Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4204 and GFF4205 are separated by 125 nucleotides GFF4205 and GFF4206 are separated by 2 nucleotides GFF4206 and GFF4207 overlap by 11 nucleotides GFF4207 and GFF4208 are separated by 313 nucleotides
GFF4204 - Dimethyl-sulfide monooxygenase, at 174,035 to 175,393
GFF4204
GFF4205 - D-methionine-binding lipoprotein MetQ, at 175,519 to 176,328
GFF4205
GFF4206 - Methionine import ATP-binding protein MetN, at 176,331 to 177,452
GFF4206
GFF4207 - D-methionine transport system permease protein MetI, at 177,442 to 178,086
GFF4207
GFF4208 - hypothetical protein, at 178,400 to 178,756
GFF4208
Position (kb) 176
177
178 Strain fitness (log2 ratio) -1
0
1
2 at 175.369 kb on + strand at 175.391 kb on + strand at 175.392 kb on - strand at 175.495 kb on + strand at 175.495 kb on + strand at 175.495 kb on + strand at 175.496 kb on - strand at 175.759 kb on + strand, within GFF4205 at 176.113 kb on + strand, within GFF4205 at 176.113 kb on + strand, within GFF4205 at 176.113 kb on + strand, within GFF4205 at 176.114 kb on - strand, within GFF4205 at 176.114 kb on - strand, within GFF4205 at 176.114 kb on - strand, within GFF4205 at 176.114 kb on - strand, within GFF4205 at 176.114 kb on - strand, within GFF4205 at 176.114 kb on - strand, within GFF4205 at 176.182 kb on + strand, within GFF4205 at 176.183 kb on - strand, within GFF4205 at 176.183 kb on - strand, within GFF4205 at 176.183 kb on - strand, within GFF4205 at 176.183 kb on - strand, within GFF4205 at 176.251 kb on + strand at 176.251 kb on + strand at 176.251 kb on + strand at 176.251 kb on + strand at 176.251 kb on + strand at 176.252 kb on - strand at 176.252 kb on - strand at 176.306 kb on - strand at 176.422 kb on + strand at 176.422 kb on + strand at 176.423 kb on - strand at 176.448 kb on + strand, within GFF4206 at 176.449 kb on - strand, within GFF4206 at 177.433 kb on + strand at 177.433 kb on + strand at 177.434 kb on - strand at 177.441 kb on + strand at 177.442 kb on - strand at 177.442 kb on - strand at 177.571 kb on + strand, within GFF4207 at 177.572 kb on - strand, within GFF4207 at 177.687 kb on + strand, within GFF4207 at 177.687 kb on + strand, within GFF4207 at 177.688 kb on - strand, within GFF4207 at 177.691 kb on + strand, within GFF4207 at 177.692 kb on - strand, within GFF4207 at 177.692 kb on - strand, within GFF4207 at 177.692 kb on - strand, within GFF4207 at 177.973 kb on + strand, within GFF4207 at 178.077 kb on + strand at 178.078 kb on - strand at 178.155 kb on - strand at 178.172 kb on + strand at 178.172 kb on + strand at 178.172 kb on + strand at 178.173 kb on - strand at 178.233 kb on + strand at 178.234 kb on - strand at 178.234 kb on - strand at 178.257 kb on + strand at 178.264 kb on + strand at 178.264 kb on + strand at 178.268 kb on + strand at 178.268 kb on + strand at 178.269 kb on - strand at 178.269 kb on - strand at 178.436 kb on - strand, within GFF4208 at 178.436 kb on - strand, within GFF4208 at 178.436 kb on - strand, within GFF4208
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 175,369 + +0.5 175,391 + +0.6 175,392 - +0.3 175,495 + -0.8 175,495 + +1.0 175,495 + -0.4 175,496 - -0.4 175,759 + GFF4205 0.30 -0.4 176,113 + GFF4205 0.73 -0.2 176,113 + GFF4205 0.73 +0.0 176,113 + GFF4205 0.73 +0.1 176,114 - GFF4205 0.73 -1.2 176,114 - GFF4205 0.73 -0.5 176,114 - GFF4205 0.73 +0.0 176,114 - GFF4205 0.73 +0.2 176,114 - GFF4205 0.73 -0.1 176,114 - GFF4205 0.73 -0.1 176,182 + GFF4205 0.82 -1.3 176,183 - GFF4205 0.82 -0.1 176,183 - GFF4205 0.82 -0.8 176,183 - GFF4205 0.82 -1.5 176,183 - GFF4205 0.82 +0.9 176,251 + -1.1 176,251 + +0.5 176,251 + -0.7 176,251 + +0.4 176,251 + -1.0 176,252 - +2.6 176,252 - +0.7 176,306 - -0.0 176,422 + +0.9 176,422 + -0.2 176,423 - +0.6 176,448 + GFF4206 0.10 -1.3 176,449 - GFF4206 0.11 -0.5 177,433 + -0.2 177,433 + +0.8 177,434 - -0.6 177,441 + -0.2 177,442 - -0.5 177,442 - -0.1 177,571 + GFF4207 0.20 -0.7 177,572 - GFF4207 0.20 +1.0 177,687 + GFF4207 0.38 -0.1 177,687 + GFF4207 0.38 -0.5 177,688 - GFF4207 0.38 +0.9 177,691 + GFF4207 0.39 -0.1 177,692 - GFF4207 0.39 -0.1 177,692 - GFF4207 0.39 -0.1 177,692 - GFF4207 0.39 -0.5 177,973 + GFF4207 0.82 -0.6 178,077 + +0.4 178,078 - -1.1 178,155 - +0.3 178,172 + -1.7 178,172 + -1.3 178,172 + -0.3 178,173 - -0.8 178,233 + +0.9 178,234 - +0.4 178,234 - -0.1 178,257 + +0.7 178,264 + +0.2 178,264 + -0.1 178,268 + +0.6 178,268 + -0.9 178,269 - -0.2 178,269 - -0.4 178,436 - GFF4208 0.10 +0.8 178,436 - GFF4208 0.10 -0.3 178,436 - GFF4208 0.10 -0.4
Or see this region's nucleotide sequence