Strain Fitness in Pseudomonas sp. DMC3 around GFF4443

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4442 and GFF4443 are separated by 223 nucleotidesGFF4443 and GFF4444 are separated by 165 nucleotides GFF4442 - HTH-type transcriptional regulator CdhR, at 157,167 to 158,162 GFF4442 GFF4443 - Cell division protein ZapE, at 158,386 to 159,405 GFF4443 GFF4444 - hypothetical protein, at 159,571 to 160,926 GFF4444 Position (kb) 158 159 160Strain fitness (log2 ratio) -2 -1 0 1at 157.513 kb on + strand, within GFF4442at 157.584 kb on + strand, within GFF4442at 157.602 kb on - strand, within GFF4442at 157.629 kb on + strand, within GFF4442at 157.629 kb on + strand, within GFF4442at 157.630 kb on - strand, within GFF4442at 157.630 kb on - strand, within GFF4442at 157.630 kb on - strand, within GFF4442at 157.707 kb on + strand, within GFF4442at 157.707 kb on + strand, within GFF4442at 157.707 kb on + strand, within GFF4442at 157.707 kb on + strand, within GFF4442at 157.707 kb on + strand, within GFF4442at 157.707 kb on + strand, within GFF4442at 157.707 kb on + strand, within GFF4442at 157.707 kb on + strand, within GFF4442at 157.707 kb on + strand, within GFF4442at 157.708 kb on - strand, within GFF4442at 157.708 kb on - strand, within GFF4442at 157.708 kb on - strand, within GFF4442at 157.708 kb on - strand, within GFF4442at 157.708 kb on - strand, within GFF4442at 157.713 kb on + strand, within GFF4442at 157.713 kb on + strand, within GFF4442at 157.713 kb on + strand, within GFF4442at 157.713 kb on + strand, within GFF4442at 157.714 kb on - strand, within GFF4442at 157.714 kb on - strand, within GFF4442at 157.714 kb on - strand, within GFF4442at 157.714 kb on - strand, within GFF4442at 157.714 kb on - strand, within GFF4442at 157.714 kb on - strand, within GFF4442at 157.792 kb on - strand, within GFF4442at 157.984 kb on - strand, within GFF4442at 157.984 kb on - strand, within GFF4442at 158.058 kb on + strand, within GFF4442at 158.058 kb on + strand, within GFF4442at 158.058 kb on + strand, within GFF4442at 158.058 kb on + strand, within GFF4442at 158.059 kb on - strand, within GFF4442at 158.059 kb on - strand, within GFF4442at 158.059 kb on - strand, within GFF4442at 158.059 kb on - strand, within GFF4442at 158.059 kb on - strand, within GFF4442at 158.483 kb on + strandat 158.537 kb on + strand, within GFF4443at 158.537 kb on + strand, within GFF4443at 158.538 kb on - strand, within GFF4443at 158.538 kb on - strand, within GFF4443at 158.538 kb on - strand, within GFF4443at 158.648 kb on + strand, within GFF4443at 158.648 kb on + strand, within GFF4443at 158.649 kb on - strand, within GFF4443at 158.649 kb on - strand, within GFF4443at 158.649 kb on - strand, within GFF4443at 158.972 kb on + strand, within GFF4443at 158.973 kb on - strand, within GFF4443at 159.260 kb on + strand, within GFF4443at 159.260 kb on + strand, within GFF4443at 159.260 kb on + strand, within GFF4443at 159.260 kb on + strand, within GFF4443at 159.260 kb on + strand, within GFF4443at 159.260 kb on + strand, within GFF4443at 159.260 kb on + strand, within GFF4443at 159.260 kb on + strand, within GFF4443at 159.260 kb on + strand, within GFF4443at 159.261 kb on - strand, within GFF4443at 159.261 kb on - strand, within GFF4443at 159.261 kb on - strand, within GFF4443at 159.261 kb on - strand, within GFF4443at 159.261 kb on - strand, within GFF4443at 159.293 kb on + strand, within GFF4443at 159.294 kb on - strand, within GFF4443at 159.294 kb on - strand, within GFF4443at 159.294 kb on - strand, within GFF4443at 159.383 kb on + strandat 159.470 kb on - strandat 159.470 kb on - strandat 159.481 kb on - strandat 159.481 kb on - strandat 159.519 kb on - strandat 159.519 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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157,513 + GFF4442 0.35 -0.1
157,584 + GFF4442 0.42 +0.4
157,602 - GFF4442 0.44 +0.1
157,629 + GFF4442 0.46 -0.6
157,629 + GFF4442 0.46 -1.9
157,630 - GFF4442 0.46 +1.3
157,630 - GFF4442 0.46 +0.3
157,630 - GFF4442 0.46 +1.5
157,707 + GFF4442 0.54 +0.3
157,707 + GFF4442 0.54 +0.2
157,707 + GFF4442 0.54 -0.7
157,707 + GFF4442 0.54 +0.3
157,707 + GFF4442 0.54 -1.4
157,707 + GFF4442 0.54 +0.1
157,707 + GFF4442 0.54 +0.6
157,707 + GFF4442 0.54 -0.2
157,707 + GFF4442 0.54 +0.8
157,708 - GFF4442 0.54 +0.5
157,708 - GFF4442 0.54 +0.3
157,708 - GFF4442 0.54 -0.8
157,708 - GFF4442 0.54 -0.1
157,708 - GFF4442 0.54 -0.3
157,713 + GFF4442 0.55 -0.2
157,713 + GFF4442 0.55 +0.0
157,713 + GFF4442 0.55 -1.1
157,713 + GFF4442 0.55 +0.6
157,714 - GFF4442 0.55 -0.3
157,714 - GFF4442 0.55 -0.6
157,714 - GFF4442 0.55 +0.2
157,714 - GFF4442 0.55 +0.6
157,714 - GFF4442 0.55 -1.1
157,714 - GFF4442 0.55 -1.3
157,792 - GFF4442 0.63 +0.0
157,984 - GFF4442 0.82 +0.9
157,984 - GFF4442 0.82 -0.3
158,058 + GFF4442 0.89 -0.2
158,058 + GFF4442 0.89 +0.4
158,058 + GFF4442 0.89 -1.3
158,058 + GFF4442 0.89 -0.4
158,059 - GFF4442 0.90 -1.2
158,059 - GFF4442 0.90 -0.2
158,059 - GFF4442 0.90 -2.1
158,059 - GFF4442 0.90 +0.0
158,059 - GFF4442 0.90 +1.0
158,483 + -2.1
158,537 + GFF4443 0.15 +0.7
158,537 + GFF4443 0.15 -0.5
158,538 - GFF4443 0.15 -0.6
158,538 - GFF4443 0.15 -0.1
158,538 - GFF4443 0.15 -0.9
158,648 + GFF4443 0.26 -1.6
158,648 + GFF4443 0.26 -0.8
158,649 - GFF4443 0.26 +0.8
158,649 - GFF4443 0.26 -0.5
158,649 - GFF4443 0.26 +0.5
158,972 + GFF4443 0.57 -0.3
158,973 - GFF4443 0.58 -0.6
159,260 + GFF4443 0.86 +0.4
159,260 + GFF4443 0.86 -0.3
159,260 + GFF4443 0.86 +1.0
159,260 + GFF4443 0.86 -1.8
159,260 + GFF4443 0.86 -2.1
159,260 + GFF4443 0.86 -1.9
159,260 + GFF4443 0.86 -0.6
159,260 + GFF4443 0.86 -1.5
159,260 + GFF4443 0.86 -1.5
159,261 - GFF4443 0.86 -0.3
159,261 - GFF4443 0.86 -0.0
159,261 - GFF4443 0.86 -1.5
159,261 - GFF4443 0.86 -0.3
159,261 - GFF4443 0.86 -1.5
159,293 + GFF4443 0.89 -0.6
159,294 - GFF4443 0.89 -0.6
159,294 - GFF4443 0.89 -1.1
159,294 - GFF4443 0.89 +1.7
159,383 + +0.4
159,470 - -1.5
159,470 - +0.4
159,481 - +0.4
159,481 - -1.0
159,519 - -0.1
159,519 - -0.8

Or see this region's nucleotide sequence