Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF363 and GFF364 are separated by 9 nucleotides GFF364 and GFF365 are separated by 477 nucleotides GFF365 and GFF366 are separated by 314 nucleotides GFF366 and GFF367 are separated by 9 nucleotides
GFF363 - Adenylate cyclase, at 401,899 to 404,742
GFF363
GFF364 - Regulator of nucleoside diphosphate kinase, at 404,752 to 405,171
GFF364
GFF365 - Iron-sulfur cluster assembly protein CyaY, at 405,649 to 405,981
GFF365
GFF366 - hypothetical protein, at 406,296 to 406,466
GFF366
GFF367 - Diaminopimelate decarboxylase, at 406,476 to 407,723
GFF367
Position (kb) 405
406 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 404.683 kb on + strand at 404.683 kb on + strand at 404.754 kb on - strand at 404.951 kb on + strand, within GFF364 at 404.951 kb on + strand, within GFF364 at 404.951 kb on + strand, within GFF364 at 404.951 kb on + strand, within GFF364 at 404.952 kb on - strand, within GFF364 at 405.273 kb on - strand at 405.290 kb on - strand at 405.292 kb on - strand at 405.341 kb on + strand at 405.342 kb on - strand at 405.371 kb on - strand at 405.371 kb on - strand at 405.404 kb on + strand at 405.463 kb on + strand at 405.464 kb on - strand at 405.464 kb on - strand at 405.562 kb on + strand at 405.562 kb on + strand at 405.562 kb on + strand at 405.562 kb on + strand at 405.563 kb on - strand at 405.563 kb on - strand at 405.605 kb on + strand at 405.606 kb on - strand at 405.916 kb on + strand, within GFF365 at 405.916 kb on + strand, within GFF365 at 405.916 kb on + strand, within GFF365 at 405.916 kb on + strand, within GFF365 at 405.916 kb on + strand, within GFF365 at 405.917 kb on - strand, within GFF365 at 405.917 kb on - strand, within GFF365 at 406.028 kb on - strand at 406.056 kb on + strand at 406.233 kb on + strand at 406.257 kb on - strand at 406.461 kb on + strand at 406.464 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 404,683 + +0.6 404,683 + -0.3 404,754 - +0.8 404,951 + GFF364 0.47 -0.2 404,951 + GFF364 0.47 +0.5 404,951 + GFF364 0.47 +0.4 404,951 + GFF364 0.47 +0.5 404,952 - GFF364 0.48 -0.5 405,273 - +0.3 405,290 - +0.3 405,292 - -0.1 405,341 + -0.4 405,342 - -1.3 405,371 - +1.4 405,371 - +0.1 405,404 + +1.4 405,463 + -0.4 405,464 - -0.2 405,464 - +0.2 405,562 + -0.4 405,562 + -0.7 405,562 + +0.3 405,562 + -1.2 405,563 - -0.7 405,563 - -0.5 405,605 + +0.5 405,606 - -0.5 405,916 + GFF365 0.80 -0.7 405,916 + GFF365 0.80 -0.7 405,916 + GFF365 0.80 -0.5 405,916 + GFF365 0.80 -0.2 405,916 + GFF365 0.80 -1.5 405,917 - GFF365 0.80 +0.8 405,917 - GFF365 0.80 +0.7 406,028 - -0.5 406,056 + +0.6 406,233 + -0.2 406,257 - -0.5 406,461 + -0.3 406,464 + -3.1
Or see this region's nucleotide sequence