Strain Fitness in Pseudomonas sp. DMC3 around GFF407

Experiment: D,L-Lactate and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF406 and GFF407 are separated by 17 nucleotidesGFF407 and GFF408 are separated by 208 nucleotidesGFF408 and GFF409 are separated by 18 nucleotides GFF406 - Phosphomannomutase/phosphoglucomutase, at 449,179 to 450,576 GFF406 GFF407 - Acetylglutamate kinase, at 450,594 to 451,499 GFF407 GFF408 - hypothetical protein, at 451,708 to 451,938 GFF408 GFF409 - hypothetical protein, at 451,957 to 452,529 GFF409 Position (kb) 450 451 452Strain fitness (log2 ratio) -2 -1 0 1at 449.660 kb on - strand, within GFF406at 449.952 kb on + strand, within GFF406at 449.996 kb on + strand, within GFF406at 449.996 kb on + strand, within GFF406at 450.036 kb on + strand, within GFF406at 450.074 kb on - strand, within GFF406at 450.074 kb on - strand, within GFF406at 450.090 kb on - strand, within GFF406at 450.214 kb on + strand, within GFF406at 450.214 kb on + strand, within GFF406at 450.214 kb on + strand, within GFF406at 450.295 kb on - strand, within GFF406at 450.316 kb on - strand, within GFF406at 450.421 kb on + strand, within GFF406at 450.566 kb on + strandat 450.566 kb on + strandat 450.566 kb on + strandat 450.566 kb on + strandat 450.566 kb on + strandat 450.566 kb on + strandat 450.567 kb on - strandat 450.654 kb on + strandat 450.654 kb on + strandat 450.654 kb on + strandat 450.654 kb on + strandat 450.654 kb on + strandat 450.654 kb on + strandat 450.655 kb on - strandat 450.666 kb on + strandat 450.666 kb on + strandat 450.667 kb on - strandat 450.693 kb on + strand, within GFF407at 451.173 kb on + strand, within GFF407at 451.173 kb on + strand, within GFF407at 451.173 kb on + strand, within GFF407at 451.173 kb on + strand, within GFF407at 451.173 kb on + strand, within GFF407at 451.174 kb on - strand, within GFF407at 451.174 kb on - strand, within GFF407at 451.339 kb on - strand, within GFF407at 451.346 kb on + strand, within GFF407at 451.346 kb on + strand, within GFF407at 451.394 kb on - strand, within GFF407at 451.394 kb on - strand, within GFF407at 451.397 kb on + strand, within GFF407at 451.397 kb on + strand, within GFF407at 451.398 kb on - strand, within GFF407at 451.504 kb on + strandat 451.508 kb on - strandat 451.508 kb on - strandat 451.508 kb on - strandat 451.508 kb on - strandat 451.544 kb on + strandat 451.578 kb on + strandat 451.578 kb on + strandat 451.578 kb on + strandat 451.664 kb on + strandat 451.664 kb on + strandat 451.664 kb on + strandat 451.674 kb on + strandat 451.674 kb on + strandat 451.675 kb on - strandat 451.675 kb on - strandat 451.720 kb on + strandat 451.720 kb on + strandat 451.720 kb on + strandat 451.720 kb on + strandat 451.721 kb on - strandat 451.721 kb on - strandat 451.721 kb on - strandat 451.756 kb on + strand, within GFF408at 451.757 kb on - strand, within GFF408at 451.757 kb on - strand, within GFF408at 451.757 kb on - strand, within GFF408at 451.757 kb on - strand, within GFF408at 451.783 kb on + strand, within GFF408at 451.937 kb on - strandat 452.092 kb on + strand, within GFF409at 452.161 kb on + strand, within GFF409at 452.161 kb on + strand, within GFF409at 452.162 kb on - strand, within GFF409at 452.177 kb on - strand, within GFF409at 452.177 kb on - strand, within GFF409

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
remove
449,660 - GFF406 0.34 +0.0
449,952 + GFF406 0.55 -0.0
449,996 + GFF406 0.58 -0.6
449,996 + GFF406 0.58 +0.8
450,036 + GFF406 0.61 -0.3
450,074 - GFF406 0.64 -0.1
450,074 - GFF406 0.64 +0.2
450,090 - GFF406 0.65 +0.2
450,214 + GFF406 0.74 -0.0
450,214 + GFF406 0.74 -0.1
450,214 + GFF406 0.74 +0.1
450,295 - GFF406 0.80 -0.7
450,316 - GFF406 0.81 +0.7
450,421 + GFF406 0.89 +0.5
450,566 + +0.2
450,566 + +0.8
450,566 + +0.7
450,566 + -0.9
450,566 + +0.5
450,566 + -0.5
450,567 - -0.7
450,654 + -0.4
450,654 + -0.7
450,654 + -0.2
450,654 + +0.4
450,654 + +0.5
450,654 + +0.2
450,655 - -1.5
450,666 + -0.9
450,666 + -0.3
450,667 - -1.0
450,693 + GFF407 0.11 -0.5
451,173 + GFF407 0.64 -0.9
451,173 + GFF407 0.64 -0.7
451,173 + GFF407 0.64 +1.4
451,173 + GFF407 0.64 -1.2
451,173 + GFF407 0.64 -2.5
451,174 - GFF407 0.64 -2.1
451,174 - GFF407 0.64 -0.9
451,339 - GFF407 0.82 -0.1
451,346 + GFF407 0.83 -2.4
451,346 + GFF407 0.83 -0.5
451,394 - GFF407 0.88 -2.0
451,394 - GFF407 0.88 -2.6
451,397 + GFF407 0.89 +0.4
451,397 + GFF407 0.89 -2.0
451,398 - GFF407 0.89 +0.2
451,504 + -0.3
451,508 - -0.4
451,508 - +0.4
451,508 - -0.7
451,508 - +0.1
451,544 + +0.5
451,578 + -0.2
451,578 + +0.2
451,578 + -0.5
451,664 + -0.7
451,664 + -2.4
451,664 + +0.0
451,674 + +1.4
451,674 + -0.1
451,675 - -0.8
451,675 - +0.1
451,720 + -0.5
451,720 + -0.2
451,720 + +1.0
451,720 + -0.3
451,721 - -0.4
451,721 - +0.8
451,721 - -1.0
451,756 + GFF408 0.21 +0.7
451,757 - GFF408 0.21 -0.2
451,757 - GFF408 0.21 +0.6
451,757 - GFF408 0.21 -1.2
451,757 - GFF408 0.21 -0.0
451,783 + GFF408 0.32 +0.4
451,937 - -0.2
452,092 + GFF409 0.24 +1.2
452,161 + GFF409 0.36 +0.4
452,161 + GFF409 0.36 +0.4
452,162 - GFF409 0.36 -1.1
452,177 - GFF409 0.38 +0.3
452,177 - GFF409 0.38 -0.1

Or see this region's nucleotide sequence