Strain Fitness in Pseudomonas sp. DMC3 around GFF3638

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3637 and GFF3638 are separated by 34 nucleotidesGFF3638 and GFF3639 are separated by 46 nucleotides GFF3637 - 2-hydroxy-3-oxopropionate reductase, at 223,314 to 224,165 GFF3637 GFF3638 - hypothetical protein, at 224,200 to 224,532 GFF3638 GFF3639 - hypothetical protein, at 224,579 to 225,232 GFF3639 Position (kb) 224 225Strain fitness (log2 ratio) -2 -1 0 1 2at 223.209 kb on - strandat 223.268 kb on + strandat 223.269 kb on - strandat 223.269 kb on - strandat 223.269 kb on - strandat 223.269 kb on - strandat 223.295 kb on + strandat 223.480 kb on + strand, within GFF3637at 223.481 kb on - strand, within GFF3637at 223.481 kb on - strand, within GFF3637at 223.481 kb on - strand, within GFF3637at 223.776 kb on + strand, within GFF3637at 223.777 kb on - strand, within GFF3637at 223.947 kb on + strand, within GFF3637at 223.947 kb on + strand, within GFF3637at 223.947 kb on + strand, within GFF3637at 223.947 kb on + strand, within GFF3637at 223.947 kb on + strand, within GFF3637at 223.948 kb on - strand, within GFF3637at 223.957 kb on - strand, within GFF3637at 224.021 kb on + strand, within GFF3637at 224.256 kb on + strand, within GFF3638at 224.374 kb on + strand, within GFF3638at 224.375 kb on - strand, within GFF3638at 224.512 kb on - strandat 224.546 kb on + strandat 224.622 kb on + strandat 224.628 kb on - strandat 224.633 kb on + strandat 224.634 kb on - strandat 224.634 kb on - strandat 224.634 kb on - strandat 224.646 kb on - strand, within GFF3639at 224.747 kb on + strand, within GFF3639at 224.748 kb on - strand, within GFF3639at 224.748 kb on - strand, within GFF3639at 224.748 kb on - strand, within GFF3639at 224.790 kb on + strand, within GFF3639at 224.790 kb on + strand, within GFF3639at 224.790 kb on + strand, within GFF3639at 224.791 kb on - strand, within GFF3639at 224.867 kb on - strand, within GFF3639at 224.978 kb on + strand, within GFF3639at 224.978 kb on + strand, within GFF3639at 224.979 kb on - strand, within GFF3639at 225.005 kb on + strand, within GFF3639at 225.005 kb on + strand, within GFF3639at 225.005 kb on + strand, within GFF3639at 225.005 kb on + strand, within GFF3639at 225.006 kb on - strand, within GFF3639at 225.006 kb on - strand, within GFF3639at 225.006 kb on - strand, within GFF3639at 225.007 kb on + strand, within GFF3639at 225.007 kb on + strand, within GFF3639at 225.007 kb on + strand, within GFF3639at 225.007 kb on + strand, within GFF3639at 225.008 kb on - strand, within GFF3639at 225.045 kb on + strand, within GFF3639at 225.104 kb on + strand, within GFF3639at 225.117 kb on - strand, within GFF3639at 225.117 kb on - strand, within GFF3639at 225.117 kb on - strand, within GFF3639at 225.117 kb on - strand, within GFF3639at 225.120 kb on + strand, within GFF3639at 225.121 kb on - strand, within GFF3639at 225.166 kb on + strand, within GFF3639at 225.178 kb on + strandat 225.202 kb on + strandat 225.202 kb on + strandat 225.202 kb on + strandat 225.203 kb on - strandat 225.204 kb on + strandat 225.204 kb on + strandat 225.204 kb on + strandat 225.244 kb on - strandat 225.325 kb on + strandat 225.325 kb on + strandat 225.326 kb on - strandat 225.326 kb on - strandat 225.326 kb on - strandat 225.326 kb on - strandat 225.329 kb on + strandat 225.329 kb on + strandat 225.329 kb on + strandat 225.330 kb on - strandat 225.380 kb on + strandat 225.381 kb on - strandat 225.381 kb on - strandat 225.383 kb on + strandat 225.383 kb on + strandat 225.383 kb on + strandat 225.384 kb on - strandat 225.427 kb on + strandat 225.428 kb on - strandat 225.446 kb on - strandat 225.510 kb on + strandat 225.510 kb on + strandat 225.525 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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223,209 - -0.5
223,268 + -0.4
223,269 - -0.1
223,269 - -0.5
223,269 - +0.1
223,269 - -0.6
223,295 + +0.4
223,480 + GFF3637 0.19 +0.4
223,481 - GFF3637 0.20 -0.8
223,481 - GFF3637 0.20 -1.2
223,481 - GFF3637 0.20 -0.2
223,776 + GFF3637 0.54 +0.3
223,777 - GFF3637 0.54 -0.9
223,947 + GFF3637 0.74 +0.6
223,947 + GFF3637 0.74 +0.4
223,947 + GFF3637 0.74 -1.3
223,947 + GFF3637 0.74 +0.7
223,947 + GFF3637 0.74 -1.4
223,948 - GFF3637 0.74 -0.6
223,957 - GFF3637 0.75 +0.7
224,021 + GFF3637 0.83 +1.0
224,256 + GFF3638 0.17 -0.8
224,374 + GFF3638 0.52 -1.1
224,375 - GFF3638 0.53 -0.6
224,512 - -0.3
224,546 + +0.7
224,622 + -0.3
224,628 - +0.2
224,633 + -1.1
224,634 - +0.6
224,634 - -1.0
224,634 - -0.5
224,646 - GFF3639 0.10 -1.1
224,747 + GFF3639 0.26 +0.3
224,748 - GFF3639 0.26 +1.0
224,748 - GFF3639 0.26 -0.0
224,748 - GFF3639 0.26 -0.6
224,790 + GFF3639 0.32 +1.7
224,790 + GFF3639 0.32 +0.2
224,790 + GFF3639 0.32 +1.6
224,791 - GFF3639 0.32 +0.1
224,867 - GFF3639 0.44 +0.4
224,978 + GFF3639 0.61 +0.3
224,978 + GFF3639 0.61 -0.4
224,979 - GFF3639 0.61 +0.4
225,005 + GFF3639 0.65 +0.1
225,005 + GFF3639 0.65 +0.4
225,005 + GFF3639 0.65 -0.9
225,005 + GFF3639 0.65 +0.4
225,006 - GFF3639 0.65 -0.3
225,006 - GFF3639 0.65 -0.1
225,006 - GFF3639 0.65 -0.0
225,007 + GFF3639 0.65 -0.6
225,007 + GFF3639 0.65 -0.4
225,007 + GFF3639 0.65 -0.3
225,007 + GFF3639 0.65 +0.4
225,008 - GFF3639 0.66 +0.2
225,045 + GFF3639 0.71 +0.0
225,104 + GFF3639 0.80 -0.3
225,117 - GFF3639 0.82 +0.7
225,117 - GFF3639 0.82 -0.4
225,117 - GFF3639 0.82 +0.2
225,117 - GFF3639 0.82 -0.6
225,120 + GFF3639 0.83 +0.2
225,121 - GFF3639 0.83 +2.0
225,166 + GFF3639 0.90 -1.2
225,178 + -0.8
225,202 + +0.3
225,202 + -0.6
225,202 + -1.0
225,203 - -0.6
225,204 + -2.3
225,204 + -0.9
225,204 + -0.5
225,244 - +0.7
225,325 + -1.4
225,325 + +1.2
225,326 - +1.7
225,326 - -0.7
225,326 - -0.2
225,326 - +0.3
225,329 + +0.2
225,329 + -0.1
225,329 + -0.6
225,330 - +0.2
225,380 + +0.2
225,381 - -0.7
225,381 - -0.2
225,383 + +1.2
225,383 + -0.4
225,383 + +0.5
225,384 - -0.4
225,427 + -0.2
225,428 - +0.1
225,446 - +0.2
225,510 + +0.6
225,510 + -0.7
225,525 + -0.0

Or see this region's nucleotide sequence