Strain Fitness in Pseudomonas sp. DMC3 around GFF4693

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4691 and GFF4692 are separated by 12 nucleotidesGFF4692 and GFF4693 are separated by 191 nucleotidesGFF4693 and GFF4694 are separated by 108 nucleotides GFF4691 - DNA-binding transcriptional regulator BolA, at 187,785 to 188,084 GFF4691 GFF4692 - hypothetical protein, at 188,097 to 188,612 GFF4692 GFF4693 - Fumarate hydratase class II, at 188,804 to 190,198 GFF4693 GFF4694 - putative inner membrane transporter YhbE, at 190,307 to 191,266 GFF4694 Position (kb) 188 189 190 191Strain fitness (log2 ratio) -2 -1 0 1at 187.858 kb on + strand, within GFF4691at 187.859 kb on - strand, within GFF4691at 187.859 kb on - strand, within GFF4691at 187.859 kb on - strand, within GFF4691at 187.912 kb on + strand, within GFF4691at 187.979 kb on - strand, within GFF4691at 188.043 kb on + strand, within GFF4691at 188.044 kb on - strand, within GFF4691at 188.098 kb on + strandat 188.099 kb on - strandat 188.266 kb on + strand, within GFF4692at 188.266 kb on + strand, within GFF4692at 188.267 kb on - strand, within GFF4692at 188.267 kb on - strand, within GFF4692at 188.267 kb on - strand, within GFF4692at 188.314 kb on + strand, within GFF4692at 188.315 kb on - strand, within GFF4692at 188.470 kb on + strand, within GFF4692at 188.470 kb on + strand, within GFF4692at 188.470 kb on + strand, within GFF4692at 188.471 kb on - strand, within GFF4692at 188.471 kb on - strand, within GFF4692at 188.471 kb on - strand, within GFF4692at 188.471 kb on - strand, within GFF4692at 188.471 kb on - strand, within GFF4692at 188.624 kb on + strandat 188.624 kb on + strandat 188.624 kb on + strandat 188.625 kb on - strandat 188.667 kb on + strandat 188.668 kb on - strandat 188.668 kb on - strandat 188.668 kb on - strandat 188.668 kb on - strandat 188.770 kb on - strandat 188.859 kb on - strandat 190.050 kb on - strand, within GFF4693at 190.082 kb on + strandat 190.082 kb on + strandat 190.082 kb on + strandat 190.083 kb on - strandat 190.127 kb on + strandat 190.127 kb on + strandat 190.205 kb on + strandat 190.205 kb on + strandat 190.411 kb on - strand, within GFF4694at 190.411 kb on - strand, within GFF4694at 190.443 kb on + strand, within GFF4694at 190.443 kb on + strand, within GFF4694at 190.443 kb on + strand, within GFF4694at 190.443 kb on + strand, within GFF4694at 190.444 kb on - strand, within GFF4694at 190.444 kb on - strand, within GFF4694at 190.444 kb on - strand, within GFF4694at 190.661 kb on + strand, within GFF4694at 190.662 kb on - strand, within GFF4694at 190.677 kb on + strand, within GFF4694at 190.677 kb on + strand, within GFF4694at 190.677 kb on + strand, within GFF4694at 190.677 kb on + strand, within GFF4694at 190.677 kb on + strand, within GFF4694at 190.678 kb on - strand, within GFF4694at 190.678 kb on - strand, within GFF4694at 190.678 kb on - strand, within GFF4694at 190.740 kb on + strand, within GFF4694at 190.741 kb on - strand, within GFF4694at 190.741 kb on - strand, within GFF4694at 190.741 kb on - strand, within GFF4694at 190.741 kb on - strand, within GFF4694at 190.741 kb on - strand, within GFF4694at 190.791 kb on + strand, within GFF4694at 190.792 kb on - strand, within GFF4694at 190.792 kb on - strand, within GFF4694at 190.792 kb on - strand, within GFF4694at 190.995 kb on + strand, within GFF4694at 190.996 kb on - strand, within GFF4694at 190.996 kb on - strand, within GFF4694at 190.996 kb on - strand, within GFF4694at 190.996 kb on - strand, within GFF4694at 191.004 kb on + strand, within GFF4694at 191.004 kb on + strand, within GFF4694at 191.004 kb on + strand, within GFF4694at 191.005 kb on - strand, within GFF4694at 191.005 kb on - strand, within GFF4694at 191.005 kb on - strand, within GFF4694at 191.005 kb on - strand, within GFF4694at 191.005 kb on - strand, within GFF4694at 191.100 kb on + strand, within GFF4694at 191.100 kb on + strand, within GFF4694at 191.100 kb on + strand, within GFF4694at 191.100 kb on + strand, within GFF4694at 191.101 kb on - strand, within GFF4694at 191.101 kb on - strand, within GFF4694at 191.101 kb on - strand, within GFF4694at 191.101 kb on - strand, within GFF4694at 191.101 kb on - strand, within GFF4694at 191.171 kb on + strandat 191.171 kb on + strandat 191.171 kb on + strandat 191.172 kb on - strandat 191.172 kb on - strandat 191.172 kb on - strandat 191.172 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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187,858 + GFF4691 0.24 -1.1
187,859 - GFF4691 0.25 -1.3
187,859 - GFF4691 0.25 +0.4
187,859 - GFF4691 0.25 -0.1
187,912 + GFF4691 0.42 -2.4
187,979 - GFF4691 0.65 +0.1
188,043 + GFF4691 0.86 +0.1
188,044 - GFF4691 0.86 -0.7
188,098 + -0.2
188,099 - +1.2
188,266 + GFF4692 0.33 +0.0
188,266 + GFF4692 0.33 +0.3
188,267 - GFF4692 0.33 +0.0
188,267 - GFF4692 0.33 +0.0
188,267 - GFF4692 0.33 +0.8
188,314 + GFF4692 0.42 -0.2
188,315 - GFF4692 0.42 +0.2
188,470 + GFF4692 0.72 +0.6
188,470 + GFF4692 0.72 +1.1
188,470 + GFF4692 0.72 +0.6
188,471 - GFF4692 0.72 -0.1
188,471 - GFF4692 0.72 -0.2
188,471 - GFF4692 0.72 -0.7
188,471 - GFF4692 0.72 +0.3
188,471 - GFF4692 0.72 +0.0
188,624 + +0.1
188,624 + -0.4
188,624 + -1.2
188,625 - -0.4
188,667 + +0.3
188,668 - +0.9
188,668 - -0.7
188,668 - -0.7
188,668 - +0.6
188,770 - +0.2
188,859 - -0.8
190,050 - GFF4693 0.89 -0.6
190,082 + -0.4
190,082 + +0.0
190,082 + -0.2
190,083 - +0.1
190,127 + -0.2
190,127 + -1.7
190,205 + +0.7
190,205 + -0.9
190,411 - GFF4694 0.11 -0.8
190,411 - GFF4694 0.11 -1.5
190,443 + GFF4694 0.14 +0.3
190,443 + GFF4694 0.14 +0.0
190,443 + GFF4694 0.14 -0.5
190,443 + GFF4694 0.14 -1.3
190,444 - GFF4694 0.14 -0.4
190,444 - GFF4694 0.14 +0.1
190,444 - GFF4694 0.14 -0.4
190,661 + GFF4694 0.37 +0.5
190,662 - GFF4694 0.37 -0.1
190,677 + GFF4694 0.39 -0.2
190,677 + GFF4694 0.39 -1.4
190,677 + GFF4694 0.39 -0.1
190,677 + GFF4694 0.39 -0.1
190,677 + GFF4694 0.39 -1.7
190,678 - GFF4694 0.39 +0.1
190,678 - GFF4694 0.39 +0.0
190,678 - GFF4694 0.39 +0.3
190,740 + GFF4694 0.45 -2.3
190,741 - GFF4694 0.45 -0.4
190,741 - GFF4694 0.45 -1.1
190,741 - GFF4694 0.45 +0.4
190,741 - GFF4694 0.45 +0.2
190,741 - GFF4694 0.45 +0.2
190,791 + GFF4694 0.50 -0.8
190,792 - GFF4694 0.51 +0.3
190,792 - GFF4694 0.51 -0.9
190,792 - GFF4694 0.51 -0.6
190,995 + GFF4694 0.72 -0.2
190,996 - GFF4694 0.72 +0.6
190,996 - GFF4694 0.72 -0.7
190,996 - GFF4694 0.72 +0.2
190,996 - GFF4694 0.72 -0.9
191,004 + GFF4694 0.73 +0.1
191,004 + GFF4694 0.73 +0.4
191,004 + GFF4694 0.73 +0.8
191,005 - GFF4694 0.73 -0.3
191,005 - GFF4694 0.73 -0.5
191,005 - GFF4694 0.73 -0.8
191,005 - GFF4694 0.73 -0.2
191,005 - GFF4694 0.73 +0.3
191,100 + GFF4694 0.83 -1.6
191,100 + GFF4694 0.83 -0.7
191,100 + GFF4694 0.83 -0.8
191,100 + GFF4694 0.83 -0.1
191,101 - GFF4694 0.83 -0.4
191,101 - GFF4694 0.83 -0.4
191,101 - GFF4694 0.83 +0.0
191,101 - GFF4694 0.83 -2.2
191,101 - GFF4694 0.83 -0.9
191,171 + -2.0
191,171 + -1.0
191,171 + +1.3
191,172 - -0.7
191,172 - +0.8
191,172 - +0.1
191,172 - -1.0

Or see this region's nucleotide sequence