Strain Fitness in Pseudomonas sp. DMC3 around GFF4394

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4391 and GFF4392 are separated by 10 nucleotidesGFF4392 and GFF4393 overlap by 1 nucleotidesGFF4393 and GFF4394 are separated by 3 nucleotidesGFF4394 and GFF4395 are separated by 3 nucleotides GFF4391 - Protoheme IX farnesyltransferase, at 102,075 to 102,962 GFF4391 GFF4392 - Cytochrome bo(3) ubiquinol oxidase subunit 4, at 102,973 to 103,308 GFF4392 GFF4393 - Cytochrome bo(3) ubiquinol oxidase subunit 3, at 103,308 to 103,931 GFF4393 GFF4394 - Cytochrome bo(3) ubiquinol oxidase subunit 1, at 103,935 to 105,965 GFF4394 GFF4395 - Cytochrome bo(3) ubiquinol oxidase subunit 2, at 105,969 to 106,910 GFF4395 Position (kb) 103 104 105 106Strain fitness (log2 ratio) -2 -1 0 1 2at 102.970 kb on - strandat 102.989 kb on + strandat 102.990 kb on - strandat 102.990 kb on - strandat 102.990 kb on - strandat 103.113 kb on - strand, within GFF4392at 103.113 kb on - strand, within GFF4392at 103.190 kb on + strand, within GFF4392at 103.327 kb on + strandat 103.328 kb on - strandat 103.439 kb on - strand, within GFF4393at 103.784 kb on - strand, within GFF4393at 104.052 kb on - strandat 104.650 kb on + strand, within GFF4394at 105.013 kb on + strand, within GFF4394at 105.103 kb on + strand, within GFF4394at 105.397 kb on + strand, within GFF4394at 105.397 kb on + strand, within GFF4394at 105.397 kb on + strand, within GFF4394at 105.400 kb on + strand, within GFF4394at 105.400 kb on + strand, within GFF4394at 105.424 kb on + strand, within GFF4394at 105.670 kb on + strand, within GFF4394at 105.670 kb on + strand, within GFF4394at 105.671 kb on - strand, within GFF4394at 105.784 kb on + strandat 105.784 kb on + strandat 105.784 kb on + strandat 105.785 kb on - strandat 105.839 kb on - strandat 105.856 kb on + strandat 106.071 kb on - strand, within GFF4395at 106.071 kb on - strand, within GFF4395at 106.071 kb on - strand, within GFF4395at 106.071 kb on - strand, within GFF4395at 106.078 kb on + strand, within GFF4395at 106.078 kb on + strand, within GFF4395at 106.078 kb on + strand, within GFF4395at 106.079 kb on - strand, within GFF4395at 106.079 kb on - strand, within GFF4395at 106.079 kb on - strand, within GFF4395at 106.190 kb on + strand, within GFF4395at 106.247 kb on + strand, within GFF4395at 106.247 kb on + strand, within GFF4395at 106.247 kb on + strand, within GFF4395at 106.285 kb on + strand, within GFF4395at 106.286 kb on - strand, within GFF4395at 106.299 kb on - strand, within GFF4395at 106.363 kb on + strand, within GFF4395at 106.364 kb on - strand, within GFF4395at 106.591 kb on + strand, within GFF4395at 106.591 kb on + strand, within GFF4395at 106.591 kb on + strand, within GFF4395at 106.591 kb on + strand, within GFF4395at 106.591 kb on + strand, within GFF4395at 106.591 kb on + strand, within GFF4395at 106.592 kb on - strand, within GFF4395at 106.592 kb on - strand, within GFF4395at 106.592 kb on - strand, within GFF4395at 106.592 kb on - strand, within GFF4395at 106.592 kb on - strand, within GFF4395at 106.592 kb on - strand, within GFF4395at 106.600 kb on + strand, within GFF4395at 106.600 kb on + strand, within GFF4395at 106.681 kb on + strand, within GFF4395at 106.875 kb on + strandat 106.881 kb on + strandat 106.881 kb on + strandat 106.881 kb on + strandat 106.881 kb on + strandat 106.881 kb on + strandat 106.881 kb on + strandat 106.882 kb on - strandat 106.882 kb on - strandat 106.882 kb on - strandat 106.884 kb on + strandat 106.885 kb on - strandat 106.885 kb on - strandat 106.905 kb on - strandat 106.922 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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102,970 - -0.9
102,989 + -0.3
102,990 - -2.1
102,990 - -0.3
102,990 - -0.6
103,113 - GFF4392 0.42 -0.3
103,113 - GFF4392 0.42 -0.5
103,190 + GFF4392 0.65 -0.3
103,327 + -0.6
103,328 - -0.3
103,439 - GFF4393 0.21 -0.3
103,784 - GFF4393 0.76 +0.4
104,052 - -0.3
104,650 + GFF4394 0.35 -1.1
105,013 + GFF4394 0.53 -0.3
105,103 + GFF4394 0.58 -0.3
105,397 + GFF4394 0.72 -0.6
105,397 + GFF4394 0.72 -0.3
105,397 + GFF4394 0.72 -0.6
105,400 + GFF4394 0.72 -0.3
105,400 + GFF4394 0.72 -1.3
105,424 + GFF4394 0.73 +1.7
105,670 + GFF4394 0.85 -0.6
105,670 + GFF4394 0.85 +2.3
105,671 - GFF4394 0.85 -0.1
105,784 + +0.4
105,784 + -0.6
105,784 + -0.3
105,785 - -0.3
105,839 - -0.1
105,856 + -0.3
106,071 - GFF4395 0.11 +0.3
106,071 - GFF4395 0.11 -0.3
106,071 - GFF4395 0.11 -0.3
106,071 - GFF4395 0.11 -0.3
106,078 + GFF4395 0.12 -0.5
106,078 + GFF4395 0.12 +0.3
106,078 + GFF4395 0.12 +0.1
106,079 - GFF4395 0.12 -0.6
106,079 - GFF4395 0.12 +0.2
106,079 - GFF4395 0.12 +1.7
106,190 + GFF4395 0.23 -0.8
106,247 + GFF4395 0.30 -1.1
106,247 + GFF4395 0.30 +0.1
106,247 + GFF4395 0.30 -1.6
106,285 + GFF4395 0.34 -0.3
106,286 - GFF4395 0.34 -1.8
106,299 - GFF4395 0.35 +0.7
106,363 + GFF4395 0.42 +0.4
106,364 - GFF4395 0.42 -0.3
106,591 + GFF4395 0.66 -0.6
106,591 + GFF4395 0.66 +1.0
106,591 + GFF4395 0.66 +0.1
106,591 + GFF4395 0.66 +0.3
106,591 + GFF4395 0.66 -1.3
106,591 + GFF4395 0.66 -0.3
106,592 - GFF4395 0.66 -0.3
106,592 - GFF4395 0.66 -0.3
106,592 - GFF4395 0.66 -0.5
106,592 - GFF4395 0.66 -1.3
106,592 - GFF4395 0.66 -1.1
106,592 - GFF4395 0.66 -0.3
106,600 + GFF4395 0.67 -0.3
106,600 + GFF4395 0.67 -1.3
106,681 + GFF4395 0.76 -0.3
106,875 + +0.7
106,881 + -0.1
106,881 + +1.7
106,881 + -0.9
106,881 + -0.6
106,881 + -0.9
106,881 + -0.8
106,882 - -0.5
106,882 - -1.1
106,882 - -0.5
106,884 + +0.7
106,885 - -0.9
106,885 - -0.6
106,905 - -0.0
106,922 + +0.4

Or see this region's nucleotide sequence