF479at 528.465 kb on + strand, within GFF479at 528.465 kb on + strand, within GFF479at 528.465 kb on + strand, within GFF479at 528.466 kb on - strand, within GFF479at 528.558 kb on + strand, within GFF479at 528.558 kb on + strand, within GFF479at 528.558 kb on + strand, within GFF479at 528.643 kb on + strand, within GFF479at 528.643 kb on + strand, within GFF479at 528.651 kb on + strand, within GFF479at 528.652 kb on - strand, within GFF479at 528.652 kb on - strand, within GFF479at 528.690 kb on + strand, within GFF479at 528.690 kb on + strand, within GFF479at 528.916 kb on - strand, within GFF479at 528.921 kb on + strand, within GFF479at 528.921 kb on + strand, within GFF479at 528.921 kb on + strand, within GFF479at 529.068 kb on + strand, within GFF479at 529.069 kb on - strand, within GFF479at 529.069 kb on - strand, within GFF479at 529.155 kb on + strandat 529.155 kb on + strandat 529.155 kb on + strandat 529.257 kb on + strandat 529.258 kb on - strandat 529.258 kb on - strandat 529.258 kb on - strandat 529.258 kb on - strandat 529.264 kb on - strandat 529.270 kb on + strandat 529.270 kb on + strandat 529.271 kb on - strandat 529.271 kb on - strandat 529.271 kb on - strandat 529.271 kb on - strandat 529.281 kb on - strandat 529.281 kb on - strandat 529.281 kb on - strandat 529.295 kb on + strandat 529.295 kb on + strandat 529.296 kb on - strandat 529.296 kb on - strandat 529.296 kb on - strandat 529.296 kb on - strandat 529.296 kb on - strandat 529.319 kb on + strandat 529.319 kb on + strandat 529.319 kb on + strandat 529.319 kb on + strandat 529.320 kb on - strandat 529.330 kb on + strandat 529.535 kb on - strandat 529.535 kb on - strandat 529.568 kb on + strandat 529.568 kb on + strandat 529.568 kb on + strandat 529.568 kb on + strandat 529.568 kb on + strandat 529.568 kb on + strandat 529.568 kb on + strandat 529.568 kb on + strandat 529.568 kb on + strandat 529.568 kb on + strandat 529.568 kb on + strandat 529.569 kb on - strandat 529.569 kb on - strandat 529.571 kb on + strandat 529.571 kb on + strandat 529.571 kb on + strandat 529.571 kb on + strandat 529.571 kb on + strandat 529.571 kb on + strandat 529.571 kb on + strandat 529.571 kb on + strandat 529.571 kb on + strandat 529.571 kb on + strandat 529.571 kb on + strandat 529.572 kb on - strandat 529.572 kb on - strandat 529.572 kb on - strandat 529.572 kb on - strandat 529.572 kb on - strandat 529.656 kb on - strand, within GFF480at 529.712 kb on + strand, within GFF480at 529.713 kb on - strand, within GFF480at 529.713 kb on - strand, within GFF480at 529.757 kb on + strand, within GFF480at 529.757 kb on + strand, within GFF480at 529.757 kb on + strand, within GFF480at 529.757 kb on + strand, within GFF480at 529.758 kb on - strand, within GFF480at 529.758 kb on - strand, within GFF480at 529.758 kb on - strand, within GFF480at 529.758 kb on - strand, within GFF480at 529.799 kb on + strand, within GFF480at 529.800 kb on - strand, within GFF480at 529.800 kb on - strand, within GFF480at 529.800 kb on - strand, within GFF480at 529.958 kb on + strand, within GFF480at 529.997 kb on - strand, within GFF480at 530.103 kb on + strand, within GFF480at 530.104 kb on - strand, within GFF480at 530.157 kb on - strand, within GFF480at 530.232 kb on + strand, within GFF480at 530.232 kb on + strand, within GFF480at 530.234 kb on + strand, within GFF480at 530.234 kb on + strand, within GFF480at 530.234 kb on + strand, within GFF480at 530.235 kb on - strand, within GFF480at 530.235 kb on - strand, within GFF480

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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527,489 + GFF478 0.76 -0.2
527,529 - GFF478 0.78 -0.4
527,538 + GFF478 0.78 -0.8
527,538 + GFF478 0.78 -1.9
527,538 + GFF478 0.78 -1.5
527,539 - GFF478 0.78 -2.4
527,540 + GFF478 0.78 -0.8
527,540 + GFF478 0.78 -1.4
527,541 - GFF478 0.78 -1.0
527,541 - GFF478 0.78 +0.6
527,541 - GFF478 0.78 -2.7
527,541 - GFF478 0.78 -1.6
527,541 - GFF478 0.78 -1.4
527,541 - GFF478 0.78 -1.4
527,541 - GFF478 0.78 -1.2
527,541 - GFF478 0.78 +0.2
527,541 - GFF478 0.78 -1.6
527,544 + GFF478 0.79 -1.8
527,544 + GFF478 0.79 -1.5
527,544 + GFF478 0.79 -1.5
527,545 - GFF478 0.79 -0.8
527,545 - GFF478 0.79 +0.6
527,545 - GFF478 0.79 -1.1
527,545 - GFF478 0.79 +1.1
527,619 + GFF478 0.82 +0.5
527,620 - GFF478 0.82 -1.2
527,620 - GFF478 0.82 -1.2
527,620 - GFF478 0.82 -0.2
527,620 - GFF478 0.82 -1.0
527,620 - GFF478 0.82 +0.1
527,729 - GFF478 0.87 +0.0
527,846 + -2.0
527,846 + -1.0
527,847 - -0.5
527,909 + -0.4
527,909 + +0.9
527,910 - -1.8
527,910 - -0.3
527,910 - -1.2
527,970 + +1.1
527,971 - -1.0
528,003 + +0.8
528,003 + -0.2
528,004 - -0.6
528,004 - -2.3
528,045 - +0.1
528,055 + -0.0
528,255 + -0.9
528,255 + -2.4
528,255 + +0.7
528,256 - -0.7
528,256 - +0.2
528,256 - -0.7
528,336 + +0.4
528,350 + +0.2
528,351 - +0.6
528,439 - GFF479 0.19 -0.2
528,439 - GFF479 0.19 -2.3
528,439 - GFF479 0.19 -1.2
528,439 - GFF479 0.19 -0.5
528,439 - GFF479 0.19 -1.9
528,444 + GFF479 0.19 -1.9
528,445 - GFF479 0.19 -1.2
528,445 - GFF479 0.19 +1.1
528,465 + GFF479 0.21 +0.0
528,465 + GFF479 0.21 +0.1
528,465 + GFF479 0.21 -2.3
528,466 - GFF479 0.21 -0.9
528,558 + GFF479 0.30 -0.5
528,558 + GFF479 0.30 +0.1
528,558 + GFF479 0.30 -2.1
528,643 + GFF479 0.39 -1.2
528,643 + GFF479 0.39 -1.1
528,651 + GFF479 0.40 -0.8
528,652 - GFF479 0.40 -0.3
528,652 - GFF479 0.40 -0.4
528,690 + GFF479 0.44 -0.5
528,690 + GFF479 0.44 -0.6
528,916 - GFF479 0.66 -0.2
528,921 + GFF479 0.67 -1.1
528,921 + GFF479 0.67 -0.5
528,921 + GFF479 0.67 -0.6
529,068 + GFF479 0.81 -0.2
529,069 - GFF479 0.82 +0.3
529,069 - GFF479 0.82 +0.3
529,155 + -2.2
529,155 + -0.9
529,155 + -0.5
529,257 + -0.5
529,258 - -0.1
529,258 - -0.4
529,258 - -1.1
529,258 - +0.7
529,264 - -0.3
529,270 + -0.8
529,270 + +0.1
529,271 - +0.0
529,271 - +0.3
529,271 - +0.0
529,271 - -1.4
529,281 - +1.1
529,281 - -1.3
529,281 - -0.1
529,295 + +0.3
529,295 + +1.0
529,296 - -0.4
529,296 - +0.8
529,296 - +0.3
529,296 - +1.1
529,296 - -0.2
529,319 + +0.7
529,319 + +0.3
529,319 + +0.2
529,319 + +0.3
529,320 - +0.5
529,330 + -0.5
529,535 - -0.2
529,535 - -1.0
529,568 + -0.2
529,568 + -0.0
529,568 + -0.9
529,568 + +0.3
529,568 + +0.3
529,568 + +0.8
529,568 + -0.5
529,568 + +0.4
529,568 + -0.0
529,568 + +0.3
529,568 + -1.2
529,569 - +0.1
529,569 - +0.3
529,571 + -0.4
529,571 + -0.2
529,571 + -0.3
529,571 + +0.0
529,571 + -0.2
529,571 + +0.4
529,571 + +0.3
529,571 + +0.5
529,571 + -0.5
529,571 + +0.3
529,571 + -1.1
529,572 - -1.2
529,572 - +1.1
529,572 - -0.6
529,572 - +0.8
529,572 - -0.6
529,656 - GFF480 0.12 -2.5
529,712 + GFF480 0.16 +0.7
529,713 - GFF480 0.16 +0.1
529,713 - GFF480 0.16 -0.5
529,757 + GFF480 0.19 +0.2
529,757 + GFF480 0.19 -0.7
529,757 + GFF480 0.19 -0.3
529,757 + GFF480 0.19 -0.3
529,758 - GFF480 0.20 +0.3
529,758 - GFF480 0.20 -0.7
529,758 - GFF480 0.20 -2.2
529,758 - GFF480 0.20 +0.3
529,799 + GFF480 0.23 -0.3
529,800 - GFF480 0.23 -0.1
529,800 - GFF480 0.23 +0.2
529,800 - GFF480 0.23 +0.7
529,958 + GFF480 0.35 -0.5
529,997 - GFF480 0.38 -0.4
530,103 + GFF480 0.46 -0.3
530,104 - GFF480 0.46 +0.1
530,157 - GFF480 0.50 -1.2
530,232 + GFF480 0.56 -0.8
530,232 + GFF480 0.56 -0.2
530,234 + GFF480 0.56 -0.1
530,234 + GFF480 0.56 -0.4
530,234 + GFF480 0.56 -0.5
530,235 - GFF480 0.56 -0.2
530,235 - GFF480 0.56 -0.8

Or see this region's nucleotide sequence