Strain Fitness in Pseudomonas sp. DMC3 around GFF4487

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4484 and GFF4485 overlap by 8 nucleotidesGFF4485 and GFF4486 are separated by 52 nucleotidesGFF4486 and GFF4487 are separated by 135 nucleotidesGFF4487 and GFF4488 are separated by 111 nucleotidesGFF4488 and GFF4489 overlap by 8 nucleotides GFF4484 - Tuberculostearic acid methyltransferase UfaA1, at 200,756 to 202,021 GFF4484 GFF4485 - hypothetical protein, at 202,014 to 202,505 GFF4485 GFF4486 - hypothetical protein, at 202,558 to 202,863 GFF4486 GFF4487 - Lipid A deacylase PagL, at 202,999 to 203,517 GFF4487 GFF4488 - Glutamate racemase, at 203,629 to 204,420 GFF4488 GFF4489 - Molybdopterin-synthase adenylyltransferase, at 204,413 to 205,168 GFF4489 Position (kb) 202 203 204Strain fitness (log2 ratio) -1 0 1 2at 202.087 kb on + strand, within GFF4485at 202.087 kb on + strand, within GFF4485at 202.087 kb on + strand, within GFF4485at 202.088 kb on - strand, within GFF4485at 202.088 kb on - strand, within GFF4485at 202.088 kb on - strand, within GFF4485at 202.375 kb on - strand, within GFF4485at 202.375 kb on - strand, within GFF4485at 202.377 kb on + strand, within GFF4485at 202.377 kb on + strand, within GFF4485at 202.377 kb on + strand, within GFF4485at 202.378 kb on - strand, within GFF4485at 202.378 kb on - strand, within GFF4485at 202.378 kb on - strand, within GFF4485at 202.378 kb on - strand, within GFF4485at 202.378 kb on - strand, within GFF4485at 202.414 kb on - strand, within GFF4485at 202.546 kb on + strandat 202.546 kb on + strandat 202.546 kb on + strandat 202.546 kb on + strandat 202.547 kb on - strandat 202.547 kb on - strandat 202.547 kb on - strandat 202.651 kb on - strand, within GFF4486at 202.678 kb on - strand, within GFF4486at 202.680 kb on - strand, within GFF4486at 202.771 kb on + strand, within GFF4486at 202.771 kb on + strand, within GFF4486at 202.771 kb on + strand, within GFF4486at 202.771 kb on + strand, within GFF4486at 202.771 kb on + strand, within GFF4486at 202.772 kb on - strand, within GFF4486at 202.772 kb on - strand, within GFF4486at 202.772 kb on - strand, within GFF4486at 202.772 kb on - strand, within GFF4486at 202.843 kb on - strandat 203.000 kb on + strandat 203.000 kb on + strandat 203.015 kb on + strandat 203.015 kb on + strandat 203.015 kb on + strandat 203.016 kb on - strandat 203.027 kb on + strandat 203.027 kb on + strandat 203.028 kb on - strandat 203.072 kb on + strand, within GFF4487at 203.073 kb on - strand, within GFF4487at 203.175 kb on - strand, within GFF4487at 203.219 kb on + strand, within GFF4487at 203.257 kb on + strand, within GFF4487at 203.257 kb on + strand, within GFF4487at 203.258 kb on - strand, within GFF4487at 203.258 kb on - strand, within GFF4487at 203.309 kb on + strand, within GFF4487at 203.309 kb on + strand, within GFF4487at 203.309 kb on + strand, within GFF4487at 203.310 kb on - strand, within GFF4487at 203.310 kb on - strand, within GFF4487at 203.315 kb on + strand, within GFF4487at 203.316 kb on - strand, within GFF4487at 203.316 kb on - strand, within GFF4487at 203.392 kb on + strand, within GFF4487at 203.392 kb on + strand, within GFF4487at 203.392 kb on + strand, within GFF4487at 203.393 kb on - strand, within GFF4487at 203.393 kb on - strand, within GFF4487at 203.393 kb on - strand, within GFF4487at 203.393 kb on - strand, within GFF4487at 203.399 kb on + strand, within GFF4487at 203.399 kb on + strand, within GFF4487at 203.400 kb on - strand, within GFF4487at 203.400 kb on - strand, within GFF4487at 203.422 kb on - strand, within GFF4487at 203.507 kb on - strandat 203.507 kb on - strandat 203.507 kb on - strandat 203.555 kb on + strandat 203.555 kb on + strandat 203.556 kb on - strandat 203.573 kb on + strandat 203.574 kb on - strandat 203.574 kb on - strandat 203.614 kb on + strandat 203.615 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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202,087 + GFF4485 0.15 -1.0
202,087 + GFF4485 0.15 -0.4
202,087 + GFF4485 0.15 +0.2
202,088 - GFF4485 0.15 -0.1
202,088 - GFF4485 0.15 +0.1
202,088 - GFF4485 0.15 -1.0
202,375 - GFF4485 0.73 +0.3
202,375 - GFF4485 0.73 +0.8
202,377 + GFF4485 0.74 +0.7
202,377 + GFF4485 0.74 -0.3
202,377 + GFF4485 0.74 +0.1
202,378 - GFF4485 0.74 -0.4
202,378 - GFF4485 0.74 +1.3
202,378 - GFF4485 0.74 -0.7
202,378 - GFF4485 0.74 -0.1
202,378 - GFF4485 0.74 -0.1
202,414 - GFF4485 0.81 +0.0
202,546 + +0.5
202,546 + +0.2
202,546 + +0.3
202,546 + -0.6
202,547 - +0.3
202,547 - -0.1
202,547 - -1.0
202,651 - GFF4486 0.30 -0.1
202,678 - GFF4486 0.39 -0.6
202,680 - GFF4486 0.40 -0.6
202,771 + GFF4486 0.70 +0.3
202,771 + GFF4486 0.70 +0.8
202,771 + GFF4486 0.70 -0.2
202,771 + GFF4486 0.70 +2.7
202,771 + GFF4486 0.70 -1.1
202,772 - GFF4486 0.70 -0.6
202,772 - GFF4486 0.70 -0.8
202,772 - GFF4486 0.70 -0.4
202,772 - GFF4486 0.70 -0.3
202,843 - +0.4
203,000 + -0.2
203,000 + -1.0
203,015 + -0.6
203,015 + +0.3
203,015 + -1.4
203,016 - -0.3
203,027 + +0.1
203,027 + -0.8
203,028 - -0.3
203,072 + GFF4487 0.14 +0.1
203,073 - GFF4487 0.14 +0.4
203,175 - GFF4487 0.34 -0.3
203,219 + GFF4487 0.42 -0.3
203,257 + GFF4487 0.50 +0.2
203,257 + GFF4487 0.50 +1.0
203,258 - GFF4487 0.50 +0.3
203,258 - GFF4487 0.50 +0.1
203,309 + GFF4487 0.60 -0.1
203,309 + GFF4487 0.60 -0.1
203,309 + GFF4487 0.60 +0.4
203,310 - GFF4487 0.60 -1.1
203,310 - GFF4487 0.60 -0.6
203,315 + GFF4487 0.61 -0.1
203,316 - GFF4487 0.61 -0.5
203,316 - GFF4487 0.61 -1.3
203,392 + GFF4487 0.76 +0.3
203,392 + GFF4487 0.76 -1.0
203,392 + GFF4487 0.76 +0.0
203,393 - GFF4487 0.76 -0.7
203,393 - GFF4487 0.76 -0.6
203,393 - GFF4487 0.76 +0.4
203,393 - GFF4487 0.76 +0.1
203,399 + GFF4487 0.77 -0.1
203,399 + GFF4487 0.77 +0.0
203,400 - GFF4487 0.77 -1.5
203,400 - GFF4487 0.77 -0.0
203,422 - GFF4487 0.82 +0.5
203,507 - +0.7
203,507 - -0.1
203,507 - +0.2
203,555 + -0.2
203,555 + +0.2
203,556 - +0.4
203,573 + +0.1
203,574 - +0.5
203,574 - -0.3
203,614 + +0.3
203,615 - -1.2

Or see this region's nucleotide sequence