Strain Fitness in Pseudomonas sp. DMC3 around GFF4103

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4102 and GFF4103 overlap by 4 nucleotidesGFF4103 and GFF4104 are separated by 570 nucleotides GFF4102 - Adenine DNA glycosylase, at 58,967 to 60,034 GFF4102 GFF4103 - putative Fe(2+)-trafficking protein, at 60,031 to 60,303 GFF4103 GFF4104 - N-(2-amino-2-carboxyethyl)-L-glutamate synthase, at 60,874 to 61,848 GFF4104 Position (kb) 60 61Strain fitness (log2 ratio) -2 -1 0 1at 59.117 kb on + strand, within GFF4102at 59.117 kb on + strand, within GFF4102at 59.117 kb on + strand, within GFF4102at 59.117 kb on + strand, within GFF4102at 59.118 kb on - strand, within GFF4102at 59.118 kb on - strand, within GFF4102at 59.210 kb on + strand, within GFF4102at 59.210 kb on + strand, within GFF4102at 59.210 kb on + strand, within GFF4102at 59.211 kb on - strand, within GFF4102at 59.213 kb on + strand, within GFF4102at 59.213 kb on + strand, within GFF4102at 59.213 kb on + strand, within GFF4102at 59.214 kb on - strand, within GFF4102at 59.214 kb on - strand, within GFF4102at 59.214 kb on - strand, within GFF4102at 59.264 kb on + strand, within GFF4102at 59.265 kb on - strand, within GFF4102at 59.265 kb on - strand, within GFF4102at 59.504 kb on + strand, within GFF4102at 59.505 kb on - strand, within GFF4102at 59.505 kb on - strand, within GFF4102at 59.936 kb on + strandat 59.936 kb on + strandat 59.936 kb on + strandat 59.936 kb on + strandat 59.937 kb on - strandat 59.937 kb on - strandat 59.937 kb on - strandat 59.937 kb on - strandat 59.937 kb on - strandat 59.937 kb on - strandat 60.044 kb on + strandat 60.045 kb on - strandat 60.058 kb on + strandat 60.247 kb on + strand, within GFF4103at 60.248 kb on - strand, within GFF4103at 60.248 kb on - strand, within GFF4103at 60.266 kb on - strand, within GFF4103at 60.266 kb on - strand, within GFF4103at 60.283 kb on + strandat 60.284 kb on - strandat 60.330 kb on + strandat 60.330 kb on + strandat 60.330 kb on + strandat 60.510 kb on + strandat 60.551 kb on + strandat 60.551 kb on + strandat 60.551 kb on + strandat 60.552 kb on - strandat 60.552 kb on - strandat 60.593 kb on + strandat 60.623 kb on + strandat 60.624 kb on - strandat 60.660 kb on + strandat 60.660 kb on + strandat 60.661 kb on - strandat 60.800 kb on + strandat 60.801 kb on - strandat 60.873 kb on + strandat 60.873 kb on + strandat 60.873 kb on + strandat 60.873 kb on + strandat 60.874 kb on - strandat 60.904 kb on + strandat 60.904 kb on + strandat 60.904 kb on + strandat 60.905 kb on - strandat 60.905 kb on - strandat 60.905 kb on - strandat 60.905 kb on - strandat 61.111 kb on + strand, within GFF4104at 61.140 kb on + strand, within GFF4104at 61.141 kb on - strand, within GFF4104at 61.276 kb on + strand, within GFF4104at 61.276 kb on + strand, within GFF4104at 61.276 kb on + strand, within GFF4104at 61.276 kb on + strand, within GFF4104at 61.276 kb on + strand, within GFF4104at 61.276 kb on + strand, within GFF4104at 61.277 kb on - strand, within GFF4104at 61.277 kb on - strand, within GFF4104at 61.295 kb on - strand, within GFF4104

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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59,117 + GFF4102 0.14 -0.7
59,117 + GFF4102 0.14 -0.2
59,117 + GFF4102 0.14 +0.1
59,117 + GFF4102 0.14 -0.3
59,118 - GFF4102 0.14 +0.2
59,118 - GFF4102 0.14 -0.6
59,210 + GFF4102 0.23 -0.2
59,210 + GFF4102 0.23 -0.3
59,210 + GFF4102 0.23 +0.9
59,211 - GFF4102 0.23 +0.3
59,213 + GFF4102 0.23 +0.0
59,213 + GFF4102 0.23 -0.2
59,213 + GFF4102 0.23 -0.5
59,214 - GFF4102 0.23 -1.6
59,214 - GFF4102 0.23 -1.5
59,214 - GFF4102 0.23 +0.1
59,264 + GFF4102 0.28 +0.4
59,265 - GFF4102 0.28 -2.0
59,265 - GFF4102 0.28 +0.1
59,504 + GFF4102 0.50 +0.1
59,505 - GFF4102 0.50 +0.2
59,505 - GFF4102 0.50 -0.2
59,936 + -0.1
59,936 + -0.5
59,936 + +0.7
59,936 + -0.3
59,937 - -0.1
59,937 - +0.8
59,937 - -0.5
59,937 - -1.0
59,937 - -1.0
59,937 - -1.0
60,044 + +1.2
60,045 - +0.0
60,058 + -1.9
60,247 + GFF4103 0.79 -1.2
60,248 - GFF4103 0.79 -0.2
60,248 - GFF4103 0.79 -0.5
60,266 - GFF4103 0.86 -0.5
60,266 - GFF4103 0.86 -2.4
60,283 + +0.2
60,284 - -0.5
60,330 + +0.7
60,330 + +0.1
60,330 + -0.6
60,510 + -1.2
60,551 + +0.1
60,551 + -1.0
60,551 + +0.5
60,552 - -0.1
60,552 - -0.8
60,593 + -0.3
60,623 + +1.3
60,624 - -0.8
60,660 + -0.9
60,660 + -0.2
60,661 - -0.0
60,800 + -0.3
60,801 - -0.1
60,873 + +0.2
60,873 + -0.4
60,873 + -0.4
60,873 + -0.8
60,874 - -0.9
60,904 + -0.8
60,904 + +0.3
60,904 + +0.6
60,905 - -0.9
60,905 - +0.6
60,905 - -0.2
60,905 - -0.1
61,111 + GFF4104 0.24 +0.5
61,140 + GFF4104 0.27 -0.7
61,141 - GFF4104 0.27 -0.3
61,276 + GFF4104 0.41 -0.2
61,276 + GFF4104 0.41 -0.0
61,276 + GFF4104 0.41 -0.5
61,276 + GFF4104 0.41 -0.2
61,276 + GFF4104 0.41 +1.4
61,276 + GFF4104 0.41 +0.4
61,277 - GFF4104 0.41 -0.5
61,277 - GFF4104 0.41 -0.7
61,295 - GFF4104 0.43 +0.5

Or see this region's nucleotide sequence