Strain Fitness in Pseudomonas sp. DMC3 around GFF4359

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4357 and GFF4358 are separated by 65 nucleotidesGFF4358 and GFF4359 are separated by 43 nucleotidesGFF4359 and GFF4360 overlap by 4 nucleotides GFF4357 - Protein translocase subunit SecD, at 70,204 to 72,072 GFF4357 GFF4358 - Sec translocon accessory complex subunit YajC, at 72,138 to 72,476 GFF4358 GFF4359 - Queuine tRNA-ribosyltransferase, at 72,520 to 73,653 GFF4359 GFF4360 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 73,650 to 74,714 GFF4360 Position (kb) 72 73 74Strain fitness (log2 ratio) -2 -1 0 1at 72.140 kb on - strandat 72.140 kb on - strandat 72.459 kb on - strandat 72.479 kb on - strandat 72.479 kb on - strandat 72.479 kb on - strandat 72.479 kb on - strandat 72.585 kb on + strandat 72.586 kb on - strandat 72.586 kb on - strandat 72.586 kb on - strandat 72.586 kb on - strandat 72.629 kb on + strandat 72.642 kb on + strand, within GFF4359at 72.651 kb on + strand, within GFF4359at 72.651 kb on + strand, within GFF4359at 72.651 kb on + strand, within GFF4359at 72.651 kb on + strand, within GFF4359at 72.652 kb on - strand, within GFF4359at 72.728 kb on + strand, within GFF4359at 72.728 kb on + strand, within GFF4359at 72.728 kb on + strand, within GFF4359at 72.728 kb on + strand, within GFF4359at 72.728 kb on + strand, within GFF4359at 72.729 kb on - strand, within GFF4359at 72.729 kb on - strand, within GFF4359at 72.913 kb on - strand, within GFF4359at 72.917 kb on + strand, within GFF4359at 72.953 kb on + strand, within GFF4359at 72.954 kb on - strand, within GFF4359at 73.532 kb on + strand, within GFF4359at 73.532 kb on + strand, within GFF4359at 73.532 kb on + strand, within GFF4359at 73.532 kb on + strand, within GFF4359at 73.533 kb on - strand, within GFF4359at 73.533 kb on - strand, within GFF4359at 73.765 kb on + strand, within GFF4360at 73.765 kb on + strand, within GFF4360at 73.766 kb on - strand, within GFF4360at 73.883 kb on - strand, within GFF4360at 73.886 kb on + strand, within GFF4360at 73.886 kb on + strand, within GFF4360at 73.886 kb on + strand, within GFF4360at 73.887 kb on - strand, within GFF4360at 73.887 kb on - strand, within GFF4360at 73.887 kb on - strand, within GFF4360at 73.887 kb on - strand, within GFF4360at 74.221 kb on + strand, within GFF4360at 74.222 kb on - strand, within GFF4360at 74.268 kb on + strand, within GFF4360at 74.268 kb on + strand, within GFF4360at 74.268 kb on + strand, within GFF4360at 74.269 kb on - strand, within GFF4360at 74.269 kb on - strand, within GFF4360at 74.269 kb on - strand, within GFF4360at 74.269 kb on - strand, within GFF4360at 74.269 kb on - strand, within GFF4360at 74.269 kb on - strand, within GFF4360at 74.269 kb on - strand, within GFF4360at 74.269 kb on - strand, within GFF4360at 74.270 kb on + strand, within GFF4360at 74.270 kb on + strand, within GFF4360at 74.270 kb on + strand, within GFF4360at 74.270 kb on + strand, within GFF4360at 74.271 kb on - strand, within GFF4360at 74.271 kb on - strand, within GFF4360at 74.271 kb on - strand, within GFF4360at 74.271 kb on - strand, within GFF4360at 74.271 kb on - strand, within GFF4360at 74.271 kb on - strand, within GFF4360at 74.272 kb on + strand, within GFF4360at 74.272 kb on + strand, within GFF4360at 74.272 kb on + strand, within GFF4360at 74.272 kb on + strand, within GFF4360at 74.272 kb on + strand, within GFF4360at 74.272 kb on + strand, within GFF4360at 74.272 kb on + strand, within GFF4360at 74.273 kb on - strand, within GFF4360at 74.273 kb on - strand, within GFF4360at 74.273 kb on - strand, within GFF4360at 74.273 kb on - strand, within GFF4360at 74.273 kb on - strand, within GFF4360at 74.273 kb on - strand, within GFF4360at 74.273 kb on - strand, within GFF4360at 74.535 kb on - strand, within GFF4360

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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72,140 - +0.5
72,140 - -1.6
72,459 - -1.1
72,479 - -1.0
72,479 - -1.3
72,479 - -0.1
72,479 - +0.0
72,585 + +0.7
72,586 - +1.3
72,586 - +1.3
72,586 - -1.9
72,586 - -0.3
72,629 + -0.4
72,642 + GFF4359 0.11 -0.9
72,651 + GFF4359 0.12 +0.1
72,651 + GFF4359 0.12 -0.3
72,651 + GFF4359 0.12 -1.8
72,651 + GFF4359 0.12 -1.6
72,652 - GFF4359 0.12 -0.9
72,728 + GFF4359 0.18 -0.6
72,728 + GFF4359 0.18 +1.3
72,728 + GFF4359 0.18 -1.2
72,728 + GFF4359 0.18 -0.2
72,728 + GFF4359 0.18 -0.1
72,729 - GFF4359 0.18 -0.9
72,729 - GFF4359 0.18 -0.6
72,913 - GFF4359 0.35 +0.2
72,917 + GFF4359 0.35 +0.1
72,953 + GFF4359 0.38 -0.6
72,954 - GFF4359 0.38 +0.7
73,532 + GFF4359 0.89 -0.0
73,532 + GFF4359 0.89 -2.0
73,532 + GFF4359 0.89 -1.3
73,532 + GFF4359 0.89 -0.6
73,533 - GFF4359 0.89 +0.7
73,533 - GFF4359 0.89 +0.1
73,765 + GFF4360 0.11 -1.1
73,765 + GFF4360 0.11 +0.1
73,766 - GFF4360 0.11 -0.3
73,883 - GFF4360 0.22 -0.9
73,886 + GFF4360 0.22 -1.6
73,886 + GFF4360 0.22 -0.3
73,886 + GFF4360 0.22 -0.2
73,887 - GFF4360 0.22 -1.0
73,887 - GFF4360 0.22 +0.2
73,887 - GFF4360 0.22 +0.5
73,887 - GFF4360 0.22 +0.4
74,221 + GFF4360 0.54 +1.1
74,222 - GFF4360 0.54 -0.1
74,268 + GFF4360 0.58 -0.0
74,268 + GFF4360 0.58 -0.0
74,268 + GFF4360 0.58 -1.4
74,269 - GFF4360 0.58 +0.8
74,269 - GFF4360 0.58 +0.1
74,269 - GFF4360 0.58 -0.1
74,269 - GFF4360 0.58 -1.1
74,269 - GFF4360 0.58 -0.5
74,269 - GFF4360 0.58 -0.8
74,269 - GFF4360 0.58 -1.5
74,269 - GFF4360 0.58 -0.0
74,270 + GFF4360 0.58 -2.1
74,270 + GFF4360 0.58 -0.3
74,270 + GFF4360 0.58 -0.7
74,270 + GFF4360 0.58 -0.9
74,271 - GFF4360 0.58 -0.5
74,271 - GFF4360 0.58 -0.6
74,271 - GFF4360 0.58 +0.4
74,271 - GFF4360 0.58 -0.3
74,271 - GFF4360 0.58 -0.1
74,271 - GFF4360 0.58 -0.2
74,272 + GFF4360 0.58 -0.1
74,272 + GFF4360 0.58 -0.6
74,272 + GFF4360 0.58 -0.0
74,272 + GFF4360 0.58 -0.3
74,272 + GFF4360 0.58 +0.6
74,272 + GFF4360 0.58 +0.7
74,272 + GFF4360 0.58 -1.3
74,273 - GFF4360 0.58 +1.3
74,273 - GFF4360 0.58 -1.1
74,273 - GFF4360 0.58 -0.9
74,273 - GFF4360 0.58 -0.6
74,273 - GFF4360 0.58 -1.0
74,273 - GFF4360 0.58 -0.8
74,273 - GFF4360 0.58 -0.3
74,535 - GFF4360 0.83 -1.1

Or see this region's nucleotide sequence