Strain Fitness in Pseudomonas sp. DMC3 around GFF3853

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3851 and GFF3852 are separated by 112 nucleotidesGFF3852 and GFF3853 are separated by 4 nucleotidesGFF3853 and GFF3854 are separated by 228 nucleotidesGFF3854 and GFF3855 are separated by 115 nucleotides GFF3851 - Inorganic pyrophosphatase, at 99,169 to 99,696 GFF3851 GFF3852 - Protein MtfA, at 99,809 to 100,621 GFF3852 GFF3853 - Protein DedA, at 100,626 to 101,276 GFF3853 GFF3854 - hypothetical protein, at 101,505 to 101,966 GFF3854 GFF3855 - Ethanolamine ammonia-lyase light chain, at 102,082 to 102,906 GFF3855 Position (kb) 100 101 102Strain fitness (log2 ratio) -2 -1 0 1 2at 99.763 kb on - strandat 99.810 kb on + strandat 99.810 kb on + strandat 99.811 kb on - strandat 99.811 kb on - strandat 99.826 kb on - strandat 99.900 kb on + strand, within GFF3852at 99.900 kb on + strand, within GFF3852at 99.900 kb on + strand, within GFF3852at 99.900 kb on + strand, within GFF3852at 99.900 kb on + strand, within GFF3852at 99.901 kb on - strand, within GFF3852at 99.948 kb on + strand, within GFF3852at 99.949 kb on - strand, within GFF3852at 99.949 kb on - strand, within GFF3852at 99.949 kb on - strand, within GFF3852at 99.994 kb on - strand, within GFF3852at 100.054 kb on - strand, within GFF3852at 100.138 kb on + strand, within GFF3852at 100.139 kb on - strand, within GFF3852at 100.139 kb on - strand, within GFF3852at 100.139 kb on - strand, within GFF3852at 100.176 kb on + strand, within GFF3852at 100.202 kb on + strand, within GFF3852at 100.353 kb on + strand, within GFF3852at 100.762 kb on + strand, within GFF3853at 100.762 kb on + strand, within GFF3853at 100.763 kb on - strand, within GFF3853at 100.952 kb on - strand, within GFF3853at 101.020 kb on + strand, within GFF3853at 101.020 kb on + strand, within GFF3853at 101.021 kb on - strand, within GFF3853at 101.027 kb on + strand, within GFF3853at 101.194 kb on + strand, within GFF3853at 101.194 kb on + strand, within GFF3853at 101.195 kb on - strand, within GFF3853at 101.195 kb on - strand, within GFF3853at 101.209 kb on + strand, within GFF3853at 101.209 kb on + strand, within GFF3853at 101.209 kb on + strand, within GFF3853at 101.209 kb on + strand, within GFF3853at 101.210 kb on - strand, within GFF3853at 101.210 kb on - strand, within GFF3853at 101.210 kb on - strand, within GFF3853at 101.210 kb on - strand, within GFF3853at 101.210 kb on - strand, within GFF3853at 101.233 kb on + strandat 101.233 kb on + strandat 101.234 kb on - strandat 101.234 kb on - strandat 101.234 kb on - strandat 101.234 kb on - strandat 101.252 kb on + strandat 101.252 kb on + strandat 101.253 kb on - strandat 101.288 kb on + strandat 101.330 kb on + strandat 101.330 kb on + strandat 101.330 kb on + strandat 101.331 kb on - strandat 101.331 kb on - strandat 101.336 kb on + strandat 101.337 kb on - strandat 101.337 kb on - strandat 101.337 kb on - strandat 101.337 kb on - strandat 101.348 kb on + strandat 101.358 kb on + strandat 101.358 kb on + strandat 101.359 kb on - strandat 101.359 kb on - strandat 101.380 kb on + strandat 101.381 kb on - strandat 101.381 kb on - strandat 101.381 kb on - strandat 101.382 kb on + strandat 101.382 kb on + strandat 101.382 kb on + strandat 101.382 kb on + strandat 101.382 kb on + strandat 101.383 kb on - strandat 101.383 kb on - strandat 101.383 kb on - strandat 101.529 kb on + strandat 101.529 kb on + strandat 101.529 kb on + strandat 101.533 kb on + strandat 101.533 kb on + strandat 101.533 kb on + strandat 101.533 kb on + strandat 101.533 kb on + strandat 101.533 kb on + strandat 101.533 kb on + strandat 101.710 kb on + strand, within GFF3854at 101.710 kb on + strand, within GFF3854at 101.710 kb on + strand, within GFF3854at 101.710 kb on + strand, within GFF3854at 101.710 kb on + strand, within GFF3854at 101.710 kb on + strand, within GFF3854at 101.710 kb on + strand, within GFF3854at 101.710 kb on + strand, within GFF3854at 101.711 kb on - strand, within GFF3854at 101.711 kb on - strand, within GFF3854at 101.711 kb on - strand, within GFF3854at 101.711 kb on - strand, within GFF3854at 101.711 kb on - strand, within GFF3854at 101.711 kb on - strand, within GFF3854at 101.711 kb on - strand, within GFF3854at 101.711 kb on - strand, within GFF3854at 101.714 kb on + strand, within GFF3854at 101.714 kb on + strand, within GFF3854at 101.714 kb on + strand, within GFF3854at 101.715 kb on - strand, within GFF3854at 101.715 kb on - strand, within GFF3854at 101.818 kb on + strand, within GFF3854at 101.818 kb on + strand, within GFF3854at 101.819 kb on - strand, within GFF3854at 101.819 kb on - strand, within GFF3854at 101.819 kb on - strand, within GFF3854at 101.819 kb on - strand, within GFF3854at 101.893 kb on + strand, within GFF3854at 101.894 kb on - strand, within GFF3854at 101.894 kb on - strand, within GFF3854at 101.905 kb on + strand, within GFF3854at 101.905 kb on + strand, within GFF3854at 101.958 kb on - strandat 101.969 kb on + strandat 101.969 kb on + strandat 101.969 kb on + strandat 101.969 kb on + strandat 101.969 kb on + strandat 101.969 kb on + strandat 101.970 kb on - strandat 101.970 kb on - strandat 102.215 kb on + strand, within GFF3855at 102.216 kb on - strand, within GFF3855at 102.242 kb on + strand, within GFF3855at 102.242 kb on + strand, within GFF3855at 102.242 kb on + strand, within GFF3855at 102.243 kb on - strand, within GFF3855at 102.243 kb on - strand, within GFF3855

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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99,763 - -0.0
99,810 + -0.6
99,810 + +0.1
99,811 - +0.1
99,811 - +0.4
99,826 - +0.6
99,900 + GFF3852 0.11 -0.6
99,900 + GFF3852 0.11 +0.8
99,900 + GFF3852 0.11 +2.0
99,900 + GFF3852 0.11 -1.0
99,900 + GFF3852 0.11 -0.2
99,901 - GFF3852 0.11 -0.2
99,948 + GFF3852 0.17 -1.0
99,949 - GFF3852 0.17 -0.5
99,949 - GFF3852 0.17 +0.3
99,949 - GFF3852 0.17 -1.6
99,994 - GFF3852 0.23 -0.4
100,054 - GFF3852 0.30 -0.3
100,138 + GFF3852 0.40 -0.4
100,139 - GFF3852 0.41 +0.1
100,139 - GFF3852 0.41 +0.8
100,139 - GFF3852 0.41 +0.8
100,176 + GFF3852 0.45 +0.1
100,202 + GFF3852 0.48 -0.6
100,353 + GFF3852 0.67 -0.5
100,762 + GFF3853 0.21 -0.6
100,762 + GFF3853 0.21 -0.1
100,763 - GFF3853 0.21 -1.4
100,952 - GFF3853 0.50 -1.1
101,020 + GFF3853 0.61 -0.9
101,020 + GFF3853 0.61 -0.2
101,021 - GFF3853 0.61 -0.7
101,027 + GFF3853 0.62 +0.2
101,194 + GFF3853 0.87 -1.1
101,194 + GFF3853 0.87 -0.7
101,195 - GFF3853 0.87 -0.9
101,195 - GFF3853 0.87 +0.9
101,209 + GFF3853 0.90 -0.6
101,209 + GFF3853 0.90 +0.0
101,209 + GFF3853 0.90 -0.1
101,209 + GFF3853 0.90 -1.2
101,210 - GFF3853 0.90 -0.3
101,210 - GFF3853 0.90 +0.2
101,210 - GFF3853 0.90 -0.8
101,210 - GFF3853 0.90 -0.0
101,210 - GFF3853 0.90 -2.4
101,233 + -1.3
101,233 + -1.3
101,234 - +0.4
101,234 - +0.3
101,234 - -0.1
101,234 - -1.6
101,252 + +0.2
101,252 + -0.3
101,253 - +1.3
101,288 + +0.2
101,330 + -1.1
101,330 + -0.0
101,330 + +0.2
101,331 - +0.5
101,331 - -0.7
101,336 + +0.0
101,337 - -0.2
101,337 - -0.1
101,337 - -0.9
101,337 - -0.5
101,348 + +1.0
101,358 + +1.3
101,358 + +0.7
101,359 - -0.3
101,359 - -0.5
101,380 + +0.2
101,381 - -0.5
101,381 - -0.2
101,381 - +1.0
101,382 + +0.1
101,382 + +0.6
101,382 + -0.8
101,382 + +0.3
101,382 + +2.5
101,383 - -0.3
101,383 - +0.4
101,383 - +0.4
101,529 + -0.8
101,529 + -0.6
101,529 + +0.5
101,533 + +0.4
101,533 + -0.8
101,533 + -0.2
101,533 + -1.1
101,533 + -1.5
101,533 + +1.2
101,533 + -0.4
101,710 + GFF3854 0.44 +0.5
101,710 + GFF3854 0.44 -0.1
101,710 + GFF3854 0.44 -0.4
101,710 + GFF3854 0.44 -0.3
101,710 + GFF3854 0.44 +0.4
101,710 + GFF3854 0.44 -0.3
101,710 + GFF3854 0.44 +0.3
101,710 + GFF3854 0.44 +0.7
101,711 - GFF3854 0.45 -0.6
101,711 - GFF3854 0.45 -2.3
101,711 - GFF3854 0.45 +1.2
101,711 - GFF3854 0.45 +0.9
101,711 - GFF3854 0.45 +0.0
101,711 - GFF3854 0.45 -0.1
101,711 - GFF3854 0.45 -1.2
101,711 - GFF3854 0.45 -0.0
101,714 + GFF3854 0.45 -0.0
101,714 + GFF3854 0.45 +0.1
101,714 + GFF3854 0.45 -0.9
101,715 - GFF3854 0.45 +0.4
101,715 - GFF3854 0.45 +1.5
101,818 + GFF3854 0.68 -1.5
101,818 + GFF3854 0.68 +0.7
101,819 - GFF3854 0.68 -0.8
101,819 - GFF3854 0.68 -1.4
101,819 - GFF3854 0.68 +1.2
101,819 - GFF3854 0.68 -0.5
101,893 + GFF3854 0.84 -0.7
101,894 - GFF3854 0.84 +0.6
101,894 - GFF3854 0.84 -0.2
101,905 + GFF3854 0.87 -0.9
101,905 + GFF3854 0.87 -2.3
101,958 - -0.2
101,969 + -0.6
101,969 + +0.0
101,969 + +0.7
101,969 + -0.0
101,969 + +0.2
101,969 + -0.1
101,970 - -1.2
101,970 - +0.1
102,215 + GFF3855 0.16 +1.2
102,216 - GFF3855 0.16 +0.4
102,242 + GFF3855 0.19 -0.4
102,242 + GFF3855 0.19 -0.2
102,242 + GFF3855 0.19 +0.0
102,243 - GFF3855 0.20 -1.1
102,243 - GFF3855 0.20 -0.1

Or see this region's nucleotide sequence