Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4030 and GFF4031 are separated by 22 nucleotides GFF4031 and GFF4032 overlap by 17 nucleotides GFF4032 and GFF4033 are separated by 77 nucleotides
GFF4030 - Transcriptional regulatory protein ZraR, at 294,562 to 295,998
GFF4030
GFF4031 - Adaptive-response sensory-kinase SasA, at 296,021 to 298,975
GFF4031
GFF4032 - hypothetical protein, at 298,959 to 299,135
GFF4032
GFF4033 - Glutamyl-Q tRNA(Asp) synthetase, at 299,213 to 300,106
GFF4033
Position (kb) 296
297
298
299 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 295.082 kb on + strand, within GFF4030 at 295.082 kb on + strand, within GFF4030 at 295.082 kb on + strand, within GFF4030 at 295.083 kb on - strand, within GFF4030 at 295.083 kb on - strand, within GFF4030 at 295.083 kb on - strand, within GFF4030 at 295.183 kb on + strand, within GFF4030 at 295.184 kb on - strand, within GFF4030 at 295.523 kb on + strand, within GFF4030 at 295.523 kb on + strand, within GFF4030 at 295.523 kb on + strand, within GFF4030 at 295.523 kb on + strand, within GFF4030 at 295.524 kb on - strand, within GFF4030 at 295.623 kb on + strand, within GFF4030 at 295.715 kb on + strand, within GFF4030 at 295.715 kb on + strand, within GFF4030 at 295.715 kb on + strand, within GFF4030 at 295.715 kb on + strand, within GFF4030 at 295.715 kb on + strand, within GFF4030 at 295.716 kb on - strand, within GFF4030 at 295.716 kb on - strand, within GFF4030 at 295.716 kb on - strand, within GFF4030 at 295.866 kb on + strand at 295.867 kb on - strand at 295.867 kb on - strand at 295.922 kb on + strand at 296.093 kb on + strand at 296.093 kb on + strand at 296.093 kb on + strand at 296.093 kb on + strand at 296.094 kb on - strand at 296.094 kb on - strand at 296.094 kb on - strand at 296.128 kb on - strand at 296.148 kb on + strand at 296.149 kb on - strand at 296.149 kb on - strand at 296.149 kb on - strand at 296.415 kb on + strand, within GFF4031 at 296.415 kb on + strand, within GFF4031 at 296.415 kb on + strand, within GFF4031 at 296.415 kb on + strand, within GFF4031 at 296.415 kb on + strand, within GFF4031 at 296.416 kb on - strand, within GFF4031 at 296.416 kb on - strand, within GFF4031 at 296.705 kb on + strand, within GFF4031 at 296.706 kb on - strand, within GFF4031 at 296.706 kb on - strand, within GFF4031 at 296.777 kb on + strand, within GFF4031 at 296.777 kb on + strand, within GFF4031 at 296.903 kb on - strand, within GFF4031 at 297.174 kb on + strand, within GFF4031 at 297.175 kb on - strand, within GFF4031 at 297.175 kb on - strand, within GFF4031 at 297.175 kb on - strand, within GFF4031 at 297.193 kb on + strand, within GFF4031 at 297.195 kb on + strand, within GFF4031 at 297.196 kb on - strand, within GFF4031 at 297.196 kb on - strand, within GFF4031 at 297.196 kb on - strand, within GFF4031 at 297.217 kb on + strand, within GFF4031 at 297.217 kb on + strand, within GFF4031 at 297.318 kb on + strand, within GFF4031 at 297.318 kb on + strand, within GFF4031 at 297.318 kb on + strand, within GFF4031 at 297.318 kb on + strand, within GFF4031 at 297.318 kb on + strand, within GFF4031 at 297.318 kb on + strand, within GFF4031 at 297.318 kb on + strand, within GFF4031 at 297.318 kb on + strand, within GFF4031 at 297.319 kb on - strand, within GFF4031 at 297.319 kb on - strand, within GFF4031 at 297.319 kb on - strand, within GFF4031 at 297.319 kb on - strand, within GFF4031 at 297.319 kb on - strand, within GFF4031 at 297.319 kb on - strand, within GFF4031 at 297.582 kb on + strand, within GFF4031 at 297.582 kb on + strand, within GFF4031 at 297.582 kb on + strand, within GFF4031 at 297.582 kb on + strand, within GFF4031 at 297.582 kb on + strand, within GFF4031 at 297.583 kb on - strand, within GFF4031 at 297.606 kb on + strand, within GFF4031 at 297.606 kb on + strand, within GFF4031 at 297.606 kb on + strand, within GFF4031 at 297.606 kb on + strand, within GFF4031 at 297.606 kb on + strand, within GFF4031 at 297.606 kb on + strand, within GFF4031 at 297.606 kb on + strand, within GFF4031 at 297.606 kb on + strand, within GFF4031 at 297.606 kb on + strand, within GFF4031 at 297.606 kb on + strand, within GFF4031 at 297.606 kb on + strand, within GFF4031 at 297.606 kb on + strand, within GFF4031 at 297.606 kb on + strand, within GFF4031 at 297.606 kb on + strand, within GFF4031 at 297.606 kb on + strand, within GFF4031 at 297.606 kb on + strand, within GFF4031 at 297.606 kb on + strand, within GFF4031 at 297.606 kb on + strand, within GFF4031 at 297.606 kb on + strand, within GFF4031 at 297.606 kb on + strand, within GFF4031 at 297.607 kb on - strand, within GFF4031 at 297.607 kb on - strand, within GFF4031 at 297.607 kb on - strand, within GFF4031 at 297.607 kb on - strand, within GFF4031 at 297.607 kb on - strand, within GFF4031 at 297.607 kb on - strand, within GFF4031 at 297.607 kb on - strand, within GFF4031 at 297.607 kb on - strand, within GFF4031 at 297.607 kb on - strand, within GFF4031 at 297.607 kb on - strand, within GFF4031 at 297.607 kb on - strand, within GFF4031 at 297.607 kb on - strand, within GFF4031 at 297.607 kb on - strand, within GFF4031 at 297.607 kb on - strand, within GFF4031 at 297.607 kb on - strand, within GFF4031 at 297.607 kb on - strand, within GFF4031 at 297.714 kb on + strand, within GFF4031 at 297.714 kb on + strand, within GFF4031 at 297.714 kb on + strand, within GFF4031 at 297.810 kb on + strand, within GFF4031 at 297.810 kb on + strand, within GFF4031 at 297.811 kb on - strand, within GFF4031 at 297.876 kb on + strand, within GFF4031 at 297.877 kb on - strand, within GFF4031 at 297.877 kb on - strand, within GFF4031 at 297.877 kb on - strand, within GFF4031 at 297.880 kb on + strand, within GFF4031 at 297.880 kb on + strand, within GFF4031 at 297.881 kb on - strand, within GFF4031 at 297.881 kb on - strand, within GFF4031 at 297.881 kb on - strand, within GFF4031 at 297.996 kb on + strand, within GFF4031 at 297.996 kb on + strand, within GFF4031 at 297.997 kb on - strand, within GFF4031 at 298.053 kb on + strand, within GFF4031 at 298.054 kb on - strand, within GFF4031 at 298.200 kb on + strand, within GFF4031 at 298.200 kb on + strand, within GFF4031 at 298.200 kb on + strand, within GFF4031 at 298.200 kb on + strand, within GFF4031 at 298.200 kb on + strand, within GFF4031 at 298.200 kb on + strand, within GFF4031 at 298.200 kb on + strand, within GFF4031 at 298.200 kb on + strand, within GFF4031 at 298.200 kb on + strand, within GFF4031 at 298.200 kb on + strand, within GFF4031 at 298.200 kb on + strand, within GFF4031 at 298.200 kb on + strand, within GFF4031 at 298.200 kb on + strand, within GFF4031 at 298.201 kb on - strand, within GFF4031 at 298.201 kb on - strand, within GFF4031 at 298.201 kb on - strand, within GFF4031 at 298.201 kb on - strand, within GFF4031 at 298.201 kb on - strand, within GFF4031 at 298.201 kb on - strand, within GFF4031 at 298.201 kb on - strand, within GFF4031 at 298.350 kb on + strand, within GFF4031 at 298.351 kb on - strand, within GFF4031 at 298.360 kb on - strand, within GFF4031 at 298.680 kb on + strand at 298.680 kb on + strand at 298.680 kb on + strand at 298.681 kb on - strand at 298.681 kb on - strand at 298.681 kb on - strand at 298.752 kb on + strand at 298.777 kb on - strand at 298.782 kb on + strand at 298.783 kb on - strand at 298.783 kb on - strand at 298.804 kb on - strand at 298.824 kb on + strand at 298.845 kb on + strand at 298.845 kb on + strand at 298.845 kb on + strand at 298.845 kb on + strand at 298.845 kb on + strand at 298.845 kb on + strand at 298.845 kb on + strand at 298.845 kb on + strand at 298.845 kb on + strand at 298.846 kb on - strand at 298.846 kb on - strand at 298.846 kb on - strand at 298.846 kb on - strand at 298.846 kb on - strand at 298.961 kb on - strand at 299.029 kb on + strand, within GFF4032 at 299.029 kb on + strand, within GFF4032 at 299.030 kb on - strand, within GFF4032 at 299.092 kb on + strand, within GFF4032 at 299.092 kb on + strand, within GFF4032 at 299.093 kb on - strand, within GFF4032 at 299.093 kb on - strand, within GFF4032 at 299.093 kb on - strand, within GFF4032 at 299.093 kb on - strand, within GFF4032 at 299.125 kb on + strand at 299.125 kb on + strand at 299.125 kb on + strand at 299.126 kb on - strand at 299.126 kb on - strand at 299.126 kb on - strand at 299.126 kb on - strand at 299.131 kb on + strand at 299.131 kb on + strand at 299.131 kb on + strand at 299.131 kb on + strand at 299.131 kb on + strand at 299.131 kb on + strand at 299.131 kb on + strand at 299.131 kb on + strand at 299.131 kb on + strand at 299.131 kb on + strand at 299.131 kb on + strand at 299.131 kb on + strand at 299.131 kb on + strand at 299.131 kb on + strand at 299.131 kb on + strand at 299.131 kb on + strand at 299.131 kb on + strand at 299.132 kb on - strand at 299.132 kb on - strand at 299.132 kb on - strand at 299.132 kb on - strand at 299.132 kb on - strand at 299.132 kb on - strand at 299.132 kb on - strand at 299.132 kb on - strand at 299.132 kb on - strand at 299.132 kb on - strand at 299.132 kb on - strand at 299.132 kb on - strand at 299.132 kb on - strand at 299.132 kb on - strand at 299.132 kb on - strand at 299.132 kb on - strand at 299.132 kb on - strand at 299.132 kb on - strand at 299.132 kb on - strand at 299.132 kb on - strand at 299.132 kb on - strand at 299.132 kb on - strand at 299.132 kb on - strand at 299.132 kb on - strand at 299.132 kb on - strand at 299.132 kb on - strand at 299.132 kb on - strand at 299.458 kb on - strand, within GFF4033 at 299.494 kb on - strand, within GFF4033 at 299.494 kb on - strand, within GFF4033 at 299.571 kb on - strand, within GFF4033 at 299.586 kb on + strand, within GFF4033 at 299.586 kb on + strand, within GFF4033 at 299.592 kb on + strand, within GFF4033 at 299.592 kb on + strand, within GFF4033 at 299.592 kb on + strand, within GFF4033 at 299.593 kb on - strand, within GFF4033 at 299.593 kb on - strand, within GFF4033 at 299.593 kb on - strand, within GFF4033 at 299.627 kb on + strand, within GFF4033 at 299.627 kb on + strand, within GFF4033 at 299.628 kb on - strand, within GFF4033 at 299.682 kb on + strand, within GFF4033 at 299.682 kb on + strand, within GFF4033 at 299.683 kb on - strand, within GFF4033 at 299.757 kb on + strand, within GFF4033 at 299.758 kb on - strand, within GFF4033 at 299.770 kb on - strand, within GFF4033 at 299.805 kb on + strand, within GFF4033 at 299.806 kb on - strand, within GFF4033 at 299.806 kb on - strand, within GFF4033 at 299.847 kb on + strand, within GFF4033 at 299.848 kb on - strand, within GFF4033 at 299.901 kb on + strand, within GFF4033 at 299.902 kb on - strand, within GFF4033 at 299.902 kb on - strand, within GFF4033
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 295,082 + GFF4030 0.36 -1.1 295,082 + GFF4030 0.36 +1.3 295,082 + GFF4030 0.36 -1.1 295,083 - GFF4030 0.36 -0.3 295,083 - GFF4030 0.36 -0.0 295,083 - GFF4030 0.36 -0.8 295,183 + GFF4030 0.43 -0.1 295,184 - GFF4030 0.43 -2.4 295,523 + GFF4030 0.67 +0.1 295,523 + GFF4030 0.67 -0.3 295,523 + GFF4030 0.67 +0.4 295,523 + GFF4030 0.67 -0.3 295,524 - GFF4030 0.67 -1.3 295,623 + GFF4030 0.74 -1.2 295,715 + GFF4030 0.80 -0.1 295,715 + GFF4030 0.80 -1.3 295,715 + GFF4030 0.80 +0.1 295,715 + GFF4030 0.80 -1.6 295,715 + GFF4030 0.80 -2.2 295,716 - GFF4030 0.80 -0.8 295,716 - GFF4030 0.80 -0.5 295,716 - GFF4030 0.80 -0.0 295,866 + -1.3 295,867 - -2.3 295,867 - -2.1 295,922 + -1.9 296,093 + -1.1 296,093 + -1.6 296,093 + -2.1 296,093 + +0.7 296,094 - +0.1 296,094 - +1.7 296,094 - -0.4 296,128 - -0.8 296,148 + -1.3 296,149 - +0.9 296,149 - +0.8 296,149 - -0.2 296,415 + GFF4031 0.13 +2.0 296,415 + GFF4031 0.13 -0.6 296,415 + GFF4031 0.13 -1.1 296,415 + GFF4031 0.13 +0.6 296,415 + GFF4031 0.13 +0.7 296,416 - GFF4031 0.13 -0.2 296,416 - GFF4031 0.13 -0.2 296,705 + GFF4031 0.23 -2.4 296,706 - GFF4031 0.23 -0.3 296,706 - GFF4031 0.23 -1.2 296,777 + GFF4031 0.26 -0.5 296,777 + GFF4031 0.26 -2.1 296,903 - GFF4031 0.30 -2.2 297,174 + GFF4031 0.39 -0.3 297,175 - GFF4031 0.39 -0.3 297,175 - GFF4031 0.39 -0.9 297,175 - GFF4031 0.39 -0.7 297,193 + GFF4031 0.40 -1.5 297,195 + GFF4031 0.40 -2.1 297,196 - GFF4031 0.40 +0.9 297,196 - GFF4031 0.40 -0.6 297,196 - GFF4031 0.40 -0.3 297,217 + GFF4031 0.40 -1.3 297,217 + GFF4031 0.40 +0.4 297,318 + GFF4031 0.44 -0.9 297,318 + GFF4031 0.44 -0.3 297,318 + GFF4031 0.44 +0.4 297,318 + GFF4031 0.44 -0.6 297,318 + GFF4031 0.44 -0.3 297,318 + GFF4031 0.44 -0.1 297,318 + GFF4031 0.44 +0.5 297,318 + GFF4031 0.44 -0.3 297,319 - GFF4031 0.44 -1.2 297,319 - GFF4031 0.44 -0.6 297,319 - GFF4031 0.44 -1.8 297,319 - GFF4031 0.44 -0.5 297,319 - GFF4031 0.44 -3.6 297,319 - GFF4031 0.44 -0.8 297,582 + GFF4031 0.53 -1.6 297,582 + GFF4031 0.53 -0.0 297,582 + GFF4031 0.53 +0.1 297,582 + GFF4031 0.53 -0.6 297,582 + GFF4031 0.53 -0.3 297,583 - GFF4031 0.53 -1.6 297,606 + GFF4031 0.54 -1.3 297,606 + GFF4031 0.54 -0.8 297,606 + GFF4031 0.54 -0.3 297,606 + GFF4031 0.54 -0.9 297,606 + GFF4031 0.54 -1.8 297,606 + GFF4031 0.54 +0.7 297,606 + GFF4031 0.54 -0.5 297,606 + GFF4031 0.54 +0.1 297,606 + GFF4031 0.54 +0.7 297,606 + GFF4031 0.54 -1.2 297,606 + GFF4031 0.54 -2.0 297,606 + GFF4031 0.54 -0.5 297,606 + GFF4031 0.54 -1.6 297,606 + GFF4031 0.54 -1.6 297,606 + GFF4031 0.54 -1.0 297,606 + GFF4031 0.54 -0.9 297,606 + GFF4031 0.54 -0.8 297,606 + GFF4031 0.54 -0.3 297,606 + GFF4031 0.54 -0.6 297,606 + GFF4031 0.54 +0.7 297,607 - GFF4031 0.54 +0.8 297,607 - GFF4031 0.54 +0.1 297,607 - GFF4031 0.54 -0.5 297,607 - GFF4031 0.54 +0.5 297,607 - GFF4031 0.54 -1.3 297,607 - GFF4031 0.54 +0.1 297,607 - GFF4031 0.54 +0.9 297,607 - GFF4031 0.54 +0.5 297,607 - GFF4031 0.54 +0.2 297,607 - GFF4031 0.54 -0.0 297,607 - GFF4031 0.54 +0.4 297,607 - GFF4031 0.54 -0.9 297,607 - GFF4031 0.54 -0.0 297,607 - GFF4031 0.54 -0.2 297,607 - GFF4031 0.54 -0.7 297,607 - GFF4031 0.54 -1.5 297,714 + GFF4031 0.57 -0.3 297,714 + GFF4031 0.57 -1.0 297,714 + GFF4031 0.57 -0.0 297,810 + GFF4031 0.61 -2.2 297,810 + GFF4031 0.61 -0.1 297,811 - GFF4031 0.61 -0.6 297,876 + GFF4031 0.63 -1.1 297,877 - GFF4031 0.63 +0.5 297,877 - GFF4031 0.63 -0.9 297,877 - GFF4031 0.63 -1.1 297,880 + GFF4031 0.63 -0.7 297,880 + GFF4031 0.63 -0.9 297,881 - GFF4031 0.63 -1.6 297,881 - GFF4031 0.63 -1.7 297,881 - GFF4031 0.63 -1.2 297,996 + GFF4031 0.67 -1.5 297,996 + GFF4031 0.67 -1.5 297,997 - GFF4031 0.67 +0.7 298,053 + GFF4031 0.69 -2.0 298,054 - GFF4031 0.69 +0.8 298,200 + GFF4031 0.74 -1.9 298,200 + GFF4031 0.74 -2.6 298,200 + GFF4031 0.74 -0.2 298,200 + GFF4031 0.74 +0.4 298,200 + GFF4031 0.74 +1.3 298,200 + GFF4031 0.74 -1.5 298,200 + GFF4031 0.74 +0.4 298,200 + GFF4031 0.74 -0.6 298,200 + GFF4031 0.74 -1.2 298,200 + GFF4031 0.74 +0.7 298,200 + GFF4031 0.74 +0.1 298,200 + GFF4031 0.74 -0.6 298,200 + GFF4031 0.74 -0.9 298,201 - GFF4031 0.74 -0.5 298,201 - GFF4031 0.74 -1.0 298,201 - GFF4031 0.74 +0.1 298,201 - GFF4031 0.74 +0.1 298,201 - GFF4031 0.74 -0.5 298,201 - GFF4031 0.74 -0.0 298,201 - GFF4031 0.74 -0.2 298,350 + GFF4031 0.79 -1.2 298,351 - GFF4031 0.79 -2.3 298,360 - GFF4031 0.79 -0.8 298,680 + +0.7 298,680 + +0.8 298,680 + -1.1 298,681 - -0.5 298,681 - +1.0 298,681 - -0.3 298,752 + +0.1 298,777 - -0.0 298,782 + -1.6 298,783 - -0.1 298,783 - -0.7 298,804 - +0.5 298,824 + -0.2 298,845 + +1.0 298,845 + -0.6 298,845 + -1.2 298,845 + -2.1 298,845 + -1.5 298,845 + +0.1 298,845 + +0.7 298,845 + -0.0 298,845 + -0.3 298,846 - -1.5 298,846 - -0.9 298,846 - -0.9 298,846 - -1.5 298,846 - -0.4 298,961 - -0.2 299,029 + GFF4032 0.40 -0.3 299,029 + GFF4032 0.40 -0.0 299,030 - GFF4032 0.40 -0.8 299,092 + GFF4032 0.75 +0.3 299,092 + GFF4032 0.75 -0.4 299,093 - GFF4032 0.76 +1.4 299,093 - GFF4032 0.76 +0.4 299,093 - GFF4032 0.76 +0.5 299,093 - GFF4032 0.76 +1.3 299,125 + +0.3 299,125 + -1.0 299,125 + -0.2 299,126 - +0.7 299,126 - +0.1 299,126 - +0.7 299,126 - +0.9 299,131 + -0.6 299,131 + -1.1 299,131 + -0.7 299,131 + +0.4 299,131 + -0.1 299,131 + -0.2 299,131 + +0.3 299,131 + +0.4 299,131 + -0.2 299,131 + -1.2 299,131 + +0.2 299,131 + -0.8 299,131 + +1.6 299,131 + +0.6 299,131 + -0.1 299,131 + +0.5 299,131 + +0.1 299,132 - -0.6 299,132 - +0.2 299,132 - -0.6 299,132 - +0.9 299,132 - +0.6 299,132 - -0.2 299,132 - +0.0 299,132 - -0.1 299,132 - +0.1 299,132 - +1.6 299,132 - -0.1 299,132 - -0.5 299,132 - -0.9 299,132 - -0.3 299,132 - -0.1 299,132 - +1.0 299,132 - -0.1 299,132 - +0.7 299,132 - +1.2 299,132 - +0.7 299,132 - +0.7 299,132 - -0.9 299,132 - +0.5 299,132 - -0.4 299,132 - -0.2 299,132 - -1.2 299,132 - +0.7 299,458 - GFF4033 0.27 -0.7 299,494 - GFF4033 0.31 -0.9 299,494 - GFF4033 0.31 -0.8 299,571 - GFF4033 0.40 -0.8 299,586 + GFF4033 0.42 +0.3 299,586 + GFF4033 0.42 +0.2 299,592 + GFF4033 0.42 +2.0 299,592 + GFF4033 0.42 -1.9 299,592 + GFF4033 0.42 -0.6 299,593 - GFF4033 0.43 -0.5 299,593 - GFF4033 0.43 -0.4 299,593 - GFF4033 0.43 -0.9 299,627 + GFF4033 0.46 -1.3 299,627 + GFF4033 0.46 -1.2 299,628 - GFF4033 0.46 -0.9 299,682 + GFF4033 0.52 -0.8 299,682 + GFF4033 0.52 +0.8 299,683 - GFF4033 0.53 +0.1 299,757 + GFF4033 0.61 -0.8 299,758 - GFF4033 0.61 +0.2 299,770 - GFF4033 0.62 -0.6 299,805 + GFF4033 0.66 -0.4 299,806 - GFF4033 0.66 -0.6 299,806 - GFF4033 0.66 -0.2 299,847 + GFF4033 0.71 -1.0 299,848 - GFF4033 0.71 -0.4 299,901 + GFF4033 0.77 -1.1 299,902 - GFF4033 0.77 -1.1 299,902 - GFF4033 0.77 -0.4
Or see this region's nucleotide sequence