Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4707 and GFF4708 are separated by 329 nucleotides GFF4708 and GFF4709 are separated by 72 nucleotides
GFF4707 - 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase, at 208,171 to 208,986
GFF4707
GFF4708 - hypothetical protein, at 209,316 to 209,468
GFF4708
GFF4709 - Phosphoglycerol transferase I, at 209,541 to 211,634
GFF4709
Position (kb) 209
210 Strain fitness (log2 ratio) -1
0
1 at 208.325 kb on + strand, within GFF4707 at 208.325 kb on + strand, within GFF4707 at 208.325 kb on + strand, within GFF4707 at 208.325 kb on + strand, within GFF4707 at 208.326 kb on - strand, within GFF4707 at 208.326 kb on - strand, within GFF4707 at 208.326 kb on - strand, within GFF4707 at 208.326 kb on - strand, within GFF4707 at 208.326 kb on - strand, within GFF4707 at 208.331 kb on + strand, within GFF4707 at 208.331 kb on + strand, within GFF4707 at 208.331 kb on + strand, within GFF4707 at 208.331 kb on + strand, within GFF4707 at 208.331 kb on + strand, within GFF4707 at 208.331 kb on + strand, within GFF4707 at 208.332 kb on - strand, within GFF4707 at 208.332 kb on - strand, within GFF4707 at 208.332 kb on - strand, within GFF4707 at 208.332 kb on - strand, within GFF4707 at 208.538 kb on + strand, within GFF4707 at 208.538 kb on + strand, within GFF4707 at 208.538 kb on + strand, within GFF4707 at 208.538 kb on + strand, within GFF4707 at 208.538 kb on + strand, within GFF4707 at 208.538 kb on + strand, within GFF4707 at 208.538 kb on + strand, within GFF4707 at 208.539 kb on - strand, within GFF4707 at 208.539 kb on - strand, within GFF4707 at 208.539 kb on - strand, within GFF4707 at 208.539 kb on - strand, within GFF4707 at 208.539 kb on - strand, within GFF4707 at 208.539 kb on - strand, within GFF4707 at 208.539 kb on - strand, within GFF4707 at 208.756 kb on + strand, within GFF4707 at 208.757 kb on - strand, within GFF4707 at 209.028 kb on - strand at 209.168 kb on + strand at 209.169 kb on - strand at 209.186 kb on - strand at 209.186 kb on - strand at 209.186 kb on - strand at 209.235 kb on + strand at 209.236 kb on - strand at 209.329 kb on + strand at 209.398 kb on - strand, within GFF4708 at 209.414 kb on + strand, within GFF4708 at 209.415 kb on - strand, within GFF4708 at 209.464 kb on + strand at 209.464 kb on + strand at 209.465 kb on - strand at 209.465 kb on - strand at 209.483 kb on - strand at 209.531 kb on + strand at 209.532 kb on - strand at 209.689 kb on + strand at 209.689 kb on + strand at 209.689 kb on + strand at 209.690 kb on - strand at 210.058 kb on + strand, within GFF4709 at 210.058 kb on + strand, within GFF4709 at 210.058 kb on + strand, within GFF4709 at 210.058 kb on + strand, within GFF4709 at 210.059 kb on - strand, within GFF4709 at 210.059 kb on - strand, within GFF4709 at 210.188 kb on - strand, within GFF4709 at 210.223 kb on + strand, within GFF4709 at 210.223 kb on + strand, within GFF4709 at 210.223 kb on + strand, within GFF4709 at 210.224 kb on - strand, within GFF4709 at 210.224 kb on - strand, within GFF4709 at 210.224 kb on - strand, within GFF4709 at 210.409 kb on + strand, within GFF4709 at 210.410 kb on - strand, within GFF4709 at 210.415 kb on + strand, within GFF4709 at 210.416 kb on - strand, within GFF4709 at 210.416 kb on - strand, within GFF4709 at 210.416 kb on - strand, within GFF4709 at 210.427 kb on + strand, within GFF4709
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 208,325 + GFF4707 0.19 -0.9 208,325 + GFF4707 0.19 -0.4 208,325 + GFF4707 0.19 -0.8 208,325 + GFF4707 0.19 +0.5 208,326 - GFF4707 0.19 +0.8 208,326 - GFF4707 0.19 -0.4 208,326 - GFF4707 0.19 +0.6 208,326 - GFF4707 0.19 -0.1 208,326 - GFF4707 0.19 -0.2 208,331 + GFF4707 0.20 -0.9 208,331 + GFF4707 0.20 +0.1 208,331 + GFF4707 0.20 -0.6 208,331 + GFF4707 0.20 +0.4 208,331 + GFF4707 0.20 +0.0 208,331 + GFF4707 0.20 -0.0 208,332 - GFF4707 0.20 +0.5 208,332 - GFF4707 0.20 -1.2 208,332 - GFF4707 0.20 +0.4 208,332 - GFF4707 0.20 +0.2 208,538 + GFF4707 0.45 +0.0 208,538 + GFF4707 0.45 +0.3 208,538 + GFF4707 0.45 +0.9 208,538 + GFF4707 0.45 +0.9 208,538 + GFF4707 0.45 +0.3 208,538 + GFF4707 0.45 -0.5 208,538 + GFF4707 0.45 +0.5 208,539 - GFF4707 0.45 -0.4 208,539 - GFF4707 0.45 +0.1 208,539 - GFF4707 0.45 +0.4 208,539 - GFF4707 0.45 +0.0 208,539 - GFF4707 0.45 -0.3 208,539 - GFF4707 0.45 +0.6 208,539 - GFF4707 0.45 -0.4 208,756 + GFF4707 0.72 -1.1 208,757 - GFF4707 0.72 +0.5 209,028 - +0.9 209,168 + -0.9 209,169 - +0.2 209,186 - -1.2 209,186 - -0.6 209,186 - +0.1 209,235 + -0.1 209,236 - -0.3 209,329 + -1.1 209,398 - GFF4708 0.54 -1.1 209,414 + GFF4708 0.64 +0.0 209,415 - GFF4708 0.65 -1.4 209,464 + -0.6 209,464 + +0.0 209,465 - -1.5 209,465 - +0.2 209,483 - -1.2 209,531 + +0.8 209,532 - +0.1 209,689 + +0.5 209,689 + +0.0 209,689 + +0.3 209,690 - -0.2 210,058 + GFF4709 0.25 +0.0 210,058 + GFF4709 0.25 -0.3 210,058 + GFF4709 0.25 +0.8 210,058 + GFF4709 0.25 -1.2 210,059 - GFF4709 0.25 -0.4 210,059 - GFF4709 0.25 -0.3 210,188 - GFF4709 0.31 -0.1 210,223 + GFF4709 0.33 +0.0 210,223 + GFF4709 0.33 +0.1 210,223 + GFF4709 0.33 +0.1 210,224 - GFF4709 0.33 +1.7 210,224 - GFF4709 0.33 -0.9 210,224 - GFF4709 0.33 -0.5 210,409 + GFF4709 0.41 +0.5 210,410 - GFF4709 0.41 -0.4 210,415 + GFF4709 0.42 -1.2 210,416 - GFF4709 0.42 -0.1 210,416 - GFF4709 0.42 -0.2 210,416 - GFF4709 0.42 +0.6 210,427 + GFF4709 0.42 -0.1
Or see this region's nucleotide sequence