Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4184 and GFF4185 overlap by 1 nucleotides GFF4185 and GFF4186 are separated by 269 nucleotides GFF4186 and GFF4187 are separated by 257 nucleotides
GFF4184 - Protein YhgF, at 148,253 to 150,577
GFF4184
GFF4185 - Acyl-coenzyme A thioesterase PaaI, at 150,577 to 150,960
GFF4185
GFF4186 - Glutamate--cysteine ligase, at 151,230 to 152,813
GFF4186
GFF4187 - Taurine-binding periplasmic protein, at 153,071 to 154,048
GFF4187
Position (kb) 151
152
153 Strain fitness (log2 ratio) -2
-1
0
1
2 at 150.747 kb on + strand, within GFF4185 at 150.747 kb on + strand, within GFF4185 at 150.748 kb on - strand, within GFF4185 at 150.817 kb on + strand, within GFF4185 at 150.817 kb on + strand, within GFF4185 at 150.817 kb on + strand, within GFF4185 at 150.817 kb on + strand, within GFF4185 at 150.818 kb on - strand, within GFF4185 at 150.958 kb on + strand at 150.959 kb on - strand at 150.959 kb on - strand at 150.983 kb on - strand at 150.983 kb on - strand at 151.050 kb on + strand at 151.051 kb on - strand at 151.051 kb on - strand at 151.135 kb on + strand at 151.175 kb on + strand at 151.175 kb on + strand at 151.175 kb on + strand at 151.175 kb on + strand at 151.176 kb on - strand at 151.176 kb on - strand at 151.176 kb on - strand at 151.176 kb on - strand at 151.197 kb on + strand at 151.527 kb on + strand, within GFF4186 at 151.527 kb on + strand, within GFF4186 at 151.588 kb on - strand, within GFF4186 at 151.588 kb on - strand, within GFF4186 at 151.620 kb on + strand, within GFF4186 at 151.620 kb on + strand, within GFF4186 at 151.620 kb on + strand, within GFF4186 at 151.620 kb on + strand, within GFF4186 at 151.620 kb on + strand, within GFF4186 at 151.621 kb on - strand, within GFF4186 at 151.686 kb on + strand, within GFF4186 at 151.824 kb on + strand, within GFF4186 at 151.911 kb on + strand, within GFF4186 at 151.911 kb on + strand, within GFF4186 at 151.911 kb on + strand, within GFF4186 at 151.912 kb on - strand, within GFF4186 at 151.912 kb on - strand, within GFF4186 at 151.921 kb on - strand, within GFF4186 at 152.007 kb on + strand, within GFF4186 at 152.130 kb on + strand, within GFF4186 at 152.160 kb on + strand, within GFF4186 at 152.208 kb on + strand, within GFF4186 at 152.298 kb on + strand, within GFF4186 at 152.298 kb on + strand, within GFF4186 at 152.578 kb on + strand, within GFF4186 at 152.782 kb on - strand at 152.811 kb on + strand at 152.811 kb on + strand at 152.811 kb on + strand at 152.811 kb on + strand at 152.812 kb on - strand at 152.962 kb on - strand at 153.111 kb on + strand at 153.111 kb on + strand at 153.170 kb on - strand, within GFF4187 at 153.602 kb on + strand, within GFF4187 at 153.602 kb on + strand, within GFF4187 at 153.602 kb on + strand, within GFF4187 at 153.602 kb on + strand, within GFF4187 at 153.602 kb on + strand, within GFF4187 at 153.602 kb on + strand, within GFF4187 at 153.602 kb on + strand, within GFF4187 at 153.602 kb on + strand, within GFF4187 at 153.603 kb on - strand, within GFF4187 at 153.603 kb on - strand, within GFF4187 at 153.688 kb on + strand, within GFF4187
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 150,747 + GFF4185 0.44 -0.7 150,747 + GFF4185 0.44 -0.8 150,748 - GFF4185 0.45 -0.2 150,817 + GFF4185 0.62 +0.4 150,817 + GFF4185 0.62 +0.1 150,817 + GFF4185 0.62 +0.5 150,817 + GFF4185 0.62 -2.1 150,818 - GFF4185 0.63 -0.9 150,958 + -1.1 150,959 - +0.2 150,959 - +0.3 150,983 - +0.2 150,983 - -0.7 151,050 + -1.0 151,051 - +0.2 151,051 - -0.0 151,135 + -1.4 151,175 + +0.6 151,175 + +0.6 151,175 + -0.4 151,175 + -0.5 151,176 - +0.2 151,176 - +1.9 151,176 - -1.3 151,176 - -0.4 151,197 + -0.7 151,527 + GFF4186 0.19 -1.0 151,527 + GFF4186 0.19 -0.2 151,588 - GFF4186 0.23 -0.5 151,588 - GFF4186 0.23 -0.2 151,620 + GFF4186 0.25 -1.2 151,620 + GFF4186 0.25 -0.5 151,620 + GFF4186 0.25 -1.2 151,620 + GFF4186 0.25 -1.0 151,620 + GFF4186 0.25 +0.8 151,621 - GFF4186 0.25 -0.2 151,686 + GFF4186 0.29 -1.0 151,824 + GFF4186 0.38 -1.2 151,911 + GFF4186 0.43 -0.5 151,911 + GFF4186 0.43 -1.0 151,911 + GFF4186 0.43 -0.0 151,912 - GFF4186 0.43 -0.2 151,912 - GFF4186 0.43 -0.5 151,921 - GFF4186 0.44 -0.5 152,007 + GFF4186 0.49 +0.6 152,130 + GFF4186 0.57 -1.0 152,160 + GFF4186 0.59 -0.2 152,208 + GFF4186 0.62 +0.5 152,298 + GFF4186 0.67 -1.5 152,298 + GFF4186 0.67 -1.2 152,578 + GFF4186 0.85 +0.6 152,782 - +0.3 152,811 + -0.7 152,811 + -1.0 152,811 + -1.4 152,811 + +0.7 152,812 - -0.3 152,962 - -0.5 153,111 + +0.8 153,111 + -0.3 153,170 - GFF4187 0.10 -1.5 153,602 + GFF4187 0.54 -1.4 153,602 + GFF4187 0.54 +0.4 153,602 + GFF4187 0.54 -1.0 153,602 + GFF4187 0.54 -0.5 153,602 + GFF4187 0.54 -0.4 153,602 + GFF4187 0.54 +0.5 153,602 + GFF4187 0.54 -0.1 153,602 + GFF4187 0.54 +0.9 153,603 - GFF4187 0.54 -1.2 153,603 - GFF4187 0.54 +0.4 153,688 + GFF4187 0.63 -0.7
Or see this region's nucleotide sequence