Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4125 and GFF4126 are separated by 24 nucleotides GFF4126 and GFF4127 are separated by 620 nucleotides
GFF4125 - hypothetical protein, at 85,029 to 87,455
GFF4125
GFF4126 - ATP-dependent zinc metalloprotease FtsH, at 87,480 to 88,466
GFF4126
GFF4127 - Putative transposon Tn552 DNA-invertase bin3, at 89,087 to 89,704
GFF4127
Position (kb) 87
88
89 Strain fitness (log2 ratio) -2
-1
0
1
2 at 86.491 kb on + strand, within GFF4125 at 86.491 kb on + strand, within GFF4125 at 86.492 kb on - strand, within GFF4125 at 86.492 kb on - strand, within GFF4125 at 86.492 kb on - strand, within GFF4125 at 86.515 kb on + strand, within GFF4125 at 86.516 kb on - strand, within GFF4125 at 86.516 kb on - strand, within GFF4125 at 86.550 kb on + strand, within GFF4125 at 86.550 kb on + strand, within GFF4125 at 86.550 kb on + strand, within GFF4125 at 86.550 kb on + strand, within GFF4125 at 86.550 kb on + strand, within GFF4125 at 86.550 kb on + strand, within GFF4125 at 86.550 kb on + strand, within GFF4125 at 86.550 kb on + strand, within GFF4125 at 86.550 kb on + strand, within GFF4125 at 86.551 kb on - strand, within GFF4125 at 86.551 kb on - strand, within GFF4125 at 86.551 kb on - strand, within GFF4125 at 86.551 kb on - strand, within GFF4125 at 86.551 kb on - strand, within GFF4125 at 86.583 kb on + strand, within GFF4125 at 86.583 kb on + strand, within GFF4125 at 86.583 kb on + strand, within GFF4125 at 86.583 kb on + strand, within GFF4125 at 86.584 kb on - strand, within GFF4125 at 86.584 kb on - strand, within GFF4125 at 86.584 kb on - strand, within GFF4125 at 86.584 kb on - strand, within GFF4125 at 86.787 kb on + strand, within GFF4125 at 86.787 kb on + strand, within GFF4125 at 86.787 kb on + strand, within GFF4125 at 86.787 kb on + strand, within GFF4125 at 86.788 kb on - strand, within GFF4125 at 86.788 kb on - strand, within GFF4125 at 86.788 kb on - strand, within GFF4125 at 86.788 kb on - strand, within GFF4125 at 86.811 kb on + strand, within GFF4125 at 86.811 kb on + strand, within GFF4125 at 86.811 kb on + strand, within GFF4125 at 86.811 kb on + strand, within GFF4125 at 86.811 kb on + strand, within GFF4125 at 86.812 kb on - strand, within GFF4125 at 86.851 kb on + strand, within GFF4125 at 86.852 kb on - strand, within GFF4125 at 86.852 kb on - strand, within GFF4125 at 86.990 kb on + strand, within GFF4125 at 86.996 kb on + strand, within GFF4125 at 86.996 kb on + strand, within GFF4125 at 86.996 kb on + strand, within GFF4125 at 86.997 kb on - strand, within GFF4125 at 86.997 kb on - strand, within GFF4125 at 86.997 kb on - strand, within GFF4125 at 86.997 kb on - strand, within GFF4125 at 86.997 kb on - strand, within GFF4125 at 87.018 kb on - strand, within GFF4125 at 87.094 kb on + strand, within GFF4125 at 87.095 kb on - strand, within GFF4125 at 87.239 kb on + strand at 87.239 kb on + strand at 87.239 kb on + strand at 87.240 kb on - strand at 87.240 kb on - strand at 87.240 kb on - strand at 87.240 kb on - strand at 87.240 kb on - strand at 87.240 kb on - strand at 87.240 kb on - strand at 87.254 kb on - strand at 87.254 kb on - strand at 87.254 kb on - strand at 87.254 kb on - strand at 87.331 kb on + strand at 87.445 kb on + strand at 87.445 kb on + strand at 87.446 kb on - strand at 87.446 kb on - strand at 87.446 kb on - strand at 87.446 kb on - strand at 87.446 kb on - strand at 87.446 kb on - strand at 87.449 kb on + strand at 87.450 kb on - strand at 87.450 kb on - strand at 87.450 kb on - strand at 87.481 kb on + strand at 87.481 kb on + strand at 87.482 kb on - strand at 87.579 kb on + strand, within GFF4126 at 87.614 kb on + strand, within GFF4126 at 87.627 kb on + strand, within GFF4126 at 87.627 kb on + strand, within GFF4126 at 87.627 kb on + strand, within GFF4126 at 87.627 kb on + strand, within GFF4126 at 87.808 kb on + strand, within GFF4126 at 88.114 kb on + strand, within GFF4126 at 88.122 kb on + strand, within GFF4126 at 88.122 kb on + strand, within GFF4126 at 88.122 kb on + strand, within GFF4126 at 88.122 kb on + strand, within GFF4126 at 88.122 kb on + strand, within GFF4126 at 88.267 kb on + strand, within GFF4126 at 88.267 kb on + strand, within GFF4126 at 88.299 kb on + strand, within GFF4126 at 88.484 kb on + strand at 88.484 kb on + strand at 88.485 kb on - strand at 88.519 kb on - strand at 88.519 kb on - strand at 88.523 kb on + strand at 88.524 kb on - strand at 88.524 kb on - strand at 88.533 kb on - strand at 88.592 kb on - strand at 88.606 kb on + strand at 88.606 kb on + strand at 88.607 kb on - strand at 88.607 kb on - strand at 88.618 kb on + strand at 88.619 kb on - strand at 88.624 kb on + strand at 88.650 kb on - strand at 88.654 kb on + strand at 88.654 kb on + strand at 88.655 kb on - strand at 88.655 kb on - strand at 88.655 kb on - strand at 88.655 kb on - strand at 88.675 kb on + strand at 88.676 kb on - strand at 88.758 kb on - strand at 88.837 kb on + strand at 88.837 kb on + strand at 88.838 kb on - strand at 88.838 kb on - strand at 88.856 kb on + strand at 88.861 kb on + strand at 88.879 kb on + strand at 88.879 kb on + strand at 88.879 kb on + strand at 88.880 kb on - strand at 88.880 kb on - strand at 88.880 kb on - strand at 88.880 kb on - strand at 88.880 kb on - strand at 88.883 kb on + strand at 88.884 kb on - strand at 88.884 kb on - strand at 88.892 kb on - strand at 89.003 kb on - strand at 89.045 kb on + strand at 89.045 kb on + strand at 89.046 kb on - strand at 89.046 kb on - strand at 89.055 kb on + strand at 89.055 kb on + strand at 89.077 kb on - strand at 89.215 kb on + strand, within GFF4127 at 89.216 kb on - strand, within GFF4127 at 89.229 kb on + strand, within GFF4127 at 89.229 kb on + strand, within GFF4127 at 89.229 kb on + strand, within GFF4127 at 89.230 kb on - strand, within GFF4127 at 89.230 kb on - strand, within GFF4127 at 89.289 kb on + strand, within GFF4127 at 89.289 kb on + strand, within GFF4127
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 86,491 + GFF4125 0.60 -0.2 86,491 + GFF4125 0.60 -0.2 86,492 - GFF4125 0.60 -0.8 86,492 - GFF4125 0.60 -0.4 86,492 - GFF4125 0.60 -0.2 86,515 + GFF4125 0.61 -0.1 86,516 - GFF4125 0.61 -2.1 86,516 - GFF4125 0.61 -0.0 86,550 + GFF4125 0.63 +0.2 86,550 + GFF4125 0.63 -0.4 86,550 + GFF4125 0.63 -1.1 86,550 + GFF4125 0.63 +0.5 86,550 + GFF4125 0.63 -0.5 86,550 + GFF4125 0.63 +0.1 86,550 + GFF4125 0.63 -0.3 86,550 + GFF4125 0.63 +0.5 86,550 + GFF4125 0.63 -0.5 86,551 - GFF4125 0.63 +0.6 86,551 - GFF4125 0.63 +0.4 86,551 - GFF4125 0.63 +0.8 86,551 - GFF4125 0.63 +0.6 86,551 - GFF4125 0.63 -0.0 86,583 + GFF4125 0.64 +0.4 86,583 + GFF4125 0.64 -0.6 86,583 + GFF4125 0.64 -0.8 86,583 + GFF4125 0.64 -0.4 86,584 - GFF4125 0.64 -0.6 86,584 - GFF4125 0.64 -1.2 86,584 - GFF4125 0.64 -0.1 86,584 - GFF4125 0.64 +0.4 86,787 + GFF4125 0.72 +0.3 86,787 + GFF4125 0.72 +0.1 86,787 + GFF4125 0.72 -0.6 86,787 + GFF4125 0.72 -1.9 86,788 - GFF4125 0.72 -0.0 86,788 - GFF4125 0.72 +1.8 86,788 - GFF4125 0.72 -0.8 86,788 - GFF4125 0.72 +0.4 86,811 + GFF4125 0.73 -0.3 86,811 + GFF4125 0.73 +0.2 86,811 + GFF4125 0.73 -0.2 86,811 + GFF4125 0.73 -0.4 86,811 + GFF4125 0.73 +0.2 86,812 - GFF4125 0.73 -0.6 86,851 + GFF4125 0.75 -0.4 86,852 - GFF4125 0.75 -0.1 86,852 - GFF4125 0.75 -0.5 86,990 + GFF4125 0.81 +0.6 86,996 + GFF4125 0.81 -0.2 86,996 + GFF4125 0.81 -0.8 86,996 + GFF4125 0.81 +0.5 86,997 - GFF4125 0.81 +0.6 86,997 - GFF4125 0.81 -1.3 86,997 - GFF4125 0.81 -0.1 86,997 - GFF4125 0.81 -0.8 86,997 - GFF4125 0.81 -0.7 87,018 - GFF4125 0.82 -1.7 87,094 + GFF4125 0.85 +0.2 87,095 - GFF4125 0.85 -0.5 87,239 + +0.7 87,239 + -0.9 87,239 + -0.9 87,240 - +0.0 87,240 - -1.0 87,240 - -0.2 87,240 - +0.5 87,240 - +0.1 87,240 - -0.5 87,240 - -0.1 87,254 - +0.6 87,254 - -0.5 87,254 - -0.4 87,254 - +0.4 87,331 + +0.1 87,445 + -0.2 87,445 + -0.5 87,446 - -1.5 87,446 - +0.2 87,446 - +0.9 87,446 - -0.8 87,446 - -0.7 87,446 - -0.7 87,449 + -0.7 87,450 - -0.1 87,450 - +0.2 87,450 - -0.5 87,481 + -0.7 87,481 + +0.2 87,482 - -0.1 87,579 + GFF4126 0.10 +0.0 87,614 + GFF4126 0.14 -0.5 87,627 + GFF4126 0.15 -0.7 87,627 + GFF4126 0.15 +0.1 87,627 + GFF4126 0.15 -0.4 87,627 + GFF4126 0.15 -0.1 87,808 + GFF4126 0.33 -0.7 88,114 + GFF4126 0.64 -0.2 88,122 + GFF4126 0.65 -2.0 88,122 + GFF4126 0.65 -0.8 88,122 + GFF4126 0.65 -1.5 88,122 + GFF4126 0.65 +1.0 88,122 + GFF4126 0.65 -1.0 88,267 + GFF4126 0.80 -0.8 88,267 + GFF4126 0.80 -0.3 88,299 + GFF4126 0.83 -0.1 88,484 + -0.1 88,484 + -0.5 88,485 - +0.2 88,519 - +0.0 88,519 - -0.5 88,523 + -0.1 88,524 - +1.0 88,524 - +1.6 88,533 - +0.5 88,592 - +1.0 88,606 + +0.2 88,606 + -0.2 88,607 - -0.2 88,607 - -1.5 88,618 + +0.8 88,619 - -1.0 88,624 + -0.4 88,650 - -1.6 88,654 + -0.2 88,654 + +1.0 88,655 - -0.3 88,655 - +0.3 88,655 - -0.2 88,655 - +0.0 88,675 + -0.8 88,676 - -0.3 88,758 - -0.7 88,837 + +0.5 88,837 + -0.5 88,838 - -0.5 88,838 - -0.2 88,856 + +0.9 88,861 + +0.4 88,879 + -0.8 88,879 + -0.1 88,879 + +0.1 88,880 - +0.4 88,880 - +0.8 88,880 - -0.2 88,880 - -0.2 88,880 - -0.1 88,883 + -0.7 88,884 - +1.1 88,884 - -0.4 88,892 - -0.3 89,003 - +0.0 89,045 + +0.2 89,045 + -0.6 89,046 - +0.8 89,046 - +0.2 89,055 + +0.2 89,055 + +0.6 89,077 - +0.6 89,215 + GFF4127 0.21 +0.5 89,216 - GFF4127 0.21 -2.5 89,229 + GFF4127 0.23 -0.5 89,229 + GFF4127 0.23 +0.3 89,229 + GFF4127 0.23 +0.7 89,230 - GFF4127 0.23 -0.5 89,230 - GFF4127 0.23 -1.3 89,289 + GFF4127 0.33 +0.1 89,289 + GFF4127 0.33 -0.0
Or see this region's nucleotide sequence