Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4682 and GFF4683 are separated by 4 nucleotides GFF4683 and GFF4684 are separated by 183 nucleotides GFF4684 and GFF4685 are separated by 362 nucleotides
GFF4682 - Ubiquinone biosynthesis O-methyltransferase, at 176,934 to 177,632
GFF4682
GFF4683 - N-acetylmuramic acid 6-phosphate phosphatase, at 177,637 to 178,308
GFF4683
GFF4684 - putative oxidoreductase YciK, at 178,492 to 179,232
GFF4684
GFF4685 - hypothetical protein, at 179,595 to 180,521
GFF4685
Position (kb) 178
179
180 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 177.630 kb on + strand at 177.631 kb on - strand at 177.631 kb on - strand at 177.631 kb on - strand at 177.894 kb on + strand, within GFF4683 at 177.895 kb on - strand, within GFF4683 at 178.131 kb on + strand, within GFF4683 at 178.131 kb on + strand, within GFF4683 at 178.198 kb on + strand, within GFF4683 at 178.198 kb on + strand, within GFF4683 at 178.198 kb on + strand, within GFF4683 at 178.198 kb on + strand, within GFF4683 at 178.198 kb on + strand, within GFF4683 at 178.199 kb on - strand, within GFF4683 at 178.199 kb on - strand, within GFF4683 at 178.199 kb on - strand, within GFF4683 at 178.201 kb on - strand, within GFF4683 at 178.205 kb on - strand, within GFF4683 at 178.205 kb on - strand, within GFF4683 at 178.250 kb on + strand at 178.346 kb on + strand at 178.380 kb on + strand at 178.381 kb on - strand at 178.434 kb on + strand at 178.434 kb on + strand at 178.491 kb on + strand at 178.492 kb on - strand at 178.501 kb on + strand at 178.502 kb on - strand at 178.502 kb on - strand at 178.588 kb on + strand, within GFF4684 at 178.651 kb on + strand, within GFF4684 at 178.651 kb on + strand, within GFF4684 at 178.652 kb on - strand, within GFF4684 at 178.729 kb on + strand, within GFF4684 at 178.729 kb on + strand, within GFF4684 at 178.729 kb on + strand, within GFF4684 at 178.729 kb on + strand, within GFF4684 at 178.729 kb on + strand, within GFF4684 at 178.729 kb on + strand, within GFF4684 at 178.730 kb on - strand, within GFF4684 at 178.730 kb on - strand, within GFF4684 at 178.730 kb on - strand, within GFF4684 at 178.951 kb on - strand, within GFF4684 at 178.987 kb on + strand, within GFF4684 at 179.116 kb on + strand, within GFF4684 at 179.170 kb on + strand at 179.170 kb on + strand at 179.170 kb on + strand at 179.170 kb on + strand at 179.170 kb on + strand at 179.170 kb on + strand at 179.171 kb on - strand at 179.171 kb on - strand at 179.171 kb on - strand at 179.171 kb on - strand at 179.177 kb on - strand at 179.238 kb on + strand at 179.238 kb on + strand at 179.238 kb on + strand at 179.239 kb on - strand at 179.239 kb on - strand at 179.239 kb on - strand at 179.239 kb on - strand at 179.293 kb on + strand at 179.294 kb on - strand at 179.459 kb on - strand at 179.485 kb on + strand at 179.486 kb on - strand at 179.491 kb on + strand at 179.524 kb on + strand at 179.524 kb on + strand at 179.525 kb on - strand at 179.525 kb on - strand at 179.561 kb on + strand at 179.562 kb on - strand at 179.572 kb on + strand at 179.572 kb on + strand at 179.572 kb on + strand at 179.572 kb on + strand at 179.572 kb on + strand at 179.572 kb on + strand at 179.573 kb on - strand at 179.573 kb on - strand at 179.594 kb on + strand at 179.594 kb on + strand at 179.668 kb on + strand at 179.669 kb on - strand at 179.814 kb on + strand, within GFF4685 at 179.814 kb on + strand, within GFF4685 at 179.814 kb on + strand, within GFF4685 at 179.814 kb on + strand, within GFF4685 at 179.814 kb on + strand, within GFF4685 at 179.814 kb on + strand, within GFF4685 at 179.814 kb on + strand, within GFF4685 at 179.814 kb on + strand, within GFF4685 at 179.814 kb on + strand, within GFF4685 at 179.814 kb on + strand, within GFF4685 at 179.815 kb on - strand, within GFF4685 at 179.815 kb on - strand, within GFF4685 at 179.815 kb on - strand, within GFF4685 at 179.815 kb on - strand, within GFF4685 at 179.815 kb on - strand, within GFF4685 at 179.815 kb on - strand, within GFF4685 at 179.815 kb on - strand, within GFF4685 at 179.815 kb on - strand, within GFF4685 at 179.815 kb on - strand, within GFF4685 at 179.815 kb on - strand, within GFF4685 at 179.815 kb on - strand, within GFF4685 at 179.815 kb on - strand, within GFF4685 at 179.877 kb on + strand, within GFF4685 at 179.877 kb on + strand, within GFF4685 at 179.877 kb on + strand, within GFF4685 at 179.878 kb on - strand, within GFF4685 at 179.878 kb on - strand, within GFF4685 at 179.878 kb on - strand, within GFF4685 at 179.989 kb on - strand, within GFF4685 at 180.012 kb on + strand, within GFF4685
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 177,630 + -1.7 177,631 - -0.3 177,631 - +1.0 177,631 - -1.2 177,894 + GFF4683 0.38 -0.3 177,895 - GFF4683 0.38 +0.6 178,131 + GFF4683 0.74 +0.1 178,131 + GFF4683 0.74 +0.2 178,198 + GFF4683 0.83 -2.3 178,198 + GFF4683 0.83 +0.1 178,198 + GFF4683 0.83 +0.8 178,198 + GFF4683 0.83 -0.5 178,198 + GFF4683 0.83 +0.4 178,199 - GFF4683 0.84 -2.0 178,199 - GFF4683 0.84 +1.3 178,199 - GFF4683 0.84 +0.0 178,201 - GFF4683 0.84 -0.1 178,205 - GFF4683 0.85 -0.0 178,205 - GFF4683 0.85 -1.2 178,250 + -0.5 178,346 + +0.6 178,380 + -0.5 178,381 - -0.1 178,434 + +0.4 178,434 + -0.7 178,491 + -0.1 178,492 - -0.1 178,501 + +1.0 178,502 - +1.0 178,502 - +0.6 178,588 + GFF4684 0.13 -1.8 178,651 + GFF4684 0.21 +0.0 178,651 + GFF4684 0.21 -1.0 178,652 - GFF4684 0.22 +0.0 178,729 + GFF4684 0.32 +0.9 178,729 + GFF4684 0.32 +0.5 178,729 + GFF4684 0.32 -1.4 178,729 + GFF4684 0.32 +0.9 178,729 + GFF4684 0.32 -1.0 178,729 + GFF4684 0.32 -1.5 178,730 - GFF4684 0.32 -2.2 178,730 - GFF4684 0.32 -0.8 178,730 - GFF4684 0.32 +0.6 178,951 - GFF4684 0.62 -0.2 178,987 + GFF4684 0.67 -2.1 179,116 + GFF4684 0.84 -1.0 179,170 + +0.6 179,170 + +1.6 179,170 + -2.1 179,170 + -2.1 179,170 + -1.0 179,170 + +1.0 179,171 - -0.4 179,171 - +0.5 179,171 - -2.0 179,171 - -0.4 179,177 - +0.3 179,238 + -0.1 179,238 + -0.4 179,238 + -0.6 179,239 - +1.4 179,239 - -0.6 179,239 - -0.3 179,239 - -0.4 179,293 + +0.6 179,294 - -1.1 179,459 - +0.5 179,485 + -2.4 179,486 - +0.7 179,491 + +0.3 179,524 + -1.8 179,524 + -0.2 179,525 - +0.1 179,525 - -2.5 179,561 + -1.0 179,562 - -0.5 179,572 + +0.3 179,572 + +0.6 179,572 + -0.1 179,572 + +0.9 179,572 + -1.3 179,572 + -0.1 179,573 - +0.6 179,573 - -3.0 179,594 + -0.1 179,594 + +0.1 179,668 + -1.5 179,669 - -0.2 179,814 + GFF4685 0.24 -1.0 179,814 + GFF4685 0.24 -0.9 179,814 + GFF4685 0.24 -0.2 179,814 + GFF4685 0.24 -0.1 179,814 + GFF4685 0.24 -0.2 179,814 + GFF4685 0.24 +0.5 179,814 + GFF4685 0.24 -1.9 179,814 + GFF4685 0.24 +0.5 179,814 + GFF4685 0.24 +0.4 179,814 + GFF4685 0.24 +0.6 179,815 - GFF4685 0.24 -1.1 179,815 - GFF4685 0.24 -0.1 179,815 - GFF4685 0.24 +0.6 179,815 - GFF4685 0.24 -0.6 179,815 - GFF4685 0.24 +0.3 179,815 - GFF4685 0.24 -0.1 179,815 - GFF4685 0.24 +0.6 179,815 - GFF4685 0.24 -1.4 179,815 - GFF4685 0.24 -0.3 179,815 - GFF4685 0.24 -0.5 179,815 - GFF4685 0.24 +0.1 179,815 - GFF4685 0.24 +0.1 179,877 + GFF4685 0.30 -0.4 179,877 + GFF4685 0.30 +0.9 179,877 + GFF4685 0.30 -0.3 179,878 - GFF4685 0.31 +0.0 179,878 - GFF4685 0.31 -1.2 179,878 - GFF4685 0.31 -0.3 179,989 - GFF4685 0.43 -0.8 180,012 + GFF4685 0.45 -0.4
Or see this region's nucleotide sequence