Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4431 and GFF4432 overlap by 4 nucleotides GFF4432 and GFF4433 are separated by 49 nucleotides GFF4433 and GFF4434 are separated by 16 nucleotides GFF4434 and GFF4435 are separated by 146 nucleotides
GFF4431 - Phosphoheptose isomerase, at 148,330 to 148,923
GFF4431
GFF4432 - hypothetical protein, at 148,920 to 149,498
GFF4432
GFF4433 - Stringent starvation protein B, at 149,548 to 149,961
GFF4433
GFF4434 - Stringent starvation protein A, at 149,978 to 150,595
GFF4434
GFF4435 - Ammonia monooxygenase gamma subunit, at 150,742 to 151,524
GFF4435
Position (kb) 149
150 Strain fitness (log2 ratio) -2
-1
0
1
2 at 148.929 kb on - strand at 149.036 kb on + strand, within GFF4432 at 149.036 kb on + strand, within GFF4432 at 149.037 kb on - strand, within GFF4432 at 149.247 kb on - strand, within GFF4432 at 149.392 kb on - strand, within GFF4432 at 149.488 kb on - strand at 149.488 kb on - strand at 149.696 kb on + strand, within GFF4433 at 149.697 kb on - strand, within GFF4433 at 149.726 kb on + strand, within GFF4433 at 149.727 kb on - strand, within GFF4433 at 149.727 kb on - strand, within GFF4433 at 149.727 kb on - strand, within GFF4433 at 149.942 kb on + strand at 149.942 kb on + strand at 149.942 kb on + strand at 149.942 kb on + strand at 149.942 kb on + strand at 149.942 kb on + strand at 149.943 kb on - strand at 149.943 kb on - strand at 149.943 kb on - strand at 149.980 kb on - strand at 150.046 kb on + strand, within GFF4434 at 150.046 kb on + strand, within GFF4434 at 150.046 kb on + strand, within GFF4434 at 150.047 kb on - strand, within GFF4434 at 150.047 kb on - strand, within GFF4434 at 150.047 kb on - strand, within GFF4434 at 150.047 kb on - strand, within GFF4434 at 150.047 kb on - strand, within GFF4434 at 150.047 kb on - strand, within GFF4434 at 150.047 kb on - strand, within GFF4434 at 150.048 kb on + strand, within GFF4434 at 150.048 kb on + strand, within GFF4434 at 150.048 kb on + strand, within GFF4434 at 150.048 kb on + strand, within GFF4434 at 150.048 kb on + strand, within GFF4434 at 150.049 kb on - strand, within GFF4434 at 150.049 kb on - strand, within GFF4434 at 150.049 kb on - strand, within GFF4434 at 150.049 kb on - strand, within GFF4434 at 150.110 kb on + strand, within GFF4434 at 150.116 kb on + strand, within GFF4434 at 150.117 kb on - strand, within GFF4434 at 150.119 kb on + strand, within GFF4434 at 150.119 kb on + strand, within GFF4434 at 150.119 kb on + strand, within GFF4434 at 150.119 kb on + strand, within GFF4434 at 150.120 kb on - strand, within GFF4434 at 150.375 kb on + strand, within GFF4434 at 150.489 kb on + strand, within GFF4434 at 150.489 kb on + strand, within GFF4434 at 150.546 kb on + strand at 150.546 kb on + strand at 150.546 kb on + strand at 150.546 kb on + strand at 150.547 kb on - strand at 150.547 kb on - strand at 150.740 kb on + strand at 150.740 kb on + strand at 150.741 kb on - strand at 150.741 kb on - strand at 150.761 kb on + strand at 150.806 kb on + strand at 150.806 kb on + strand at 150.807 kb on - strand at 150.818 kb on + strand at 150.818 kb on + strand at 150.818 kb on + strand at 150.818 kb on + strand at 150.819 kb on - strand at 150.819 kb on - strand at 150.819 kb on - strand at 150.819 kb on - strand at 150.819 kb on - strand at 150.819 kb on - strand at 150.819 kb on - strand at 150.819 kb on - strand at 150.819 kb on - strand at 150.819 kb on - strand at 150.822 kb on + strand, within GFF4435 at 150.822 kb on + strand, within GFF4435 at 150.863 kb on + strand, within GFF4435 at 150.864 kb on - strand, within GFF4435 at 150.878 kb on - strand, within GFF4435
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 148,929 - -0.9 149,036 + GFF4432 0.20 -0.8 149,036 + GFF4432 0.20 +0.5 149,037 - GFF4432 0.20 +1.0 149,247 - GFF4432 0.56 +0.2 149,392 - GFF4432 0.82 -0.0 149,488 - -0.1 149,488 - -0.7 149,696 + GFF4433 0.36 -0.5 149,697 - GFF4433 0.36 -0.7 149,726 + GFF4433 0.43 -1.8 149,727 - GFF4433 0.43 -0.2 149,727 - GFF4433 0.43 -0.5 149,727 - GFF4433 0.43 -1.0 149,942 + -0.4 149,942 + +0.5 149,942 + -0.6 149,942 + -0.3 149,942 + -0.0 149,942 + -0.6 149,943 - -0.9 149,943 - -0.8 149,943 - -0.8 149,980 - -0.2 150,046 + GFF4434 0.11 -0.9 150,046 + GFF4434 0.11 -0.4 150,046 + GFF4434 0.11 -0.3 150,047 - GFF4434 0.11 +0.0 150,047 - GFF4434 0.11 +0.9 150,047 - GFF4434 0.11 -1.7 150,047 - GFF4434 0.11 +0.4 150,047 - GFF4434 0.11 +0.3 150,047 - GFF4434 0.11 -1.4 150,047 - GFF4434 0.11 -1.0 150,048 + GFF4434 0.11 -1.5 150,048 + GFF4434 0.11 -1.9 150,048 + GFF4434 0.11 -0.1 150,048 + GFF4434 0.11 +0.0 150,048 + GFF4434 0.11 -1.2 150,049 - GFF4434 0.11 -0.1 150,049 - GFF4434 0.11 -2.0 150,049 - GFF4434 0.11 +0.1 150,049 - GFF4434 0.11 -0.6 150,110 + GFF4434 0.21 -0.2 150,116 + GFF4434 0.22 -0.5 150,117 - GFF4434 0.22 -2.2 150,119 + GFF4434 0.23 +0.3 150,119 + GFF4434 0.23 +0.1 150,119 + GFF4434 0.23 +0.1 150,119 + GFF4434 0.23 +1.3 150,120 - GFF4434 0.23 -0.9 150,375 + GFF4434 0.64 -1.0 150,489 + GFF4434 0.83 +0.5 150,489 + GFF4434 0.83 +0.0 150,546 + -0.9 150,546 + -0.6 150,546 + -1.2 150,546 + -2.5 150,547 - -0.3 150,547 - -2.7 150,740 + -0.8 150,740 + +1.2 150,741 - +0.3 150,741 - -0.0 150,761 + -1.1 150,806 + +1.3 150,806 + -0.5 150,807 - -0.9 150,818 + -0.6 150,818 + -1.8 150,818 + -0.6 150,818 + -0.6 150,819 - -0.3 150,819 - -0.3 150,819 - +1.7 150,819 - +0.8 150,819 - +0.4 150,819 - +0.8 150,819 - +2.0 150,819 - +0.7 150,819 - -0.3 150,819 - -0.3 150,822 + GFF4435 0.10 -0.6 150,822 + GFF4435 0.10 -0.6 150,863 + GFF4435 0.15 -1.1 150,864 - GFF4435 0.16 -1.5 150,878 - GFF4435 0.17 +0.4
Or see this region's nucleotide sequence