Strain Fitness in Pseudomonas sp. DMC3 around GFF3687

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3686 and GFF3687 are separated by 156 nucleotidesGFF3687 and GFF3688 are separated by 46 nucleotides GFF3686 - hypothetical protein, at 280,437 to 282,731 GFF3686 GFF3687 - Methionine synthase, at 282,888 to 286,598 GFF3687 GFF3688 - hypothetical protein, at 286,645 to 294,003 GFF3688 Position (kb) 282 283 284 285 286 287Strain fitness (log2 ratio) -3 -2 -1 0 1at 281.902 kb on + strand, within GFF3686at 281.905 kb on + strand, within GFF3686at 281.905 kb on + strand, within GFF3686at 281.905 kb on + strand, within GFF3686at 281.905 kb on + strand, within GFF3686at 281.905 kb on + strand, within GFF3686at 281.906 kb on - strand, within GFF3686at 281.906 kb on - strand, within GFF3686at 281.906 kb on - strand, within GFF3686at 281.906 kb on - strand, within GFF3686at 281.906 kb on - strand, within GFF3686at 281.906 kb on - strand, within GFF3686at 281.906 kb on - strand, within GFF3686at 281.906 kb on - strand, within GFF3686at 281.906 kb on - strand, within GFF3686at 281.999 kb on - strand, within GFF3686at 282.025 kb on + strand, within GFF3686at 282.026 kb on - strand, within GFF3686at 282.026 kb on - strand, within GFF3686at 282.026 kb on - strand, within GFF3686at 282.026 kb on - strand, within GFF3686at 282.026 kb on - strand, within GFF3686at 282.040 kb on + strand, within GFF3686at 282.040 kb on + strand, within GFF3686at 282.041 kb on - strand, within GFF3686at 282.041 kb on - strand, within GFF3686at 282.202 kb on + strand, within GFF3686at 282.202 kb on + strand, within GFF3686at 282.265 kb on + strand, within GFF3686at 282.266 kb on - strand, within GFF3686at 282.294 kb on + strand, within GFF3686at 282.294 kb on + strand, within GFF3686at 282.295 kb on - strand, within GFF3686at 282.427 kb on + strand, within GFF3686at 282.427 kb on + strand, within GFF3686at 282.428 kb on - strand, within GFF3686at 282.430 kb on - strand, within GFF3686at 282.470 kb on - strand, within GFF3686at 282.514 kb on + strandat 282.587 kb on - strandat 282.587 kb on - strandat 282.644 kb on - strandat 282.708 kb on + strandat 282.709 kb on - strandat 282.749 kb on + strandat 282.768 kb on + strandat 282.863 kb on + strandat 282.863 kb on + strandat 282.863 kb on + strandat 282.863 kb on + strandat 282.984 kb on + strandat 282.984 kb on + strandat 282.984 kb on + strandat 282.985 kb on - strandat 282.985 kb on - strandat 283.108 kb on - strandat 283.108 kb on - strandat 283.108 kb on - strandat 283.160 kb on + strandat 283.160 kb on + strandat 283.161 kb on - strandat 283.161 kb on - strandat 283.210 kb on + strandat 283.225 kb on + strandat 283.560 kb on - strand, within GFF3687at 283.560 kb on - strand, within GFF3687at 283.560 kb on - strand, within GFF3687at 284.034 kb on + strand, within GFF3687at 284.034 kb on + strand, within GFF3687at 284.035 kb on - strand, within GFF3687at 284.035 kb on - strand, within GFF3687at 284.508 kb on + strand, within GFF3687at 284.509 kb on - strand, within GFF3687at 284.538 kb on + strand, within GFF3687at 284.709 kb on + strand, within GFF3687at 284.709 kb on + strand, within GFF3687at 284.710 kb on - strand, within GFF3687at 284.710 kb on - strand, within GFF3687at 284.710 kb on - strand, within GFF3687at 284.710 kb on - strand, within GFF3687at 284.710 kb on - strand, within GFF3687at 284.809 kb on - strand, within GFF3687at 285.441 kb on + strand, within GFF3687at 285.441 kb on + strand, within GFF3687at 285.555 kb on + strand, within GFF3687at 285.555 kb on + strand, within GFF3687at 285.556 kb on - strand, within GFF3687at 285.575 kb on + strand, within GFF3687at 285.575 kb on + strand, within GFF3687at 285.575 kb on + strand, within GFF3687at 285.576 kb on - strand, within GFF3687at 285.576 kb on - strand, within GFF3687at 285.612 kb on + strand, within GFF3687at 285.657 kb on + strand, within GFF3687at 285.828 kb on + strand, within GFF3687at 285.829 kb on - strand, within GFF3687at 285.829 kb on - strand, within GFF3687at 285.829 kb on - strand, within GFF3687at 285.942 kb on + strand, within GFF3687at 285.943 kb on - strand, within GFF3687at 285.943 kb on - strand, within GFF3687at 286.069 kb on - strand, within GFF3687at 286.069 kb on - strand, within GFF3687at 286.069 kb on - strand, within GFF3687at 286.069 kb on - strand, within GFF3687at 286.126 kb on - strand, within GFF3687at 286.288 kb on - strandat 286.459 kb on - strandat 286.482 kb on + strandat 286.483 kb on - strandat 286.524 kb on + strandat 286.524 kb on + strandat 286.525 kb on - strandat 286.811 kb on + strandat 286.812 kb on - strandat 286.812 kb on - strandat 286.866 kb on + strandat 286.928 kb on + strandat 286.929 kb on - strandat 286.929 kb on - strandat 287.030 kb on + strandat 287.031 kb on - strandat 287.031 kb on - strandat 287.031 kb on - strandat 287.031 kb on - strandat 287.252 kb on + strandat 287.252 kb on + strandat 287.252 kb on + strandat 287.252 kb on + strandat 287.252 kb on + strandat 287.253 kb on - strandat 287.253 kb on - strandat 287.258 kb on + strandat 287.532 kb on + strand, within GFF3688at 287.532 kb on + strand, within GFF3688at 287.533 kb on - strand, within GFF3688at 287.534 kb on + strand, within GFF3688at 287.534 kb on + strand, within GFF3688at 287.534 kb on + strand, within GFF3688at 287.534 kb on + strand, within GFF3688at 287.534 kb on + strand, within GFF3688at 287.534 kb on + strand, within GFF3688at 287.534 kb on + strand, within GFF3688at 287.535 kb on - strand, within GFF3688at 287.535 kb on - strand, within GFF3688at 287.535 kb on - strand, within GFF3688at 287.535 kb on - strand, within GFF3688at 287.535 kb on - strand, within GFF3688at 287.535 kb on - strand, within GFF3688at 287.545 kb on + strand, within GFF3688at 287.545 kb on + strand, within GFF3688at 287.545 kb on + strand, within GFF3688at 287.545 kb on + strand, within GFF3688at 287.545 kb on + strand, within GFF3688at 287.545 kb on + strand, within GFF3688at 287.545 kb on + strand, within GFF3688at 287.545 kb on + strand, within GFF3688at 287.545 kb on + strand, within GFF3688at 287.545 kb on + strand, within GFF3688at 287.545 kb on + strand, within GFF3688at 287.546 kb on - strand, within GFF3688at 287.546 kb on - strand, within GFF3688at 287.546 kb on - strand, within GFF3688at 287.546 kb on - strand, within GFF3688at 287.546 kb on - strand, within GFF3688

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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281,902 + GFF3686 0.64 -0.2
281,905 + GFF3686 0.64 -0.2
281,905 + GFF3686 0.64 +0.6
281,905 + GFF3686 0.64 -0.3
281,905 + GFF3686 0.64 -0.0
281,905 + GFF3686 0.64 +0.7
281,906 - GFF3686 0.64 +0.3
281,906 - GFF3686 0.64 +1.4
281,906 - GFF3686 0.64 -0.0
281,906 - GFF3686 0.64 +0.0
281,906 - GFF3686 0.64 +0.1
281,906 - GFF3686 0.64 -0.6
281,906 - GFF3686 0.64 -1.2
281,906 - GFF3686 0.64 -0.5
281,906 - GFF3686 0.64 -0.7
281,999 - GFF3686 0.68 -0.9
282,025 + GFF3686 0.69 -0.6
282,026 - GFF3686 0.69 -1.1
282,026 - GFF3686 0.69 -1.2
282,026 - GFF3686 0.69 +0.4
282,026 - GFF3686 0.69 +0.6
282,026 - GFF3686 0.69 -0.2
282,040 + GFF3686 0.70 -0.5
282,040 + GFF3686 0.70 -0.4
282,041 - GFF3686 0.70 +0.6
282,041 - GFF3686 0.70 -0.7
282,202 + GFF3686 0.77 +0.4
282,202 + GFF3686 0.77 -0.1
282,265 + GFF3686 0.80 +0.1
282,266 - GFF3686 0.80 -0.1
282,294 + GFF3686 0.81 -0.6
282,294 + GFF3686 0.81 +0.4
282,295 - GFF3686 0.81 -0.2
282,427 + GFF3686 0.87 -0.6
282,427 + GFF3686 0.87 -0.7
282,428 - GFF3686 0.87 -0.5
282,430 - GFF3686 0.87 -0.7
282,470 - GFF3686 0.89 +0.3
282,514 + +0.3
282,587 - -0.4
282,587 - +1.0
282,644 - +1.4
282,708 + -0.4
282,709 - +0.1
282,749 + -1.9
282,768 + -0.5
282,863 + -0.4
282,863 + -0.2
282,863 + -0.1
282,863 + +1.4
282,984 + -1.1
282,984 + +0.7
282,984 + +1.0
282,985 - -1.2
282,985 - -2.2
283,108 - -1.1
283,108 - -0.9
283,108 - +0.3
283,160 + +0.4
283,160 + -0.6
283,161 - -0.4
283,161 - +0.2
283,210 + -0.0
283,225 + -0.8
283,560 - GFF3687 0.18 -0.7
283,560 - GFF3687 0.18 -0.8
283,560 - GFF3687 0.18 +0.2
284,034 + GFF3687 0.31 -0.4
284,034 + GFF3687 0.31 +0.4
284,035 - GFF3687 0.31 -0.2
284,035 - GFF3687 0.31 -2.8
284,508 + GFF3687 0.44 -0.8
284,509 - GFF3687 0.44 +0.5
284,538 + GFF3687 0.44 -0.3
284,709 + GFF3687 0.49 -1.2
284,709 + GFF3687 0.49 -0.1
284,710 - GFF3687 0.49 -1.8
284,710 - GFF3687 0.49 +0.9
284,710 - GFF3687 0.49 +0.4
284,710 - GFF3687 0.49 -0.6
284,710 - GFF3687 0.49 -0.9
284,809 - GFF3687 0.52 -0.9
285,441 + GFF3687 0.69 -0.9
285,441 + GFF3687 0.69 -0.2
285,555 + GFF3687 0.72 +0.2
285,555 + GFF3687 0.72 -0.4
285,556 - GFF3687 0.72 -1.5
285,575 + GFF3687 0.72 -1.3
285,575 + GFF3687 0.72 -1.5
285,575 + GFF3687 0.72 -0.6
285,576 - GFF3687 0.72 -0.5
285,576 - GFF3687 0.72 -0.3
285,612 + GFF3687 0.73 -1.2
285,657 + GFF3687 0.75 -1.1
285,828 + GFF3687 0.79 -0.7
285,829 - GFF3687 0.79 -0.6
285,829 - GFF3687 0.79 -0.1
285,829 - GFF3687 0.79 +0.1
285,942 + GFF3687 0.82 -1.2
285,943 - GFF3687 0.82 -0.4
285,943 - GFF3687 0.82 -1.0
286,069 - GFF3687 0.86 -1.1
286,069 - GFF3687 0.86 -0.6
286,069 - GFF3687 0.86 +1.0
286,069 - GFF3687 0.86 -0.1
286,126 - GFF3687 0.87 +0.5
286,288 - -1.4
286,459 - -0.9
286,482 + -1.2
286,483 - -0.6
286,524 + +0.4
286,524 + -0.2
286,525 - -1.8
286,811 + -0.2
286,812 - -0.9
286,812 - -0.1
286,866 + -0.6
286,928 + +0.1
286,929 - -0.4
286,929 - -1.3
287,030 + -0.5
287,031 - -0.2
287,031 - +0.1
287,031 - -0.9
287,031 - +0.9
287,252 + -0.9
287,252 + -0.2
287,252 + +0.3
287,252 + +0.4
287,252 + -0.9
287,253 - -1.0
287,253 - +0.1
287,258 + -1.0
287,532 + GFF3688 0.12 -1.4
287,532 + GFF3688 0.12 +0.0
287,533 - GFF3688 0.12 +0.8
287,534 + GFF3688 0.12 -0.9
287,534 + GFF3688 0.12 -0.7
287,534 + GFF3688 0.12 +0.1
287,534 + GFF3688 0.12 +1.4
287,534 + GFF3688 0.12 -0.9
287,534 + GFF3688 0.12 -0.3
287,534 + GFF3688 0.12 -1.1
287,535 - GFF3688 0.12 -0.4
287,535 - GFF3688 0.12 -1.6
287,535 - GFF3688 0.12 -0.5
287,535 - GFF3688 0.12 +0.9
287,535 - GFF3688 0.12 -0.6
287,535 - GFF3688 0.12 +0.3
287,545 + GFF3688 0.12 -1.0
287,545 + GFF3688 0.12 -0.0
287,545 + GFF3688 0.12 -0.0
287,545 + GFF3688 0.12 +0.7
287,545 + GFF3688 0.12 -0.7
287,545 + GFF3688 0.12 -2.0
287,545 + GFF3688 0.12 -0.1
287,545 + GFF3688 0.12 -0.2
287,545 + GFF3688 0.12 -0.7
287,545 + GFF3688 0.12 +0.1
287,545 + GFF3688 0.12 +0.4
287,546 - GFF3688 0.12 -0.6
287,546 - GFF3688 0.12 -1.1
287,546 - GFF3688 0.12 -0.3
287,546 - GFF3688 0.12 -0.4
287,546 - GFF3688 0.12 +0.1

Or see this region's nucleotide sequence