Strain Fitness in Pseudomonas sp. DMC3 around GFF478

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF477 and GFF478 are separated by 16 nucleotidesGFF478 and GFF479 are separated by 220 nucleotides GFF477 - hypothetical protein, at 524,061 to 525,731 GFF477 GFF478 - hypothetical protein, at 525,748 to 528,033 GFF478 GFF479 - Phosphate-binding protein PstS, at 528,254 to 529,252 GFF479 Position (kb) 525 526 527 528 529Strain fitness (log2 ratio) -2 -1 0 1 2at 524.765 kb on + strand, within GFF477at 524.884 kb on + strand, within GFF477at 524.885 kb on - strand, within GFF477at 525.302 kb on - strand, within GFF477at 525.307 kb on + strand, within GFF477at 525.307 kb on + strand, within GFF477at 525.308 kb on - strand, within GFF477at 525.308 kb on - strand, within GFF477at 525.308 kb on - strand, within GFF477at 525.739 kb on + strandat 525.740 kb on - strandat 525.740 kb on - strandat 525.749 kb on + strandat 525.761 kb on + strandat 525.858 kb on - strandat 526.151 kb on + strand, within GFF478at 526.151 kb on + strand, within GFF478at 526.152 kb on - strand, within GFF478at 526.214 kb on + strand, within GFF478at 526.214 kb on + strand, within GFF478at 526.215 kb on - strand, within GFF478at 526.215 kb on - strand, within GFF478at 526.215 kb on - strand, within GFF478at 526.292 kb on + strand, within GFF478at 526.293 kb on - strand, within GFF478at 526.293 kb on - strand, within GFF478at 526.293 kb on - strand, within GFF478at 526.465 kb on + strand, within GFF478at 526.465 kb on + strand, within GFF478at 526.466 kb on - strand, within GFF478at 526.466 kb on - strand, within GFF478at 526.466 kb on - strand, within GFF478at 526.466 kb on - strand, within GFF478at 526.466 kb on - strand, within GFF478at 526.466 kb on - strand, within GFF478at 526.466 kb on - strand, within GFF478at 526.470 kb on - strand, within GFF478at 526.577 kb on + strand, within GFF478at 526.577 kb on + strand, within GFF478at 526.578 kb on - strand, within GFF478at 526.721 kb on + strand, within GFF478at 526.721 kb on + strand, within GFF478at 526.721 kb on + strand, within GFF478at 526.721 kb on + strand, within GFF478at 526.722 kb on - strand, within GFF478at 526.722 kb on - strand, within GFF478at 526.722 kb on - strand, within GFF478at 526.722 kb on - strand, within GFF478at 526.722 kb on - strand, within GFF478at 526.722 kb on - strand, within GFF478at 526.722 kb on - strand, within GFF478at 526.725 kb on + strand, within GFF478at 526.726 kb on - strand, within GFF478at 526.737 kb on - strand, within GFF478at 526.745 kb on + strand, within GFF478at 526.777 kb on + strand, within GFF478at 527.116 kb on - strand, within GFF478at 527.240 kb on + strand, within GFF478at 527.240 kb on + strand, within GFF478at 527.240 kb on + strand, within GFF478at 527.240 kb on + strand, within GFF478at 527.241 kb on - strand, within GFF478at 527.241 kb on - strand, within GFF478at 527.241 kb on - strand, within GFF478at 527.241 kb on - strand, within GFF478at 527.489 kb on + strand, within GFF478at 527.529 kb on - strand, within GFF478at 527.538 kb on + strand, within GFF478at 527.538 kb on + strand, within GFF478at 527.538 kb on + strand, within GFF478at 527.539 kb on - strand, within GFF478at 527.540 kb on + strand, within GFF478at 527.540 kb on + strand, within GFF478at 527.541 kb on - strand, within GFF478at 527.541 kb on - strand, within GFF478at 527.541 kb on - strand, within GFF478at 527.541 kb on - strand, within GFF478at 527.541 kb on - strand, within GFF478at 527.541 kb on - strand, within GFF478at 527.541 kb on - strand, within GFF478at 527.541 kb on - strand, within GFF478at 527.541 kb on - strand, within GFF478at 527.544 kb on + strand, within GFF478at 527.544 kb on + strand, within GFF478at 527.544 kb on + strand, within GFF478at 527.545 kb on - strand, within GFF478at 527.545 kb on - strand, within GFF478at 527.545 kb on - strand, within GFF478at 527.545 kb on - strand, within GFF478at 527.619 kb on + strand, within GFF478at 527.620 kb on - strand, within GFF478at 527.620 kb on - strand, within GFF478at 527.620 kb on - strand, within GFF478at 527.620 kb on - strand, within GFF478at 527.620 kb on - strand, within GFF478at 527.729 kb on - strand, within GFF478at 527.846 kb on + strandat 527.846 kb on + strandat 527.847 kb on - strandat 527.909 kb on + strandat 527.909 kb on + strandat 527.910 kb on - strandat 527.910 kb on - strandat 527.910 kb on - strandat 527.970 kb on + strandat 527.971 kb on - strandat 528.003 kb on + strandat 528.003 kb on + strandat 528.004 kb on - strandat 528.004 kb on - strandat 528.045 kb on - strandat 528.055 kb on + strandat 528.255 kb on + strandat 528.255 kb on + strandat 528.255 kb on + strandat 528.256 kb on - strandat 528.256 kb on - strandat 528.256 kb on - strandat 528.336 kb on + strandat 528.350 kb on + strandat 528.351 kb on - strandat 528.439 kb on - strand, within GFF479at 528.439 kb on - strand, within GFF479at 528.439 kb on - strand, within GFF479at 528.439 kb on - strand, within GFF479at 528.439 kb on - strand, within GFF479at 528.444 kb on + strand, within GFF479at 528.445 kb on - strand, within GFF479at 528.445 kb on - strand, within GFF479at 528.465 kb on + strand, within GFF479at 528.465 kb on + strand, within GFF479at 528.465 kb on + strand, within GFF479at 528.466 kb on - strand, within GFF479at 528.558 kb on + strand, within GFF479at 528.558 kb on + strand, within GFF479at 528.558 kb on + strand, within GFF479at 528.643 kb on + strand, within GFF479at 528.643 kb on + strand, within GFF479at 528.651 kb on + strand, within GFF479at 528.652 kb on - strand, within GFF479at 528.652 kb on - strand, within GFF479at 528.690 kb on + strand, within GFF479at 528.690 kb on + strand, within GFF479at 528.916 kb on - strand, within GFF479at 528.921 kb on + strand, within GFF479at 528.921 kb on + strand, within GFF479at 528.921 kb on + strand, within GFF479

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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524,765 + GFF477 0.42 +0.8
524,884 + GFF477 0.49 -2.0
524,885 - GFF477 0.49 -1.9
525,302 - GFF477 0.74 -0.6
525,307 + GFF477 0.75 -2.2
525,307 + GFF477 0.75 -1.0
525,308 - GFF477 0.75 +0.3
525,308 - GFF477 0.75 +0.6
525,308 - GFF477 0.75 +1.8
525,739 + -0.4
525,740 - -0.0
525,740 - +0.6
525,749 + -0.2
525,761 + -0.5
525,858 - +0.8
526,151 + GFF478 0.18 -1.5
526,151 + GFF478 0.18 +0.0
526,152 - GFF478 0.18 -0.8
526,214 + GFF478 0.20 -0.8
526,214 + GFF478 0.20 -0.2
526,215 - GFF478 0.20 +1.1
526,215 - GFF478 0.20 -0.4
526,215 - GFF478 0.20 -0.4
526,292 + GFF478 0.24 -1.0
526,293 - GFF478 0.24 -1.0
526,293 - GFF478 0.24 -0.5
526,293 - GFF478 0.24 -0.9
526,465 + GFF478 0.31 -1.2
526,465 + GFF478 0.31 -2.6
526,466 - GFF478 0.31 +0.7
526,466 - GFF478 0.31 -0.7
526,466 - GFF478 0.31 -0.8
526,466 - GFF478 0.31 -1.0
526,466 - GFF478 0.31 -0.4
526,466 - GFF478 0.31 -2.0
526,466 - GFF478 0.31 -0.8
526,470 - GFF478 0.32 -0.8
526,577 + GFF478 0.36 -2.4
526,577 + GFF478 0.36 -0.8
526,578 - GFF478 0.36 -0.3
526,721 + GFF478 0.43 -1.0
526,721 + GFF478 0.43 -0.5
526,721 + GFF478 0.43 -0.6
526,721 + GFF478 0.43 -1.9
526,722 - GFF478 0.43 +0.5
526,722 - GFF478 0.43 -0.4
526,722 - GFF478 0.43 -1.6
526,722 - GFF478 0.43 -0.5
526,722 - GFF478 0.43 -0.1
526,722 - GFF478 0.43 -1.8
526,722 - GFF478 0.43 -1.0
526,725 + GFF478 0.43 -1.2
526,726 - GFF478 0.43 +0.1
526,737 - GFF478 0.43 -0.0
526,745 + GFF478 0.44 -1.9
526,777 + GFF478 0.45 -1.1
527,116 - GFF478 0.60 -0.8
527,240 + GFF478 0.65 -0.5
527,240 + GFF478 0.65 -0.5
527,240 + GFF478 0.65 -0.5
527,240 + GFF478 0.65 -0.5
527,241 - GFF478 0.65 -0.5
527,241 - GFF478 0.65 -0.4
527,241 - GFF478 0.65 -1.4
527,241 - GFF478 0.65 -1.8
527,489 + GFF478 0.76 -0.2
527,529 - GFF478 0.78 -0.4
527,538 + GFF478 0.78 -0.8
527,538 + GFF478 0.78 -1.9
527,538 + GFF478 0.78 -1.5
527,539 - GFF478 0.78 -2.4
527,540 + GFF478 0.78 -0.8
527,540 + GFF478 0.78 -1.4
527,541 - GFF478 0.78 -1.0
527,541 - GFF478 0.78 +0.6
527,541 - GFF478 0.78 -2.7
527,541 - GFF478 0.78 -1.6
527,541 - GFF478 0.78 -1.4
527,541 - GFF478 0.78 -1.4
527,541 - GFF478 0.78 -1.2
527,541 - GFF478 0.78 +0.2
527,541 - GFF478 0.78 -1.6
527,544 + GFF478 0.79 -1.8
527,544 + GFF478 0.79 -1.5
527,544 + GFF478 0.79 -1.5
527,545 - GFF478 0.79 -0.8
527,545 - GFF478 0.79 +0.6
527,545 - GFF478 0.79 -1.1
527,545 - GFF478 0.79 +1.1
527,619 + GFF478 0.82 +0.5
527,620 - GFF478 0.82 -1.2
527,620 - GFF478 0.82 -1.2
527,620 - GFF478 0.82 -0.2
527,620 - GFF478 0.82 -1.0
527,620 - GFF478 0.82 +0.1
527,729 - GFF478 0.87 +0.0
527,846 + -2.0
527,846 + -1.0
527,847 - -0.5
527,909 + -0.4
527,909 + +0.9
527,910 - -1.8
527,910 - -0.3
527,910 - -1.2
527,970 + +1.1
527,971 - -1.0
528,003 + +0.8
528,003 + -0.2
528,004 - -0.6
528,004 - -2.3
528,045 - +0.1
528,055 + -0.0
528,255 + -0.9
528,255 + -2.4
528,255 + +0.7
528,256 - -0.7
528,256 - +0.2
528,256 - -0.7
528,336 + +0.4
528,350 + +0.2
528,351 - +0.6
528,439 - GFF479 0.19 -0.2
528,439 - GFF479 0.19 -2.3
528,439 - GFF479 0.19 -1.2
528,439 - GFF479 0.19 -0.5
528,439 - GFF479 0.19 -1.9
528,444 + GFF479 0.19 -1.9
528,445 - GFF479 0.19 -1.2
528,445 - GFF479 0.19 +1.1
528,465 + GFF479 0.21 +0.0
528,465 + GFF479 0.21 +0.1
528,465 + GFF479 0.21 -2.3
528,466 - GFF479 0.21 -0.9
528,558 + GFF479 0.30 -0.5
528,558 + GFF479 0.30 +0.1
528,558 + GFF479 0.30 -2.1
528,643 + GFF479 0.39 -1.2
528,643 + GFF479 0.39 -1.1
528,651 + GFF479 0.40 -0.8
528,652 - GFF479 0.40 -0.3
528,652 - GFF479 0.40 -0.4
528,690 + GFF479 0.44 -0.5
528,690 + GFF479 0.44 -0.6
528,916 - GFF479 0.66 -0.2
528,921 + GFF479 0.67 -1.1
528,921 + GFF479 0.67 -0.5
528,921 + GFF479 0.67 -0.6

Or see this region's nucleotide sequence