Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3737 and GFF3738 are separated by 33 nucleotides GFF3738 and GFF3739 are separated by 31 nucleotides GFF3739 and GFF3740 are separated by 810 nucleotides
GFF3737 - Fumarylpyruvate hydrolase, at 351,289 to 351,975
GFF3737
GFF3738 - 3-beta-hydroxycholanate 3-dehydrogenase (NADP(+)), at 352,009 to 352,767
GFF3738
GFF3739 - 2-ketogluconate reductase, at 352,799 to 353,755
GFF3739
GFF3740 - hypothetical protein, at 354,566 to 354,925
GFF3740
Position (kb) 352
353
354 Strain fitness (log2 ratio) -2
-1
0
1 at 351.810 kb on - strand, within GFF3737 at 351.819 kb on - strand, within GFF3737 at 351.819 kb on - strand, within GFF3737 at 352.008 kb on + strand at 352.008 kb on + strand at 352.009 kb on - strand at 352.009 kb on - strand at 352.009 kb on - strand at 352.009 kb on - strand at 352.247 kb on - strand, within GFF3738 at 352.477 kb on + strand, within GFF3738 at 352.685 kb on - strand, within GFF3738 at 352.685 kb on - strand, within GFF3738 at 352.685 kb on - strand, within GFF3738 at 352.780 kb on - strand at 352.876 kb on - strand at 352.887 kb on - strand at 352.910 kb on + strand, within GFF3739 at 352.910 kb on + strand, within GFF3739 at 352.911 kb on - strand, within GFF3739 at 352.911 kb on - strand, within GFF3739 at 352.915 kb on - strand, within GFF3739 at 352.915 kb on - strand, within GFF3739 at 353.327 kb on + strand, within GFF3739 at 353.327 kb on + strand, within GFF3739 at 353.328 kb on - strand, within GFF3739 at 353.486 kb on + strand, within GFF3739 at 353.621 kb on - strand, within GFF3739 at 353.714 kb on - strand at 353.834 kb on + strand at 353.834 kb on + strand at 353.834 kb on + strand at 354.010 kb on + strand at 354.145 kb on + strand at 354.346 kb on + strand at 354.379 kb on - strand at 354.379 kb on - strand at 354.429 kb on + strand at 354.429 kb on + strand at 354.430 kb on - strand at 354.447 kb on - strand at 354.496 kb on - strand at 354.496 kb on - strand at 354.577 kb on + strand at 354.577 kb on + strand at 354.577 kb on + strand at 354.578 kb on - strand at 354.605 kb on - strand, within GFF3740 at 354.675 kb on + strand, within GFF3740 at 354.675 kb on + strand, within GFF3740 at 354.710 kb on + strand, within GFF3740
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 351,810 - GFF3737 0.76 -0.5 351,819 - GFF3737 0.77 -1.0 351,819 - GFF3737 0.77 -0.2 352,008 + -0.2 352,008 + -0.9 352,009 - -1.4 352,009 - +0.0 352,009 - +0.9 352,009 - -0.4 352,247 - GFF3738 0.31 -1.5 352,477 + GFF3738 0.62 +0.3 352,685 - GFF3738 0.89 +0.2 352,685 - GFF3738 0.89 -0.5 352,685 - GFF3738 0.89 -0.1 352,780 - -0.5 352,876 - +1.0 352,887 - -0.0 352,910 + GFF3739 0.12 +0.7 352,910 + GFF3739 0.12 -1.8 352,911 - GFF3739 0.12 +0.3 352,911 - GFF3739 0.12 -1.1 352,915 - GFF3739 0.12 -0.9 352,915 - GFF3739 0.12 -0.9 353,327 + GFF3739 0.55 -1.2 353,327 + GFF3739 0.55 -0.5 353,328 - GFF3739 0.55 +1.0 353,486 + GFF3739 0.72 +0.7 353,621 - GFF3739 0.86 -1.2 353,714 - -1.4 353,834 + -0.8 353,834 + +0.4 353,834 + -0.7 354,010 + -0.1 354,145 + +0.1 354,346 + -1.2 354,379 - -0.5 354,379 - -1.3 354,429 + -0.1 354,429 + -0.5 354,430 - -0.7 354,447 - +0.9 354,496 - -0.4 354,496 - -0.7 354,577 + -1.5 354,577 + +0.8 354,577 + +0.4 354,578 - -1.2 354,605 - GFF3740 0.11 +0.0 354,675 + GFF3740 0.30 -0.2 354,675 + GFF3740 0.30 -0.2 354,710 + GFF3740 0.40 -0.6
Or see this region's nucleotide sequence