Strain Fitness in Pseudomonas sp. DMC3 around GFF390

Experiment: D,L-Lactate and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF388 and GFF389 are separated by 93 nucleotidesGFF389 and GFF390 overlap by 29 nucleotidesGFF390 and GFF391 are separated by 153 nucleotidesGFF391 and GFF392 are separated by 120 nucleotides GFF388 - Alanine racemase, at 431,217 to 432,290 GFF388 GFF389 - 2-iminobutanoate/2-iminopropanoate deaminase, at 432,384 to 432,737 GFF389 GFF390 - D-amino acid dehydrogenase 1, at 432,709 to 434,013 GFF390 GFF391 - Leucine-responsive regulatory protein, at 434,167 to 434,655 GFF391 GFF392 - hypothetical protein, at 434,776 to 435,129 GFF392 Position (kb) 432 433 434 435Strain fitness (log2 ratio) -3 -2 -1 0 1at 432.379 kb on - strandat 432.538 kb on + strand, within GFF389at 432.538 kb on + strand, within GFF389at 432.539 kb on - strand, within GFF389at 432.539 kb on - strand, within GFF389at 432.670 kb on + strand, within GFF389at 432.670 kb on + strand, within GFF389at 432.671 kb on - strand, within GFF389at 432.778 kb on - strandat 432.927 kb on + strand, within GFF390at 433.121 kb on + strand, within GFF390at 433.121 kb on + strand, within GFF390at 433.121 kb on + strand, within GFF390at 433.121 kb on + strand, within GFF390at 433.121 kb on + strand, within GFF390at 433.122 kb on - strand, within GFF390at 433.122 kb on - strand, within GFF390at 433.122 kb on - strand, within GFF390at 433.122 kb on - strand, within GFF390at 433.247 kb on + strand, within GFF390at 433.247 kb on + strand, within GFF390at 433.268 kb on + strand, within GFF390at 433.269 kb on - strand, within GFF390at 433.328 kb on + strand, within GFF390at 433.329 kb on - strand, within GFF390at 433.501 kb on - strand, within GFF390at 433.626 kb on - strand, within GFF390at 433.626 kb on - strand, within GFF390at 433.757 kb on + strand, within GFF390at 433.757 kb on + strand, within GFF390at 433.757 kb on + strand, within GFF390at 433.757 kb on + strand, within GFF390at 433.758 kb on - strand, within GFF390at 433.961 kb on + strandat 433.961 kb on + strandat 433.961 kb on + strandat 433.961 kb on + strandat 433.961 kb on + strandat 433.961 kb on + strandat 433.961 kb on + strandat 433.962 kb on - strandat 433.962 kb on - strandat 433.962 kb on - strandat 433.964 kb on + strandat 433.964 kb on + strandat 433.964 kb on + strandat 433.964 kb on + strandat 433.964 kb on + strandat 433.964 kb on + strandat 433.964 kb on + strandat 433.965 kb on - strandat 433.965 kb on - strandat 433.965 kb on - strandat 433.965 kb on - strandat 433.965 kb on - strandat 433.965 kb on - strandat 433.965 kb on - strandat 433.965 kb on - strandat 433.965 kb on - strandat 434.053 kb on + strandat 434.053 kb on + strandat 434.054 kb on - strandat 434.054 kb on - strandat 434.054 kb on - strandat 434.075 kb on + strandat 434.076 kb on - strandat 434.104 kb on + strandat 434.172 kb on + strandat 434.173 kb on - strandat 434.344 kb on + strand, within GFF391at 434.344 kb on + strand, within GFF391at 434.345 kb on - strand, within GFF391at 434.413 kb on + strand, within GFF391at 434.414 kb on - strand, within GFF391at 434.507 kb on - strand, within GFF391at 434.542 kb on + strand, within GFF391at 434.602 kb on + strand, within GFF391at 434.602 kb on + strand, within GFF391at 434.602 kb on + strand, within GFF391at 434.602 kb on + strand, within GFF391at 434.602 kb on + strand, within GFF391at 434.602 kb on + strand, within GFF391at 434.602 kb on + strand, within GFF391at 434.602 kb on + strand, within GFF391at 434.602 kb on + strand, within GFF391at 434.602 kb on + strand, within GFF391at 434.602 kb on + strand, within GFF391at 434.602 kb on + strand, within GFF391at 434.602 kb on + strand, within GFF391at 434.602 kb on + strand, within GFF391at 434.602 kb on + strand, within GFF391at 434.602 kb on + strand, within GFF391at 434.602 kb on + strand, within GFF391at 434.602 kb on + strand, within GFF391at 434.602 kb on + strand, within GFF391at 434.602 kb on + strand, within GFF391at 434.603 kb on - strand, within GFF391at 434.603 kb on - strand, within GFF391at 434.603 kb on - strand, within GFF391at 434.603 kb on - strand, within GFF391at 434.603 kb on - strand, within GFF391at 434.603 kb on - strand, within GFF391at 434.603 kb on - strand, within GFF391at 434.603 kb on - strand, within GFF391at 434.603 kb on - strand, within GFF391at 434.603 kb on - strand, within GFF391at 434.603 kb on - strand, within GFF391at 434.603 kb on - strand, within GFF391at 434.603 kb on - strand, within GFF391at 434.603 kb on - strand, within GFF391at 434.603 kb on - strand, within GFF391at 434.603 kb on - strand, within GFF391at 434.603 kb on - strand, within GFF391at 434.603 kb on - strand, within GFF391at 434.603 kb on - strand, within GFF391at 434.603 kb on - strand, within GFF391at 434.603 kb on - strand, within GFF391at 434.603 kb on - strand, within GFF391at 434.603 kb on - strand, within GFF391at 434.603 kb on - strand, within GFF391at 434.603 kb on - strand, within GFF391at 434.604 kb on + strand, within GFF391at 434.604 kb on + strand, within GFF391at 434.605 kb on - strand, within GFF391at 434.605 kb on - strand, within GFF391at 434.777 kb on + strandat 434.777 kb on + strandat 434.777 kb on + strandat 434.777 kb on + strandat 434.807 kb on + strandat 434.807 kb on + strandat 434.807 kb on + strandat 434.807 kb on + strandat 434.807 kb on + strandat 434.807 kb on + strandat 434.807 kb on + strandat 434.807 kb on + strandat 434.808 kb on - strandat 434.889 kb on + strand, within GFF392at 434.924 kb on + strand, within GFF392at 434.924 kb on + strand, within GFF392at 434.924 kb on + strand, within GFF392at 434.924 kb on + strand, within GFF392at 434.925 kb on - strand, within GFF392at 434.925 kb on - strand, within GFF392at 434.925 kb on - strand, within GFF392at 434.925 kb on - strand, within GFF392

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
remove
432,379 - +0.4
432,538 + GFF389 0.44 -0.7
432,538 + GFF389 0.44 -1.3
432,539 - GFF389 0.44 -1.5
432,539 - GFF389 0.44 +0.4
432,670 + GFF389 0.81 -1.9
432,670 + GFF389 0.81 -2.3
432,671 - GFF389 0.81 -0.4
432,778 - -0.0
432,927 + GFF390 0.17 -0.4
433,121 + GFF390 0.32 +0.4
433,121 + GFF390 0.32 -0.1
433,121 + GFF390 0.32 -1.5
433,121 + GFF390 0.32 -0.5
433,121 + GFF390 0.32 -0.4
433,122 - GFF390 0.32 -0.6
433,122 - GFF390 0.32 -0.5
433,122 - GFF390 0.32 -3.3
433,122 - GFF390 0.32 -0.5
433,247 + GFF390 0.41 -1.5
433,247 + GFF390 0.41 -0.3
433,268 + GFF390 0.43 -1.6
433,269 - GFF390 0.43 -1.6
433,328 + GFF390 0.47 -0.6
433,329 - GFF390 0.48 +0.2
433,501 - GFF390 0.61 -0.5
433,626 - GFF390 0.70 -0.6
433,626 - GFF390 0.70 -2.7
433,757 + GFF390 0.80 -2.3
433,757 + GFF390 0.80 -1.6
433,757 + GFF390 0.80 -0.8
433,757 + GFF390 0.80 +1.6
433,758 - GFF390 0.80 -0.5
433,961 + -0.9
433,961 + -0.1
433,961 + -1.3
433,961 + -0.3
433,961 + -0.4
433,961 + -0.2
433,961 + +0.2
433,962 - -0.0
433,962 - -0.6
433,962 - -0.7
433,964 + -0.9
433,964 + -2.7
433,964 + -0.9
433,964 + +0.8
433,964 + -0.5
433,964 + -0.5
433,964 + +0.9
433,965 - -0.5
433,965 - -2.3
433,965 - +0.5
433,965 - -0.4
433,965 - -0.9
433,965 - -1.6
433,965 - -0.8
433,965 - -0.1
433,965 - -1.6
434,053 + -0.7
434,053 + -0.3
434,054 - -1.2
434,054 - +0.3
434,054 - +1.1
434,075 + -0.8
434,076 - -1.2
434,104 + -1.7
434,172 + +0.5
434,173 - -0.8
434,344 + GFF391 0.36 +0.4
434,344 + GFF391 0.36 +0.4
434,345 - GFF391 0.36 +0.4
434,413 + GFF391 0.50 +0.3
434,414 - GFF391 0.51 -0.1
434,507 - GFF391 0.70 -0.5
434,542 + GFF391 0.77 -0.6
434,602 + GFF391 0.89 -0.0
434,602 + GFF391 0.89 -0.7
434,602 + GFF391 0.89 +0.5
434,602 + GFF391 0.89 -0.4
434,602 + GFF391 0.89 +0.3
434,602 + GFF391 0.89 -0.5
434,602 + GFF391 0.89 -0.6
434,602 + GFF391 0.89 +0.0
434,602 + GFF391 0.89 -0.8
434,602 + GFF391 0.89 +0.6
434,602 + GFF391 0.89 +0.2
434,602 + GFF391 0.89 -1.2
434,602 + GFF391 0.89 +0.6
434,602 + GFF391 0.89 +0.1
434,602 + GFF391 0.89 -1.0
434,602 + GFF391 0.89 -0.5
434,602 + GFF391 0.89 -0.3
434,602 + GFF391 0.89 -1.0
434,602 + GFF391 0.89 -1.7
434,602 + GFF391 0.89 +0.6
434,603 - GFF391 0.89 -0.3
434,603 - GFF391 0.89 +0.1
434,603 - GFF391 0.89 +0.3
434,603 - GFF391 0.89 -0.1
434,603 - GFF391 0.89 -1.2
434,603 - GFF391 0.89 +1.1
434,603 - GFF391 0.89 -0.5
434,603 - GFF391 0.89 -1.4
434,603 - GFF391 0.89 -0.4
434,603 - GFF391 0.89 +0.3
434,603 - GFF391 0.89 -0.7
434,603 - GFF391 0.89 +0.7
434,603 - GFF391 0.89 -0.5
434,603 - GFF391 0.89 +0.6
434,603 - GFF391 0.89 -1.1
434,603 - GFF391 0.89 -0.1
434,603 - GFF391 0.89 -1.1
434,603 - GFF391 0.89 -1.0
434,603 - GFF391 0.89 -0.4
434,603 - GFF391 0.89 +0.3
434,603 - GFF391 0.89 -0.7
434,603 - GFF391 0.89 -0.9
434,603 - GFF391 0.89 -0.5
434,603 - GFF391 0.89 -0.6
434,603 - GFF391 0.89 -0.1
434,604 + GFF391 0.89 +0.7
434,604 + GFF391 0.89 -0.0
434,605 - GFF391 0.90 -0.2
434,605 - GFF391 0.90 +0.5
434,777 + +1.5
434,777 + +1.3
434,777 + -0.1
434,777 + +0.2
434,807 + -0.4
434,807 + +0.8
434,807 + -0.2
434,807 + -0.0
434,807 + -1.0
434,807 + +0.4
434,807 + +0.5
434,807 + -0.3
434,808 - -0.1
434,889 + GFF392 0.32 +0.9
434,924 + GFF392 0.42 -0.9
434,924 + GFF392 0.42 -0.8
434,924 + GFF392 0.42 +0.0
434,924 + GFF392 0.42 +0.7
434,925 - GFF392 0.42 +0.5
434,925 - GFF392 0.42 +0.5
434,925 - GFF392 0.42 +0.1
434,925 - GFF392 0.42 +0.5

Or see this region's nucleotide sequence