Strain Fitness in Pseudomonas sp. DMC3 around GFF4144

Experiment: D,L-Lactate and casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Lactate and casaminos (C)
106,931	+		GFF4142	0.42	-0.5
106,931	+		GFF4142	0.42	+0.4
106,931	+		GFF4142	0.42	-0.0
106,931	+		GFF4142	0.42	-0.5
106,932	-		GFF4142	0.42	-1.9
106,932	-		GFF4142	0.42	+0.6
106,932	-		GFF4142	0.42	-0.2
106,932	-		GFF4142	0.42	+0.3
106,932	-		GFF4142	0.42	+0.3
106,932	-		GFF4142	0.42	+0.5
106,932	-		GFF4142	0.42	-0.0
106,932	-		GFF4142	0.42	+0.0
106,932	-		GFF4142	0.42	+0.2
106,935	+		GFF4142	0.43	+0.2
106,935	+		GFF4142	0.43	+0.9
106,935	+		GFF4142	0.43	-0.1
106,935	+		GFF4142	0.43	+0.9
106,935	+		GFF4142	0.43	-0.2
106,935	+		GFF4142	0.43	+0.0
106,935	+		GFF4142	0.43	+1.4
106,935	+		GFF4142	0.43	+0.1
106,935	+		GFF4142	0.43	-2.0
106,935	+		GFF4142	0.43	-0.6
106,935	+		GFF4142	0.43	-0.4
106,935	+		GFF4142	0.43	-0.1
106,936	-		GFF4142	0.43	-0.5
106,936	-		GFF4142	0.43	-1.0
106,936	-		GFF4142	0.43	-2.1
106,936	-		GFF4142	0.43	+0.1
106,936	-		GFF4142	0.43	+0.7
106,936	-		GFF4142	0.43	-1.5
106,936	-		GFF4142	0.43	-0.4
106,936	-		GFF4142	0.43	-0.5
106,936	-		GFF4142	0.43	+0.3
106,936	-		GFF4142	0.43	+0.6
106,936	-		GFF4142	0.43	-0.2
107,039	+		GFF4142	0.58	+0.0
107,039	+		GFF4142	0.58	-1.0
107,039	+		GFF4142	0.58	-1.8
107,040	-		GFF4142	0.58	-2.0
107,143	+		GFF4142	0.73	+0.2
107,143	+		GFF4142	0.73	+0.7
107,144	-		GFF4142	0.73	+0.1
107,144	-		GFF4142	0.73	-2.1
107,204	+		GFF4142	0.82	+0.9
107,364	-		GFF4143	0.10	+0.5
107,389	+		GFF4143	0.16	-2.9
107,389	+		GFF4143	0.16	-0.2
107,389	+		GFF4143	0.16	-0.4
107,389	+		GFF4143	0.16	-0.5
107,390	-		GFF4143	0.17	+0.0
107,390	-		GFF4143	0.17	-1.1
107,390	-		GFF4143	0.17	-0.0
107,390	-		GFF4143	0.17	+0.1
107,390	-		GFF4143	0.17	-0.3
107,390	-		GFF4143	0.17	-0.3
107,449	+		GFF4143	0.31	+0.0
107,450	-		GFF4143	0.31	-0.7
107,509	+		GFF4143	0.46	+0.5
107,563	+		GFF4143	0.59	+0.5
107,564	-		GFF4143	0.59	-0.6
107,564	-		GFF4143	0.59	+0.0
107,564	-		GFF4143	0.59	-0.4
107,567	+		GFF4143	0.60	-0.4
107,567	+		GFF4143	0.60	+0.5
107,568	-		GFF4143	0.60	+0.9
107,569	+		GFF4143	0.61	-0.4
107,569	+		GFF4143	0.61	-0.2
107,570	-		GFF4143	0.61	-0.2
107,723	+				-2.3
107,723	+				-0.8
107,723	+				-1.7
107,723	+				-0.2
107,724	-				-0.2
107,724	-				-0.6
107,724	-				-0.8
107,724	-				-0.4
107,724	-				+0.4
107,724	-				-0.6
107,724	-				-1.5
107,729	+				-0.6
107,729	+				-0.5
107,730	-				+1.0
107,730	-				+0.2
107,730	-				+0.5
107,730	-				-1.2
107,730	-				-0.3
107,730	-				-0.8
107,753	+				+1.3
107,753	+				-0.0
107,754	-				-0.2
107,765	-				+0.4
107,771	+				-1.4
107,771	+				+0.1
107,843	+				-0.6
107,853	+				-1.1
107,854	-				-0.2
107,857	+				+0.4
107,857	+				+0.4
107,857	+				+0.1
107,858	-				+0.2
107,858	-				+0.8
107,858	-				-0.2
107,858	-				-0.1
107,858	-				-0.0
107,868	+				-0.5
107,894	+		GFF4144	0.13	-0.2
107,934	+		GFF4144	0.33	-0.9
108,009	+		GFF4144	0.70	-1.2
108,009	+		GFF4144	0.70	-0.5
108,070	+				-0.8
108,070	+				-0.8
108,070	+				+1.0
108,070	+				+0.2
108,070	+				+0.5
108,071	-				-0.6
108,071	-				-0.6
108,071	-				+0.6
108,071	-				-1.5
108,093	+				+1.0
108,093	+				-0.5
108,093	+				-0.2
108,139	+				+1.2
108,299	+		GFF4145	0.52	-1.5
108,338	+		GFF4145	0.66	+0.2
108,371	+		GFF4145	0.77	+0.2
108,371	+		GFF4145	0.77	+0.2
108,371	+		GFF4145	0.77	-1.0
108,416	+				-0.3
108,462	+				+0.9
108,527	+				+1.4
108,527	+				-0.2
108,527	+				+0.7
108,527	+				+0.2
108,528	-				+0.0
108,528	-				+0.3
108,528	-				+0.5
108,528	-				+0.4
108,528	-				+0.1
108,535	+				-0.2
108,535	+				+0.5
108,536	-				+0.2
108,539	+				-0.2
108,539	+				+0.2
108,539	+				+0.3
108,539	+				+1.0
108,539	+				-0.1
108,540	-				+0.6
108,540	-				+0.3
108,540	-				+1.5
108,540	-				+2.4
108,540	-				+0.3
108,542	+				+0.2
108,543	-				-0.9
108,543	-				+0.9
108,543	-				-0.5
108,595	+				-0.8
108,603	-				+0.2
108,626	+				+0.5
108,626	+				-0.5
108,626	+				+0.6
108,626	+				-0.8
108,626	+				+0.2
108,626	+				-0.0
108,626	+				+0.1
108,626	+				-0.3
108,627	-				-1.8
108,627	-				+0.2
108,627	-				+0.4
108,627	-				+0.5
108,627	-				+0.4
108,627	-				-0.5
108,627	-				+0.1
108,627	-				-0.2
108,627	-				-0.7
108,635	-				-0.4
108,663	+				-0.4
108,663	+				+0.2
108,663	+				+0.9
108,663	+				+0.2
108,663	+				+0.1
108,663	+				+0.5
108,663	+				-0.4
108,664	-				-1.6
108,664	-				-0.1
108,664	-				+0.4
108,664	-				-1.0
108,664	-				+0.6
108,664	-				-0.2
108,799	+				+0.1
108,799	+				-0.2
108,799	+				-0.5
108,799	+				-0.0
108,800	-				+0.2
108,814	+				-1.0
108,814	+				+0.5
108,814	+				+0.8
108,814	+				-0.1
108,814	+				-0.3
108,814	+				+1.0
108,814	+				+0.8
108,814	+				+0.1
108,814	+				-0.5
108,815	-				-0.8
108,815	-				-1.3
108,815	-				+0.1
108,815	-				-0.8
108,832	+				+0.8
108,832	+				+0.8
108,832	+				-0.0
108,832	+				-1.4
108,832	+				+0.3
108,833	-				-0.5
108,833	-				-1.1
108,833	-				+0.3
108,833	-				+0.1
108,833	-				+0.8
108,835	-				-0.4
108,835	-				+0.4
108,843	+				-0.7
108,844	-				-0.3
108,844	-				+0.0
108,867	+				+0.3
108,878	-				+0.8
108,901	+				-0.1
108,911	+				+0.5
108,911	+				-0.9
108,912	-				-0.5
108,912	-				-0.8