Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4090 and GFF4091 are separated by 31 nucleotides GFF4091 and GFF4092 are separated by 2 nucleotides GFF4092 and GFF4093 are separated by 117 nucleotides
GFF4090 - Murein hydrolase activator EnvC, at 45,461 to 46,747
GFF4090
GFF4091 - Carboxy-terminal processing protease CtpB, at 46,779 to 48,098
GFF4091
GFF4092 - putative protein, at 48,101 to 48,877
GFF4092
GFF4093 - hypothetical protein, at 48,995 to 50,371
GFF4093
Position (kb) 46
47
48
49 Strain fitness (log2 ratio) -2
-1
0
1
2 at 45.800 kb on + strand, within GFF4090 at 45.821 kb on + strand, within GFF4090 at 45.822 kb on - strand, within GFF4090 at 45.822 kb on - strand, within GFF4090 at 45.879 kb on - strand, within GFF4090 at 45.881 kb on + strand, within GFF4090 at 45.882 kb on - strand, within GFF4090 at 45.882 kb on - strand, within GFF4090 at 45.887 kb on + strand, within GFF4090 at 45.887 kb on + strand, within GFF4090 at 45.888 kb on - strand, within GFF4090 at 46.138 kb on + strand, within GFF4090 at 46.139 kb on - strand, within GFF4090 at 46.139 kb on - strand, within GFF4090 at 46.139 kb on - strand, within GFF4090 at 46.147 kb on + strand, within GFF4090 at 46.148 kb on - strand, within GFF4090 at 46.392 kb on + strand, within GFF4090 at 46.392 kb on + strand, within GFF4090 at 46.392 kb on + strand, within GFF4090 at 46.669 kb on + strand at 46.682 kb on + strand at 46.682 kb on + strand at 46.682 kb on + strand at 46.683 kb on - strand at 46.745 kb on + strand at 46.758 kb on + strand at 46.758 kb on + strand at 46.758 kb on + strand at 46.758 kb on + strand at 46.759 kb on - strand at 46.800 kb on - strand at 46.968 kb on + strand, within GFF4091 at 46.969 kb on - strand, within GFF4091 at 47.049 kb on + strand, within GFF4091 at 47.050 kb on - strand, within GFF4091 at 47.050 kb on - strand, within GFF4091 at 47.050 kb on - strand, within GFF4091 at 47.398 kb on - strand, within GFF4091 at 47.403 kb on + strand, within GFF4091 at 47.403 kb on + strand, within GFF4091 at 47.403 kb on + strand, within GFF4091 at 47.404 kb on - strand, within GFF4091 at 47.589 kb on + strand, within GFF4091 at 47.836 kb on - strand, within GFF4091 at 47.931 kb on + strand, within GFF4091 at 47.932 kb on - strand, within GFF4091 at 47.932 kb on - strand, within GFF4091 at 48.188 kb on + strand, within GFF4092 at 48.188 kb on + strand, within GFF4092 at 48.188 kb on + strand, within GFF4092 at 48.189 kb on - strand, within GFF4092 at 48.189 kb on - strand, within GFF4092 at 48.876 kb on - strand at 48.898 kb on + strand at 48.898 kb on + strand at 48.898 kb on + strand at 48.898 kb on + strand at 48.898 kb on + strand at 48.898 kb on + strand at 48.898 kb on + strand at 48.898 kb on + strand at 48.898 kb on + strand at 48.898 kb on + strand at 48.898 kb on + strand at 48.898 kb on + strand at 48.899 kb on - strand at 48.899 kb on - strand at 48.899 kb on - strand at 48.899 kb on - strand at 48.899 kb on - strand at 48.899 kb on - strand at 48.899 kb on - strand at 48.899 kb on - strand at 48.899 kb on - strand at 48.899 kb on - strand at 48.899 kb on - strand at 48.899 kb on - strand at 48.899 kb on - strand at 48.899 kb on - strand at 48.899 kb on - strand at 48.899 kb on - strand at 48.899 kb on - strand at 48.899 kb on - strand at 48.899 kb on - strand at 48.899 kb on - strand at 48.899 kb on - strand at 48.899 kb on - strand at 48.899 kb on - strand at 48.899 kb on - strand at 48.899 kb on - strand at 48.902 kb on + strand at 48.902 kb on + strand at 48.902 kb on + strand at 48.902 kb on + strand at 48.902 kb on + strand at 48.902 kb on + strand at 48.902 kb on + strand at 48.902 kb on + strand at 48.902 kb on + strand at 48.902 kb on + strand at 48.902 kb on + strand at 48.902 kb on + strand at 48.902 kb on + strand at 48.902 kb on + strand at 48.902 kb on + strand at 48.902 kb on + strand at 48.902 kb on + strand at 48.902 kb on + strand at 48.902 kb on + strand at 48.902 kb on + strand at 48.902 kb on + strand at 48.902 kb on + strand at 48.902 kb on + strand at 48.902 kb on + strand at 48.902 kb on + strand at 48.902 kb on + strand at 48.902 kb on + strand at 48.902 kb on + strand at 48.902 kb on + strand at 48.902 kb on + strand at 48.903 kb on - strand at 48.903 kb on - strand at 48.903 kb on - strand at 48.903 kb on - strand at 48.903 kb on - strand at 48.903 kb on - strand at 48.903 kb on - strand at 48.903 kb on - strand at 48.903 kb on - strand at 48.903 kb on - strand at 48.903 kb on - strand at 48.903 kb on - strand at 48.903 kb on - strand at 48.903 kb on - strand at 48.903 kb on - strand at 48.903 kb on - strand at 48.903 kb on - strand at 48.903 kb on - strand at 48.906 kb on + strand at 48.906 kb on + strand at 48.907 kb on - strand at 49.000 kb on + strand at 49.012 kb on + strand at 49.013 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 45,800 + GFF4090 0.26 +0.2 45,821 + GFF4090 0.28 -0.8 45,822 - GFF4090 0.28 +0.6 45,822 - GFF4090 0.28 +0.2 45,879 - GFF4090 0.32 -1.5 45,881 + GFF4090 0.33 +0.1 45,882 - GFF4090 0.33 +0.7 45,882 - GFF4090 0.33 +0.8 45,887 + GFF4090 0.33 -0.5 45,887 + GFF4090 0.33 +0.5 45,888 - GFF4090 0.33 -0.4 46,138 + GFF4090 0.53 -1.0 46,139 - GFF4090 0.53 -0.0 46,139 - GFF4090 0.53 -0.4 46,139 - GFF4090 0.53 +0.8 46,147 + GFF4090 0.53 +0.2 46,148 - GFF4090 0.53 -1.0 46,392 + GFF4090 0.72 +0.1 46,392 + GFF4090 0.72 -0.3 46,392 + GFF4090 0.72 -0.1 46,669 + +0.5 46,682 + -0.8 46,682 + +0.1 46,682 + -0.2 46,683 - -0.9 46,745 + +0.4 46,758 + -0.2 46,758 + +0.9 46,758 + +0.6 46,758 + -0.2 46,759 - -0.5 46,800 - +0.8 46,968 + GFF4091 0.14 +0.5 46,969 - GFF4091 0.14 -1.2 47,049 + GFF4091 0.20 +0.2 47,050 - GFF4091 0.21 -1.2 47,050 - GFF4091 0.21 -0.5 47,050 - GFF4091 0.21 -1.1 47,398 - GFF4091 0.47 +1.6 47,403 + GFF4091 0.47 -1.6 47,403 + GFF4091 0.47 -0.2 47,403 + GFF4091 0.47 -0.8 47,404 - GFF4091 0.47 +0.5 47,589 + GFF4091 0.61 -1.5 47,836 - GFF4091 0.80 -1.7 47,931 + GFF4091 0.87 -0.4 47,932 - GFF4091 0.87 -1.0 47,932 - GFF4091 0.87 -0.5 48,188 + GFF4092 0.11 -0.7 48,188 + GFF4092 0.11 +0.6 48,188 + GFF4092 0.11 +0.2 48,189 - GFF4092 0.11 -0.3 48,189 - GFF4092 0.11 -1.0 48,876 - +0.2 48,898 + +1.0 48,898 + +0.0 48,898 + -0.2 48,898 + +0.7 48,898 + -0.4 48,898 + -0.1 48,898 + +0.0 48,898 + +0.2 48,898 + +0.1 48,898 + -0.3 48,898 + +1.1 48,898 + -0.7 48,899 - -0.5 48,899 - +1.0 48,899 - -1.4 48,899 - +0.2 48,899 - -0.5 48,899 - -0.3 48,899 - -0.2 48,899 - +0.3 48,899 - -0.1 48,899 - -0.5 48,899 - +0.2 48,899 - +0.2 48,899 - -0.9 48,899 - +1.0 48,899 - -0.7 48,899 - +0.5 48,899 - -0.4 48,899 - +0.7 48,899 - +0.7 48,899 - -0.4 48,899 - -0.4 48,899 - +1.1 48,899 - +0.2 48,899 - -1.9 48,899 - -0.3 48,902 + +0.5 48,902 + -0.0 48,902 + -0.8 48,902 + -0.0 48,902 + -0.1 48,902 + +0.8 48,902 + -1.2 48,902 + -0.6 48,902 + +0.2 48,902 + -0.4 48,902 + -0.6 48,902 + -0.5 48,902 + -0.0 48,902 + +1.4 48,902 + +0.4 48,902 + -0.2 48,902 + -1.4 48,902 + -0.4 48,902 + -0.1 48,902 + +0.0 48,902 + +0.2 48,902 + +0.4 48,902 + -0.4 48,902 + -0.0 48,902 + +0.2 48,902 + +0.2 48,902 + +0.6 48,902 + +0.6 48,902 + +1.0 48,902 + -0.8 48,903 - +2.1 48,903 - -1.6 48,903 - -1.1 48,903 - -0.4 48,903 - -0.2 48,903 - +0.1 48,903 - +1.1 48,903 - -0.2 48,903 - +0.1 48,903 - +0.6 48,903 - +0.7 48,903 - -0.4 48,903 - +0.9 48,903 - -0.2 48,903 - +0.7 48,903 - -1.2 48,903 - -2.6 48,903 - +1.8 48,906 + -1.2 48,906 + -0.4 48,907 - -0.3 49,000 + -0.8 49,012 + -0.1 49,013 - -1.8
Or see this region's nucleotide sequence