Strain Fitness in Pseudomonas sp. DMC3 around GFF4391

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4389 and GFF4390 are separated by 256 nucleotidesGFF4390 and GFF4391 are separated by 236 nucleotidesGFF4391 and GFF4392 are separated by 10 nucleotidesGFF4392 and GFF4393 overlap by 1 nucleotidesGFF4393 and GFF4394 are separated by 3 nucleotides GFF4389 - hypothetical protein, at 100,389 to 101,090 GFF4389 GFF4390 - hypothetical protein, at 101,347 to 101,838 GFF4390 GFF4391 - Protoheme IX farnesyltransferase, at 102,075 to 102,962 GFF4391 GFF4392 - Cytochrome bo(3) ubiquinol oxidase subunit 4, at 102,973 to 103,308 GFF4392 GFF4393 - Cytochrome bo(3) ubiquinol oxidase subunit 3, at 103,308 to 103,931 GFF4393 GFF4394 - Cytochrome bo(3) ubiquinol oxidase subunit 1, at 103,935 to 105,965 GFF4394 Position (kb) 102 103Strain fitness (log2 ratio) -2 -1 0 1at 101.088 kb on + strandat 101.257 kb on - strandat 101.271 kb on + strandat 101.271 kb on + strandat 101.271 kb on + strandat 101.271 kb on + strandat 101.271 kb on + strandat 101.271 kb on + strandat 101.271 kb on + strandat 101.272 kb on - strandat 101.272 kb on - strandat 101.272 kb on - strandat 101.273 kb on + strandat 101.321 kb on - strandat 101.321 kb on - strandat 101.321 kb on - strandat 101.411 kb on + strand, within GFF4390at 101.433 kb on + strand, within GFF4390at 101.433 kb on + strand, within GFF4390at 101.528 kb on + strand, within GFF4390at 101.528 kb on + strand, within GFF4390at 101.529 kb on - strand, within GFF4390at 101.529 kb on - strand, within GFF4390at 101.529 kb on - strand, within GFF4390at 101.529 kb on - strand, within GFF4390at 101.529 kb on - strand, within GFF4390at 101.711 kb on + strand, within GFF4390at 101.711 kb on + strand, within GFF4390at 101.712 kb on - strand, within GFF4390at 101.712 kb on - strand, within GFF4390at 101.712 kb on - strand, within GFF4390at 101.712 kb on - strand, within GFF4390at 101.712 kb on - strand, within GFF4390at 101.744 kb on + strand, within GFF4390at 101.771 kb on + strand, within GFF4390at 101.771 kb on + strand, within GFF4390at 101.772 kb on - strand, within GFF4390at 101.780 kb on + strand, within GFF4390at 101.781 kb on - strand, within GFF4390at 101.806 kb on - strandat 101.903 kb on + strandat 101.903 kb on + strandat 101.903 kb on + strandat 101.903 kb on + strandat 101.904 kb on - strandat 101.904 kb on - strandat 101.904 kb on - strandat 101.904 kb on - strandat 101.906 kb on + strandat 101.906 kb on + strandat 101.906 kb on + strandat 101.907 kb on - strandat 101.907 kb on - strandat 101.907 kb on - strandat 101.930 kb on + strandat 101.930 kb on + strandat 101.930 kb on + strandat 101.930 kb on + strandat 101.930 kb on + strandat 101.931 kb on - strandat 102.008 kb on + strandat 102.077 kb on - strandat 102.077 kb on - strandat 102.226 kb on + strand, within GFF4391at 102.226 kb on + strand, within GFF4391at 102.227 kb on - strand, within GFF4391at 102.235 kb on + strand, within GFF4391at 102.265 kb on + strand, within GFF4391at 102.328 kb on + strand, within GFF4391at 102.400 kb on + strand, within GFF4391at 102.584 kb on - strand, within GFF4391at 102.592 kb on + strand, within GFF4391at 102.593 kb on - strand, within GFF4391at 102.604 kb on + strand, within GFF4391at 102.658 kb on + strand, within GFF4391at 102.658 kb on + strand, within GFF4391at 102.658 kb on + strand, within GFF4391at 102.659 kb on - strand, within GFF4391at 102.659 kb on - strand, within GFF4391at 102.827 kb on + strand, within GFF4391at 102.828 kb on - strand, within GFF4391at 102.970 kb on - strandat 102.989 kb on + strandat 102.990 kb on - strandat 102.990 kb on - strandat 102.990 kb on - strandat 103.113 kb on - strand, within GFF4392at 103.113 kb on - strand, within GFF4392at 103.190 kb on + strand, within GFF4392at 103.327 kb on + strandat 103.328 kb on - strandat 103.439 kb on - strand, within GFF4393at 103.784 kb on - strand, within GFF4393

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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101,088 + -0.8
101,257 - -0.4
101,271 + -0.6
101,271 + -0.0
101,271 + -0.2
101,271 + -0.1
101,271 + -1.6
101,271 + -0.4
101,271 + -0.6
101,272 - -0.6
101,272 - -0.4
101,272 - -0.1
101,273 + -0.5
101,321 - +0.5
101,321 - -0.2
101,321 - +0.6
101,411 + GFF4390 0.13 -0.9
101,433 + GFF4390 0.17 -0.3
101,433 + GFF4390 0.17 -0.2
101,528 + GFF4390 0.37 -0.6
101,528 + GFF4390 0.37 +0.0
101,529 - GFF4390 0.37 +0.8
101,529 - GFF4390 0.37 -0.1
101,529 - GFF4390 0.37 -0.5
101,529 - GFF4390 0.37 +0.4
101,529 - GFF4390 0.37 +0.6
101,711 + GFF4390 0.74 -0.0
101,711 + GFF4390 0.74 -0.7
101,712 - GFF4390 0.74 -0.2
101,712 - GFF4390 0.74 +0.3
101,712 - GFF4390 0.74 -0.6
101,712 - GFF4390 0.74 -0.3
101,712 - GFF4390 0.74 +0.4
101,744 + GFF4390 0.81 +0.5
101,771 + GFF4390 0.86 +0.3
101,771 + GFF4390 0.86 -1.5
101,772 - GFF4390 0.86 -0.0
101,780 + GFF4390 0.88 -0.0
101,781 - GFF4390 0.88 -0.3
101,806 - -1.1
101,903 + -1.5
101,903 + -0.2
101,903 + -0.1
101,903 + -0.2
101,904 - -2.1
101,904 - -1.5
101,904 - -0.8
101,904 - -1.4
101,906 + -0.3
101,906 + +0.9
101,906 + -0.4
101,907 - -0.4
101,907 - -0.9
101,907 - +0.0
101,930 + +0.3
101,930 + -0.4
101,930 + +0.4
101,930 + -0.3
101,930 + +1.3
101,931 - -0.2
102,008 + -0.0
102,077 - +0.2
102,077 - -0.4
102,226 + GFF4391 0.17 -0.9
102,226 + GFF4391 0.17 -0.5
102,227 - GFF4391 0.17 -1.5
102,235 + GFF4391 0.18 +0.7
102,265 + GFF4391 0.21 +0.5
102,328 + GFF4391 0.28 -0.6
102,400 + GFF4391 0.37 +0.1
102,584 - GFF4391 0.57 -0.3
102,592 + GFF4391 0.58 -0.1
102,593 - GFF4391 0.58 -0.3
102,604 + GFF4391 0.60 -0.3
102,658 + GFF4391 0.66 +1.3
102,658 + GFF4391 0.66 -0.3
102,658 + GFF4391 0.66 -0.9
102,659 - GFF4391 0.66 +0.4
102,659 - GFF4391 0.66 -0.9
102,827 + GFF4391 0.85 +0.4
102,828 - GFF4391 0.85 -0.6
102,970 - -0.9
102,989 + -0.3
102,990 - -2.1
102,990 - -0.3
102,990 - -0.6
103,113 - GFF4392 0.42 -0.3
103,113 - GFF4392 0.42 -0.5
103,190 + GFF4392 0.65 -0.3
103,327 + -0.6
103,328 - -0.3
103,439 - GFF4393 0.21 -0.3
103,784 - GFF4393 0.76 +0.4

Or see this region's nucleotide sequence