Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3695 and GFF3696 are separated by 63 nucleotides GFF3696 and GFF3697 are separated by 105 nucleotides GFF3697 and GFF3698 overlap by 4 nucleotides GFF3698 and GFF3699 are separated by 350 nucleotides
GFF3695 - hypothetical protein, at 305,574 to 306,284
GFF3695
GFF3696 - hypothetical protein, at 306,348 to 306,665
GFF3696
GFF3697 - hypothetical protein, at 306,771 to 307,265
GFF3697
GFF3698 - hypothetical protein, at 307,262 to 307,738
GFF3698
GFF3699 - HTH-type transcriptional regulator HdfR, at 308,089 to 308,952
GFF3699
Position (kb) 307
308 Strain fitness (log2 ratio) -2
-1
0
1 at 306.293 kb on + strand at 306.359 kb on - strand at 306.359 kb on - strand at 306.370 kb on + strand at 306.459 kb on + strand, within GFF3696 at 306.459 kb on + strand, within GFF3696 at 306.460 kb on - strand, within GFF3696 at 306.663 kb on + strand at 306.663 kb on + strand at 306.664 kb on - strand at 306.664 kb on - strand at 306.766 kb on + strand at 307.051 kb on + strand, within GFF3697 at 307.051 kb on + strand, within GFF3697 at 307.051 kb on + strand, within GFF3697 at 307.051 kb on + strand, within GFF3697 at 307.052 kb on - strand, within GFF3697 at 307.052 kb on - strand, within GFF3697 at 307.052 kb on - strand, within GFF3697 at 307.052 kb on - strand, within GFF3697 at 307.052 kb on - strand, within GFF3697 at 307.152 kb on - strand, within GFF3697 at 307.152 kb on - strand, within GFF3697 at 307.207 kb on + strand, within GFF3697 at 307.207 kb on + strand, within GFF3697 at 307.207 kb on + strand, within GFF3697 at 307.207 kb on + strand, within GFF3697 at 307.269 kb on + strand at 307.269 kb on + strand at 307.296 kb on + strand at 307.296 kb on + strand at 307.350 kb on + strand, within GFF3698 at 307.356 kb on + strand, within GFF3698 at 307.356 kb on + strand, within GFF3698 at 307.362 kb on + strand, within GFF3698 at 307.362 kb on + strand, within GFF3698 at 307.363 kb on - strand, within GFF3698 at 307.363 kb on - strand, within GFF3698 at 307.449 kb on + strand, within GFF3698 at 307.450 kb on - strand, within GFF3698 at 307.450 kb on - strand, within GFF3698 at 307.537 kb on + strand, within GFF3698 at 307.538 kb on - strand, within GFF3698 at 307.834 kb on + strand at 307.901 kb on + strand at 307.901 kb on + strand at 307.901 kb on + strand at 307.902 kb on - strand at 307.903 kb on + strand at 307.903 kb on + strand at 307.903 kb on + strand at 308.052 kb on + strand at 308.052 kb on + strand at 308.052 kb on + strand at 308.223 kb on + strand, within GFF3699 at 308.223 kb on + strand, within GFF3699 at 308.287 kb on + strand, within GFF3699 at 308.288 kb on - strand, within GFF3699 at 308.524 kb on + strand, within GFF3699 at 308.614 kb on + strand, within GFF3699 at 308.614 kb on + strand, within GFF3699 at 308.615 kb on - strand, within GFF3699 at 308.615 kb on - strand, within GFF3699 at 308.620 kb on + strand, within GFF3699 at 308.621 kb on - strand, within GFF3699 at 308.621 kb on - strand, within GFF3699 at 308.621 kb on - strand, within GFF3699 at 308.722 kb on + strand, within GFF3699 at 308.722 kb on + strand, within GFF3699 at 308.722 kb on + strand, within GFF3699 at 308.722 kb on + strand, within GFF3699 at 308.722 kb on + strand, within GFF3699 at 308.722 kb on + strand, within GFF3699 at 308.722 kb on + strand, within GFF3699 at 308.723 kb on - strand, within GFF3699 at 308.723 kb on - strand, within GFF3699 at 308.723 kb on - strand, within GFF3699 at 308.723 kb on - strand, within GFF3699
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 306,293 + -0.3 306,359 - -0.4 306,359 - -0.8 306,370 + -0.6 306,459 + GFF3696 0.35 +0.7 306,459 + GFF3696 0.35 -0.4 306,460 - GFF3696 0.35 -1.0 306,663 + -2.1 306,663 + +0.2 306,664 - -0.6 306,664 - -1.2 306,766 + -0.1 307,051 + GFF3697 0.57 -1.6 307,051 + GFF3697 0.57 -1.9 307,051 + GFF3697 0.57 -1.2 307,051 + GFF3697 0.57 -0.9 307,052 - GFF3697 0.57 -0.3 307,052 - GFF3697 0.57 -0.0 307,052 - GFF3697 0.57 -0.6 307,052 - GFF3697 0.57 -0.3 307,052 - GFF3697 0.57 +0.4 307,152 - GFF3697 0.77 +0.7 307,152 - GFF3697 0.77 -0.7 307,207 + GFF3697 0.88 -0.1 307,207 + GFF3697 0.88 +0.1 307,207 + GFF3697 0.88 -0.0 307,207 + GFF3697 0.88 +0.6 307,269 + -0.0 307,269 + -0.8 307,296 + -0.5 307,296 + +0.9 307,350 + GFF3698 0.18 -0.6 307,356 + GFF3698 0.20 -1.1 307,356 + GFF3698 0.20 -1.7 307,362 + GFF3698 0.21 +0.0 307,362 + GFF3698 0.21 -0.7 307,363 - GFF3698 0.21 -1.2 307,363 - GFF3698 0.21 -0.8 307,449 + GFF3698 0.39 -1.6 307,450 - GFF3698 0.39 -0.1 307,450 - GFF3698 0.39 -0.9 307,537 + GFF3698 0.58 -1.2 307,538 - GFF3698 0.58 +0.1 307,834 + -0.9 307,901 + +0.7 307,901 + +1.3 307,901 + +0.1 307,902 - -2.0 307,903 + +0.5 307,903 + -0.3 307,903 + -0.1 308,052 + -1.0 308,052 + +0.3 308,052 + -0.1 308,223 + GFF3699 0.16 -1.2 308,223 + GFF3699 0.16 +0.7 308,287 + GFF3699 0.23 -0.4 308,288 - GFF3699 0.23 -1.2 308,524 + GFF3699 0.50 -0.5 308,614 + GFF3699 0.61 -0.1 308,614 + GFF3699 0.61 -1.6 308,615 - GFF3699 0.61 +0.6 308,615 - GFF3699 0.61 -1.4 308,620 + GFF3699 0.61 -0.2 308,621 - GFF3699 0.62 -2.2 308,621 - GFF3699 0.62 +0.2 308,621 - GFF3699 0.62 +0.1 308,722 + GFF3699 0.73 -0.6 308,722 + GFF3699 0.73 -1.9 308,722 + GFF3699 0.73 +0.2 308,722 + GFF3699 0.73 -0.4 308,722 + GFF3699 0.73 -0.4 308,722 + GFF3699 0.73 -0.4 308,722 + GFF3699 0.73 +0.6 308,723 - GFF3699 0.73 -0.3 308,723 - GFF3699 0.73 +0.3 308,723 - GFF3699 0.73 -1.1 308,723 - GFF3699 0.73 +1.0
Or see this region's nucleotide sequence