Strain Fitness in Pseudomonas sp. DMC3 around GFF4025

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4024 and GFF4025 are separated by 201 nucleotidesGFF4025 and GFF4026 are separated by 358 nucleotides GFF4024 - Acetyl-coenzyme A synthetase, at 285,684 to 287,621 GFF4024 GFF4025 - Glucose-6-phosphate isomerase, at 287,823 to 289,487 GFF4025 GFF4026 - Pantothenate synthetase, at 289,846 to 290,706 GFF4026 Position (kb) 287 288 289 290Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 286.843 kb on + strand, within GFF4024at 286.843 kb on + strand, within GFF4024at 286.844 kb on - strand, within GFF4024at 286.844 kb on - strand, within GFF4024at 287.142 kb on + strand, within GFF4024at 287.143 kb on - strand, within GFF4024at 287.185 kb on + strand, within GFF4024at 287.186 kb on - strand, within GFF4024at 287.212 kb on + strand, within GFF4024at 287.212 kb on + strand, within GFF4024at 287.212 kb on + strand, within GFF4024at 287.212 kb on + strand, within GFF4024at 287.212 kb on + strand, within GFF4024at 287.212 kb on + strand, within GFF4024at 287.212 kb on + strand, within GFF4024at 287.212 kb on + strand, within GFF4024at 287.213 kb on - strand, within GFF4024at 287.213 kb on - strand, within GFF4024at 287.213 kb on - strand, within GFF4024at 287.213 kb on - strand, within GFF4024at 287.213 kb on - strand, within GFF4024at 287.213 kb on - strand, within GFF4024at 287.296 kb on + strand, within GFF4024at 287.297 kb on - strand, within GFF4024at 287.297 kb on - strand, within GFF4024at 287.297 kb on - strand, within GFF4024at 287.389 kb on + strand, within GFF4024at 287.389 kb on + strand, within GFF4024at 287.390 kb on - strand, within GFF4024at 287.390 kb on - strand, within GFF4024at 287.539 kb on + strandat 287.552 kb on - strandat 287.632 kb on + strandat 287.633 kb on - strandat 287.654 kb on + strandat 287.654 kb on + strandat 287.654 kb on + strandat 287.654 kb on + strandat 287.821 kb on + strandat 287.849 kb on - strandat 287.849 kb on - strandat 288.010 kb on + strand, within GFF4025at 288.010 kb on + strand, within GFF4025at 288.010 kb on + strand, within GFF4025at 288.010 kb on + strand, within GFF4025at 288.010 kb on + strand, within GFF4025at 288.011 kb on - strand, within GFF4025at 288.011 kb on - strand, within GFF4025at 288.011 kb on - strand, within GFF4025at 288.011 kb on - strand, within GFF4025at 288.011 kb on - strand, within GFF4025at 288.011 kb on - strand, within GFF4025at 288.214 kb on + strand, within GFF4025at 288.214 kb on + strand, within GFF4025at 288.215 kb on - strand, within GFF4025at 288.314 kb on - strand, within GFF4025at 288.314 kb on - strand, within GFF4025at 288.455 kb on - strand, within GFF4025at 288.463 kb on + strand, within GFF4025at 288.584 kb on - strand, within GFF4025at 288.584 kb on - strand, within GFF4025at 288.766 kb on + strand, within GFF4025at 288.799 kb on + strand, within GFF4025at 288.799 kb on + strand, within GFF4025at 288.800 kb on - strand, within GFF4025at 288.937 kb on + strand, within GFF4025at 288.937 kb on + strand, within GFF4025at 288.938 kb on - strand, within GFF4025at 288.938 kb on - strand, within GFF4025at 288.948 kb on + strand, within GFF4025at 288.948 kb on + strand, within GFF4025at 288.948 kb on + strand, within GFF4025at 288.949 kb on - strand, within GFF4025at 288.949 kb on - strand, within GFF4025at 288.949 kb on - strand, within GFF4025at 288.949 kb on - strand, within GFF4025at 288.949 kb on - strand, within GFF4025at 288.964 kb on + strand, within GFF4025at 289.055 kb on - strand, within GFF4025at 289.477 kb on + strandat 289.481 kb on - strandat 289.481 kb on - strandat 289.481 kb on - strandat 289.481 kb on - strandat 289.481 kb on - strandat 289.506 kb on + strandat 289.531 kb on + strandat 289.600 kb on + strandat 289.601 kb on - strandat 289.601 kb on - strandat 289.601 kb on - strandat 289.601 kb on - strandat 289.606 kb on - strandat 289.606 kb on - strandat 289.783 kb on + strandat 289.783 kb on + strandat 289.783 kb on + strandat 289.783 kb on + strandat 289.783 kb on + strandat 289.783 kb on + strandat 289.783 kb on + strandat 289.783 kb on + strandat 289.783 kb on + strandat 289.783 kb on + strandat 289.783 kb on + strandat 289.783 kb on + strandat 289.783 kb on + strandat 289.784 kb on - strandat 289.784 kb on - strandat 289.784 kb on - strandat 289.784 kb on - strandat 289.784 kb on - strandat 289.784 kb on - strandat 289.785 kb on + strandat 289.785 kb on + strandat 289.786 kb on - strandat 289.797 kb on - strandat 289.797 kb on - strandat 289.797 kb on - strandat 289.797 kb on - strandat 289.797 kb on - strandat 289.797 kb on - strandat 289.797 kb on - strandat 289.848 kb on - strandat 289.848 kb on - strandat 289.848 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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286,843 + GFF4024 0.60 +1.2
286,843 + GFF4024 0.60 -0.5
286,844 - GFF4024 0.60 +0.3
286,844 - GFF4024 0.60 +1.3
287,142 + GFF4024 0.75 +1.3
287,143 - GFF4024 0.75 +0.4
287,185 + GFF4024 0.77 -0.1
287,186 - GFF4024 0.78 -0.8
287,212 + GFF4024 0.79 -1.0
287,212 + GFF4024 0.79 +0.0
287,212 + GFF4024 0.79 -0.5
287,212 + GFF4024 0.79 +0.6
287,212 + GFF4024 0.79 +0.1
287,212 + GFF4024 0.79 -0.4
287,212 + GFF4024 0.79 -0.9
287,212 + GFF4024 0.79 -0.0
287,213 - GFF4024 0.79 +0.0
287,213 - GFF4024 0.79 +0.1
287,213 - GFF4024 0.79 -0.5
287,213 - GFF4024 0.79 +0.6
287,213 - GFF4024 0.79 +0.2
287,213 - GFF4024 0.79 -0.4
287,296 + GFF4024 0.83 -0.8
287,297 - GFF4024 0.83 +0.8
287,297 - GFF4024 0.83 -0.7
287,297 - GFF4024 0.83 +0.4
287,389 + GFF4024 0.88 -0.5
287,389 + GFF4024 0.88 +0.2
287,390 - GFF4024 0.88 +0.6
287,390 - GFF4024 0.88 -0.5
287,539 + +0.7
287,552 - -1.0
287,632 + +0.8
287,633 - -1.1
287,654 + -0.4
287,654 + +0.4
287,654 + -1.7
287,654 + +0.5
287,821 + -0.5
287,849 - -3.1
287,849 - -1.2
288,010 + GFF4025 0.11 -1.1
288,010 + GFF4025 0.11 -1.3
288,010 + GFF4025 0.11 -0.9
288,010 + GFF4025 0.11 -1.1
288,010 + GFF4025 0.11 -2.6
288,011 - GFF4025 0.11 -3.1
288,011 - GFF4025 0.11 -1.3
288,011 - GFF4025 0.11 -1.9
288,011 - GFF4025 0.11 -1.1
288,011 - GFF4025 0.11 -0.3
288,011 - GFF4025 0.11 -0.8
288,214 + GFF4025 0.23 -2.1
288,214 + GFF4025 0.23 -2.8
288,215 - GFF4025 0.24 -0.3
288,314 - GFF4025 0.29 -0.3
288,314 - GFF4025 0.29 -1.6
288,455 - GFF4025 0.38 -1.3
288,463 + GFF4025 0.38 -1.5
288,584 - GFF4025 0.46 -0.3
288,584 - GFF4025 0.46 -0.5
288,766 + GFF4025 0.57 -1.3
288,799 + GFF4025 0.59 -1.5
288,799 + GFF4025 0.59 -0.1
288,800 - GFF4025 0.59 +0.1
288,937 + GFF4025 0.67 -2.7
288,937 + GFF4025 0.67 -0.6
288,938 - GFF4025 0.67 -1.3
288,938 - GFF4025 0.67 -0.3
288,948 + GFF4025 0.68 -0.3
288,948 + GFF4025 0.68 -2.6
288,948 + GFF4025 0.68 -0.9
288,949 - GFF4025 0.68 -1.9
288,949 - GFF4025 0.68 -0.6
288,949 - GFF4025 0.68 -2.3
288,949 - GFF4025 0.68 -1.6
288,949 - GFF4025 0.68 -2.4
288,964 + GFF4025 0.69 -1.8
289,055 - GFF4025 0.74 -1.5
289,477 + -0.9
289,481 - -0.4
289,481 - -1.9
289,481 - -1.0
289,481 - -1.6
289,481 - +0.1
289,506 + -0.2
289,531 + -0.3
289,600 + +0.3
289,601 - +0.5
289,601 - +0.7
289,601 - +0.9
289,601 - +0.2
289,606 - +0.1
289,606 - -0.3
289,783 + +0.2
289,783 + +0.4
289,783 + +0.1
289,783 + -0.4
289,783 + +0.1
289,783 + +0.2
289,783 + +0.1
289,783 + +0.5
289,783 + -0.4
289,783 + -1.1
289,783 + -0.8
289,783 + -0.6
289,783 + +0.3
289,784 - -0.2
289,784 - -0.3
289,784 - +0.3
289,784 - -0.6
289,784 - +0.7
289,784 - -0.1
289,785 + +0.3
289,785 + -0.2
289,786 - -0.1
289,797 - +2.0
289,797 - -1.0
289,797 - -0.6
289,797 - -0.1
289,797 - -0.4
289,797 - +1.3
289,797 - -0.5
289,848 - -0.7
289,848 - +0.4
289,848 - +0.2

Or see this region's nucleotide sequence