Strain Fitness in Pseudomonas sp. DMC3 around GFF4360

Experiment: D,L-Lactate and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4359 and GFF4360 overlap by 4 nucleotidesGFF4360 and GFF4361 are separated by 357 nucleotides GFF4359 - Queuine tRNA-ribosyltransferase, at 72,520 to 73,653 GFF4359 GFF4360 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 73,650 to 74,714 GFF4360 GFF4361 - Prophage integrase IntA, at 75,072 to 76,313 GFF4361 Position (kb) 73 74 75Strain fitness (log2 ratio) -3 -2 -1 0 1at 72.651 kb on + strand, within GFF4359at 72.651 kb on + strand, within GFF4359at 72.651 kb on + strand, within GFF4359at 72.651 kb on + strand, within GFF4359at 72.652 kb on - strand, within GFF4359at 72.728 kb on + strand, within GFF4359at 72.728 kb on + strand, within GFF4359at 72.728 kb on + strand, within GFF4359at 72.728 kb on + strand, within GFF4359at 72.728 kb on + strand, within GFF4359at 72.729 kb on - strand, within GFF4359at 72.729 kb on - strand, within GFF4359at 72.913 kb on - strand, within GFF4359at 72.917 kb on + strand, within GFF4359at 72.953 kb on + strand, within GFF4359at 72.954 kb on - strand, within GFF4359at 73.532 kb on + strand, within GFF4359at 73.532 kb on + strand, within GFF4359at 73.532 kb on + strand, within GFF4359at 73.532 kb on + strand, within GFF4359at 73.533 kb on - strand, within GFF4359at 73.533 kb on - strand, within GFF4359at 73.765 kb on + strand, within GFF4360at 73.765 kb on + strand, within GFF4360at 73.766 kb on - strand, within GFF4360at 73.883 kb on - strand, within GFF4360at 73.886 kb on + strand, within GFF4360at 73.886 kb on + strand, within GFF4360at 73.886 kb on + strand, within GFF4360at 73.887 kb on - strand, within GFF4360at 73.887 kb on - strand, within GFF4360at 73.887 kb on - strand, within GFF4360at 73.887 kb on - strand, within GFF4360at 74.221 kb on + strand, within GFF4360at 74.222 kb on - strand, within GFF4360at 74.268 kb on + strand, within GFF4360at 74.268 kb on + strand, within GFF4360at 74.268 kb on + strand, within GFF4360at 74.269 kb on - strand, within GFF4360at 74.269 kb on - strand, within GFF4360at 74.269 kb on - strand, within GFF4360at 74.269 kb on - strand, within GFF4360at 74.269 kb on - strand, within GFF4360at 74.269 kb on - strand, within GFF4360at 74.269 kb on - strand, within GFF4360at 74.269 kb on - strand, within GFF4360at 74.270 kb on + strand, within GFF4360at 74.270 kb on + strand, within GFF4360at 74.270 kb on + strand, within GFF4360at 74.270 kb on + strand, within GFF4360at 74.271 kb on - strand, within GFF4360at 74.271 kb on - strand, within GFF4360at 74.271 kb on - strand, within GFF4360at 74.271 kb on - strand, within GFF4360at 74.271 kb on - strand, within GFF4360at 74.271 kb on - strand, within GFF4360at 74.272 kb on + strand, within GFF4360at 74.272 kb on + strand, within GFF4360at 74.272 kb on + strand, within GFF4360at 74.272 kb on + strand, within GFF4360at 74.272 kb on + strand, within GFF4360at 74.272 kb on + strand, within GFF4360at 74.272 kb on + strand, within GFF4360at 74.273 kb on - strand, within GFF4360at 74.273 kb on - strand, within GFF4360at 74.273 kb on - strand, within GFF4360at 74.273 kb on - strand, within GFF4360at 74.273 kb on - strand, within GFF4360at 74.273 kb on - strand, within GFF4360at 74.273 kb on - strand, within GFF4360at 74.535 kb on - strand, within GFF4360at 74.696 kb on + strandat 74.697 kb on - strandat 74.697 kb on - strandat 74.728 kb on + strandat 74.755 kb on + strandat 74.755 kb on + strandat 74.911 kb on - strandat 74.911 kb on - strandat 74.917 kb on - strandat 75.016 kb on + strandat 75.016 kb on + strandat 75.017 kb on - strandat 75.017 kb on - strandat 75.036 kb on + strandat 75.066 kb on - strandat 75.172 kb on + strandat 75.173 kb on - strandat 75.174 kb on + strandat 75.174 kb on + strandat 75.174 kb on + strandat 75.174 kb on + strandat 75.175 kb on - strandat 75.175 kb on - strandat 75.236 kb on + strand, within GFF4361at 75.236 kb on + strand, within GFF4361at 75.310 kb on + strand, within GFF4361at 75.310 kb on + strand, within GFF4361at 75.310 kb on + strand, within GFF4361at 75.311 kb on - strand, within GFF4361at 75.311 kb on - strand, within GFF4361at 75.311 kb on - strand, within GFF4361at 75.319 kb on + strand, within GFF4361at 75.319 kb on + strand, within GFF4361at 75.319 kb on + strand, within GFF4361at 75.465 kb on - strand, within GFF4361at 75.477 kb on + strand, within GFF4361at 75.477 kb on + strand, within GFF4361at 75.477 kb on + strand, within GFF4361at 75.478 kb on - strand, within GFF4361at 75.478 kb on - strand, within GFF4361at 75.478 kb on - strand, within GFF4361at 75.478 kb on - strand, within GFF4361at 75.478 kb on - strand, within GFF4361at 75.530 kb on - strand, within GFF4361at 75.584 kb on + strand, within GFF4361at 75.585 kb on - strand, within GFF4361at 75.669 kb on - strand, within GFF4361at 75.676 kb on + strand, within GFF4361at 75.701 kb on + strand, within GFF4361at 75.701 kb on + strand, within GFF4361at 75.701 kb on + strand, within GFF4361at 75.701 kb on + strand, within GFF4361at 75.702 kb on - strand, within GFF4361at 75.702 kb on - strand, within GFF4361

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
remove
72,651 + GFF4359 0.12 +0.1
72,651 + GFF4359 0.12 -0.3
72,651 + GFF4359 0.12 -1.8
72,651 + GFF4359 0.12 -1.6
72,652 - GFF4359 0.12 -0.9
72,728 + GFF4359 0.18 -0.6
72,728 + GFF4359 0.18 +1.3
72,728 + GFF4359 0.18 -1.2
72,728 + GFF4359 0.18 -0.2
72,728 + GFF4359 0.18 -0.1
72,729 - GFF4359 0.18 -0.9
72,729 - GFF4359 0.18 -0.6
72,913 - GFF4359 0.35 +0.2
72,917 + GFF4359 0.35 +0.1
72,953 + GFF4359 0.38 -0.6
72,954 - GFF4359 0.38 +0.7
73,532 + GFF4359 0.89 -0.0
73,532 + GFF4359 0.89 -2.0
73,532 + GFF4359 0.89 -1.3
73,532 + GFF4359 0.89 -0.6
73,533 - GFF4359 0.89 +0.7
73,533 - GFF4359 0.89 +0.1
73,765 + GFF4360 0.11 -1.1
73,765 + GFF4360 0.11 +0.1
73,766 - GFF4360 0.11 -0.3
73,883 - GFF4360 0.22 -0.9
73,886 + GFF4360 0.22 -1.6
73,886 + GFF4360 0.22 -0.3
73,886 + GFF4360 0.22 -0.2
73,887 - GFF4360 0.22 -1.0
73,887 - GFF4360 0.22 +0.2
73,887 - GFF4360 0.22 +0.5
73,887 - GFF4360 0.22 +0.4
74,221 + GFF4360 0.54 +1.1
74,222 - GFF4360 0.54 -0.1
74,268 + GFF4360 0.58 -0.0
74,268 + GFF4360 0.58 -0.0
74,268 + GFF4360 0.58 -1.4
74,269 - GFF4360 0.58 +0.8
74,269 - GFF4360 0.58 +0.1
74,269 - GFF4360 0.58 -0.1
74,269 - GFF4360 0.58 -1.1
74,269 - GFF4360 0.58 -0.5
74,269 - GFF4360 0.58 -0.8
74,269 - GFF4360 0.58 -1.5
74,269 - GFF4360 0.58 -0.0
74,270 + GFF4360 0.58 -2.1
74,270 + GFF4360 0.58 -0.3
74,270 + GFF4360 0.58 -0.7
74,270 + GFF4360 0.58 -0.9
74,271 - GFF4360 0.58 -0.5
74,271 - GFF4360 0.58 -0.6
74,271 - GFF4360 0.58 +0.4
74,271 - GFF4360 0.58 -0.3
74,271 - GFF4360 0.58 -0.1
74,271 - GFF4360 0.58 -0.2
74,272 + GFF4360 0.58 -0.1
74,272 + GFF4360 0.58 -0.6
74,272 + GFF4360 0.58 -0.0
74,272 + GFF4360 0.58 -0.3
74,272 + GFF4360 0.58 +0.6
74,272 + GFF4360 0.58 +0.7
74,272 + GFF4360 0.58 -1.3
74,273 - GFF4360 0.58 +1.3
74,273 - GFF4360 0.58 -1.1
74,273 - GFF4360 0.58 -0.9
74,273 - GFF4360 0.58 -0.6
74,273 - GFF4360 0.58 -1.0
74,273 - GFF4360 0.58 -0.8
74,273 - GFF4360 0.58 -0.3
74,535 - GFF4360 0.83 -1.1
74,696 + -0.0
74,697 - -0.1
74,697 - +1.7
74,728 + +0.7
74,755 + +0.1
74,755 + -0.3
74,911 - +0.5
74,911 - -1.1
74,917 - -0.1
75,016 + +0.2
75,016 + +0.4
75,017 - +0.4
75,017 - -0.1
75,036 + -0.8
75,066 - -0.5
75,172 + -3.1
75,173 - +0.3
75,174 + -0.0
75,174 + -1.2
75,174 + +0.4
75,174 + -0.3
75,175 - -0.9
75,175 - +0.5
75,236 + GFF4361 0.13 -2.1
75,236 + GFF4361 0.13 -1.0
75,310 + GFF4361 0.19 -0.2
75,310 + GFF4361 0.19 +0.6
75,310 + GFF4361 0.19 +0.1
75,311 - GFF4361 0.19 +0.5
75,311 - GFF4361 0.19 -0.2
75,311 - GFF4361 0.19 -0.0
75,319 + GFF4361 0.20 +1.0
75,319 + GFF4361 0.20 -0.9
75,319 + GFF4361 0.20 +0.7
75,465 - GFF4361 0.32 -0.2
75,477 + GFF4361 0.33 +0.1
75,477 + GFF4361 0.33 -0.4
75,477 + GFF4361 0.33 -0.1
75,478 - GFF4361 0.33 +0.4
75,478 - GFF4361 0.33 -0.5
75,478 - GFF4361 0.33 +0.2
75,478 - GFF4361 0.33 -0.2
75,478 - GFF4361 0.33 -0.7
75,530 - GFF4361 0.37 +0.8
75,584 + GFF4361 0.41 -0.2
75,585 - GFF4361 0.41 -2.7
75,669 - GFF4361 0.48 +0.8
75,676 + GFF4361 0.49 +1.4
75,701 + GFF4361 0.51 -0.1
75,701 + GFF4361 0.51 +0.1
75,701 + GFF4361 0.51 +0.3
75,701 + GFF4361 0.51 -0.0
75,702 - GFF4361 0.51 -1.0
75,702 - GFF4361 0.51 +0.1

Or see this region's nucleotide sequence