Strain Fitness in Pseudomonas sp. DMC3 around GFF3911

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3909 and GFF3910 overlap by 6 nucleotidesGFF3910 and GFF3911 are separated by 170 nucleotidesGFF3911 and GFF3912 are separated by 450 nucleotides GFF3909 - Ribosomal large subunit pseudouridine synthase E, at 164,687 to 165,322 GFF3909 GFF3910 - hypothetical protein, at 165,317 to 165,526 GFF3910 GFF3911 - Leucine-responsive regulatory protein, at 165,697 to 166,176 GFF3911 GFF3912 - hypothetical protein, at 166,627 to 167,565 GFF3912 Position (kb) 165 166 167Strain fitness (log2 ratio) -2 -1 0 1 2at 164.861 kb on + strand, within GFF3909at 164.861 kb on + strand, within GFF3909at 164.862 kb on - strand, within GFF3909at 164.862 kb on - strand, within GFF3909at 164.862 kb on - strand, within GFF3909at 164.862 kb on - strand, within GFF3909at 164.862 kb on - strand, within GFF3909at 164.862 kb on - strand, within GFF3909at 164.862 kb on - strand, within GFF3909at 164.990 kb on + strand, within GFF3909at 164.990 kb on + strand, within GFF3909at 164.991 kb on - strand, within GFF3909at 165.318 kb on + strandat 165.318 kb on + strandat 165.318 kb on + strandat 165.318 kb on + strandat 165.318 kb on + strandat 165.318 kb on + strandat 165.319 kb on - strandat 165.319 kb on - strandat 165.319 kb on - strandat 165.319 kb on - strandat 165.320 kb on + strandat 165.321 kb on - strandat 165.321 kb on - strandat 165.321 kb on - strandat 165.321 kb on - strandat 165.321 kb on - strandat 165.571 kb on - strandat 165.572 kb on + strandat 165.572 kb on + strandat 165.572 kb on + strandat 165.572 kb on + strandat 165.573 kb on - strandat 165.573 kb on - strandat 165.702 kb on + strandat 165.819 kb on - strand, within GFF3911at 165.854 kb on + strand, within GFF3911at 165.855 kb on - strand, within GFF3911at 165.855 kb on - strand, within GFF3911at 165.855 kb on - strand, within GFF3911at 165.971 kb on + strand, within GFF3911at 165.971 kb on + strand, within GFF3911at 165.971 kb on + strand, within GFF3911at 165.971 kb on + strand, within GFF3911at 165.972 kb on - strand, within GFF3911at 165.972 kb on - strand, within GFF3911at 165.972 kb on - strand, within GFF3911at 165.972 kb on - strand, within GFF3911at 166.029 kb on + strand, within GFF3911at 166.029 kb on + strand, within GFF3911at 166.029 kb on + strand, within GFF3911at 166.029 kb on + strand, within GFF3911at 166.029 kb on + strand, within GFF3911at 166.029 kb on + strand, within GFF3911at 166.030 kb on - strand, within GFF3911at 166.030 kb on - strand, within GFF3911at 166.030 kb on - strand, within GFF3911at 166.030 kb on - strand, within GFF3911at 166.030 kb on - strand, within GFF3911at 166.031 kb on + strand, within GFF3911at 166.031 kb on + strand, within GFF3911at 166.031 kb on + strand, within GFF3911at 166.031 kb on + strand, within GFF3911at 166.031 kb on + strand, within GFF3911at 166.032 kb on - strand, within GFF3911at 166.032 kb on - strand, within GFF3911at 166.032 kb on - strand, within GFF3911at 166.032 kb on - strand, within GFF3911at 166.032 kb on - strand, within GFF3911at 166.032 kb on - strand, within GFF3911at 166.032 kb on - strand, within GFF3911at 166.032 kb on - strand, within GFF3911at 166.032 kb on - strand, within GFF3911at 166.032 kb on - strand, within GFF3911at 166.032 kb on - strand, within GFF3911at 166.199 kb on - strandat 166.289 kb on + strandat 166.289 kb on + strandat 166.290 kb on - strandat 166.290 kb on - strandat 166.295 kb on + strandat 166.295 kb on + strandat 166.296 kb on - strandat 166.318 kb on - strandat 166.511 kb on + strandat 166.511 kb on + strandat 166.512 kb on - strandat 166.512 kb on - strandat 166.512 kb on - strandat 166.512 kb on - strandat 166.523 kb on + strandat 166.523 kb on + strandat 166.523 kb on + strandat 166.524 kb on - strandat 166.527 kb on + strandat 166.527 kb on + strandat 166.528 kb on - strandat 166.528 kb on - strandat 166.528 kb on - strandat 166.528 kb on - strandat 166.528 kb on - strandat 166.528 kb on - strandat 166.528 kb on - strandat 166.544 kb on - strandat 166.930 kb on + strand, within GFF3912at 166.931 kb on - strand, within GFF3912at 166.931 kb on - strand, within GFF3912at 166.931 kb on - strand, within GFF3912at 166.931 kb on - strand, within GFF3912at 166.933 kb on + strand, within GFF3912at 166.933 kb on + strand, within GFF3912at 166.933 kb on + strand, within GFF3912at 167.128 kb on + strand, within GFF3912at 167.128 kb on + strand, within GFF3912at 167.128 kb on + strand, within GFF3912at 167.129 kb on - strand, within GFF3912at 167.129 kb on - strand, within GFF3912at 167.129 kb on - strand, within GFF3912at 167.129 kb on - strand, within GFF3912at 167.129 kb on - strand, within GFF3912at 167.129 kb on - strand, within GFF3912at 167.134 kb on + strand, within GFF3912at 167.134 kb on + strand, within GFF3912at 167.134 kb on + strand, within GFF3912at 167.135 kb on - strand, within GFF3912at 167.147 kb on - strand, within GFF3912at 167.174 kb on - strand, within GFF3912

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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164,861 + GFF3909 0.27 -0.6
164,861 + GFF3909 0.27 -0.6
164,862 - GFF3909 0.28 -0.1
164,862 - GFF3909 0.28 +0.7
164,862 - GFF3909 0.28 -0.3
164,862 - GFF3909 0.28 -0.1
164,862 - GFF3909 0.28 -0.9
164,862 - GFF3909 0.28 -1.2
164,862 - GFF3909 0.28 -0.4
164,990 + GFF3909 0.48 +0.3
164,990 + GFF3909 0.48 -0.3
164,991 - GFF3909 0.48 +2.0
165,318 + -0.5
165,318 + -0.4
165,318 + -0.3
165,318 + +0.3
165,318 + -0.5
165,318 + +0.1
165,319 - +0.2
165,319 - +0.2
165,319 - +0.1
165,319 - +0.1
165,320 + +0.2
165,321 - -0.2
165,321 - +0.6
165,321 - -0.4
165,321 - +0.1
165,321 - +0.3
165,571 - +0.3
165,572 + -0.4
165,572 + +0.6
165,572 + +0.2
165,572 + -0.1
165,573 - -0.4
165,573 - -0.3
165,702 + +0.4
165,819 - GFF3911 0.25 -0.2
165,854 + GFF3911 0.33 -0.7
165,855 - GFF3911 0.33 +0.7
165,855 - GFF3911 0.33 -0.2
165,855 - GFF3911 0.33 +0.0
165,971 + GFF3911 0.57 -0.2
165,971 + GFF3911 0.57 -0.6
165,971 + GFF3911 0.57 -1.0
165,971 + GFF3911 0.57 +0.2
165,972 - GFF3911 0.57 -0.9
165,972 - GFF3911 0.57 -1.4
165,972 - GFF3911 0.57 +0.2
165,972 - GFF3911 0.57 -1.3
166,029 + GFF3911 0.69 -0.3
166,029 + GFF3911 0.69 +1.4
166,029 + GFF3911 0.69 +0.7
166,029 + GFF3911 0.69 -0.4
166,029 + GFF3911 0.69 -0.2
166,029 + GFF3911 0.69 -1.1
166,030 - GFF3911 0.69 -0.1
166,030 - GFF3911 0.69 -0.3
166,030 - GFF3911 0.69 -0.4
166,030 - GFF3911 0.69 +0.2
166,030 - GFF3911 0.69 +0.1
166,031 + GFF3911 0.70 -0.9
166,031 + GFF3911 0.70 -0.3
166,031 + GFF3911 0.70 -0.7
166,031 + GFF3911 0.70 -0.6
166,031 + GFF3911 0.70 -1.6
166,032 - GFF3911 0.70 -0.9
166,032 - GFF3911 0.70 -0.4
166,032 - GFF3911 0.70 -0.4
166,032 - GFF3911 0.70 +0.2
166,032 - GFF3911 0.70 +0.0
166,032 - GFF3911 0.70 -0.2
166,032 - GFF3911 0.70 -0.5
166,032 - GFF3911 0.70 -0.6
166,032 - GFF3911 0.70 +0.2
166,032 - GFF3911 0.70 +1.3
166,032 - GFF3911 0.70 +0.5
166,199 - -0.2
166,289 + +0.0
166,289 + -0.3
166,290 - -1.1
166,290 - +0.3
166,295 + +0.4
166,295 + +0.7
166,296 - -1.1
166,318 - -1.5
166,511 + +0.3
166,511 + -0.7
166,512 - +1.7
166,512 - -1.6
166,512 - +1.1
166,512 - +0.4
166,523 + -0.3
166,523 + -1.0
166,523 + +0.1
166,524 - -0.0
166,527 + -0.1
166,527 + -0.1
166,528 - +0.5
166,528 - +0.2
166,528 - +1.2
166,528 - -0.9
166,528 - -2.2
166,528 - +0.5
166,528 - -0.6
166,544 - -0.2
166,930 + GFF3912 0.32 +0.4
166,931 - GFF3912 0.32 -0.9
166,931 - GFF3912 0.32 -0.0
166,931 - GFF3912 0.32 -0.3
166,931 - GFF3912 0.32 -0.0
166,933 + GFF3912 0.33 -0.0
166,933 + GFF3912 0.33 -0.7
166,933 + GFF3912 0.33 -0.6
167,128 + GFF3912 0.53 +0.0
167,128 + GFF3912 0.53 +0.5
167,128 + GFF3912 0.53 +0.1
167,129 - GFF3912 0.53 -0.0
167,129 - GFF3912 0.53 +1.0
167,129 - GFF3912 0.53 +0.3
167,129 - GFF3912 0.53 +1.3
167,129 - GFF3912 0.53 -0.8
167,129 - GFF3912 0.53 -0.8
167,134 + GFF3912 0.54 +1.0
167,134 + GFF3912 0.54 -0.4
167,134 + GFF3912 0.54 +0.9
167,135 - GFF3912 0.54 +0.4
167,147 - GFF3912 0.55 -0.9
167,174 - GFF3912 0.58 -0.2

Or see this region's nucleotide sequence