Strain Fitness in Pseudomonas sp. DMC3 around GFF3473

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3472 and GFF3473 are separated by 1 nucleotidesGFF3473 and GFF3474 are separated by 43 nucleotides GFF3472 - hypothetical protein, at 32,771 to 33,901 GFF3472 GFF3473 - hypothetical protein, at 33,903 to 36,305 GFF3473 GFF3474 - hypothetical protein, at 36,349 to 37,659 GFF3474 Position (kb) 33 34 35 36 37Strain fitness (log2 ratio) -2 -1 0 1 2at 33.143 kb on + strand, within GFF3472at 33.163 kb on + strand, within GFF3472at 33.176 kb on + strand, within GFF3472at 33.176 kb on + strand, within GFF3472at 33.177 kb on - strand, within GFF3472at 33.177 kb on - strand, within GFF3472at 33.192 kb on - strand, within GFF3472at 33.192 kb on - strand, within GFF3472at 33.192 kb on - strand, within GFF3472at 33.275 kb on + strand, within GFF3472at 33.287 kb on - strand, within GFF3472at 33.287 kb on - strand, within GFF3472at 33.315 kb on + strand, within GFF3472at 33.315 kb on + strand, within GFF3472at 33.521 kb on + strand, within GFF3472at 33.602 kb on + strand, within GFF3472at 33.602 kb on + strand, within GFF3472at 33.603 kb on - strand, within GFF3472at 33.603 kb on - strand, within GFF3472at 33.603 kb on - strand, within GFF3472at 33.641 kb on + strand, within GFF3472at 33.641 kb on + strand, within GFF3472at 33.725 kb on + strand, within GFF3472at 33.725 kb on + strand, within GFF3472at 33.725 kb on + strand, within GFF3472at 33.725 kb on + strand, within GFF3472at 33.725 kb on + strand, within GFF3472at 33.725 kb on + strand, within GFF3472at 33.725 kb on + strand, within GFF3472at 33.725 kb on + strand, within GFF3472at 33.726 kb on - strand, within GFF3472at 33.885 kb on + strandat 33.885 kb on + strandat 33.902 kb on + strandat 33.902 kb on + strandat 33.902 kb on + strandat 33.902 kb on + strandat 33.902 kb on + strandat 33.902 kb on + strandat 33.902 kb on + strandat 33.902 kb on + strandat 33.902 kb on + strandat 33.902 kb on + strandat 33.902 kb on + strandat 33.903 kb on - strandat 33.903 kb on - strandat 33.903 kb on - strandat 33.903 kb on - strandat 33.903 kb on - strandat 33.903 kb on - strandat 33.906 kb on + strandat 33.906 kb on + strandat 33.906 kb on + strandat 33.907 kb on - strandat 33.907 kb on - strandat 33.907 kb on - strandat 33.907 kb on - strandat 33.907 kb on - strandat 33.936 kb on + strandat 33.936 kb on + strandat 33.937 kb on - strandat 33.937 kb on - strandat 33.938 kb on + strandat 33.938 kb on + strandat 33.939 kb on - strandat 33.939 kb on - strandat 33.939 kb on - strandat 34.131 kb on + strandat 34.132 kb on - strandat 34.132 kb on - strandat 34.132 kb on - strandat 34.231 kb on + strand, within GFF3473at 34.232 kb on - strand, within GFF3473at 34.560 kb on + strand, within GFF3473at 34.561 kb on - strand, within GFF3473at 34.561 kb on - strand, within GFF3473at 34.580 kb on + strand, within GFF3473at 34.581 kb on - strand, within GFF3473at 34.754 kb on - strand, within GFF3473at 34.915 kb on + strand, within GFF3473at 34.915 kb on + strand, within GFF3473at 34.915 kb on + strand, within GFF3473at 34.915 kb on + strand, within GFF3473at 34.916 kb on - strand, within GFF3473at 34.916 kb on - strand, within GFF3473at 34.916 kb on - strand, within GFF3473at 34.916 kb on - strand, within GFF3473at 35.025 kb on - strand, within GFF3473at 35.025 kb on - strand, within GFF3473at 35.025 kb on - strand, within GFF3473at 35.115 kb on + strand, within GFF3473at 35.116 kb on - strand, within GFF3473at 35.116 kb on - strand, within GFF3473at 35.325 kb on + strand, within GFF3473at 35.325 kb on + strand, within GFF3473at 35.325 kb on + strand, within GFF3473at 35.327 kb on + strand, within GFF3473at 35.327 kb on + strand, within GFF3473at 35.327 kb on + strand, within GFF3473at 35.327 kb on + strand, within GFF3473at 35.327 kb on + strand, within GFF3473at 35.327 kb on + strand, within GFF3473at 35.327 kb on + strand, within GFF3473at 35.327 kb on + strand, within GFF3473at 35.327 kb on + strand, within GFF3473at 35.327 kb on + strand, within GFF3473at 35.327 kb on + strand, within GFF3473at 35.327 kb on + strand, within GFF3473at 35.327 kb on + strand, within GFF3473at 35.327 kb on + strand, within GFF3473at 35.328 kb on - strand, within GFF3473at 35.328 kb on - strand, within GFF3473at 35.328 kb on - strand, within GFF3473at 35.328 kb on - strand, within GFF3473at 35.328 kb on - strand, within GFF3473at 35.328 kb on - strand, within GFF3473at 35.452 kb on + strand, within GFF3473at 35.577 kb on - strand, within GFF3473at 35.631 kb on + strand, within GFF3473at 35.631 kb on + strand, within GFF3473at 35.926 kb on - strand, within GFF3473at 36.407 kb on - strandat 36.409 kb on + strandat 36.409 kb on + strandat 36.410 kb on - strandat 36.443 kb on + strandat 36.443 kb on + strandat 36.443 kb on + strandat 36.467 kb on + strandat 36.467 kb on + strandat 36.467 kb on + strandat 36.467 kb on + strandat 36.467 kb on + strandat 36.468 kb on - strandat 36.593 kb on + strand, within GFF3474at 36.593 kb on + strand, within GFF3474at 36.593 kb on + strand, within GFF3474at 36.593 kb on + strand, within GFF3474at 36.594 kb on - strand, within GFF3474at 36.594 kb on - strand, within GFF3474at 36.594 kb on - strand, within GFF3474at 36.594 kb on - strand, within GFF3474at 36.595 kb on + strand, within GFF3474at 36.596 kb on - strand, within GFF3474at 36.596 kb on - strand, within GFF3474at 36.703 kb on + strand, within GFF3474at 36.754 kb on - strand, within GFF3474at 36.783 kb on - strand, within GFF3474at 36.910 kb on - strand, within GFF3474at 37.023 kb on + strand, within GFF3474at 37.082 kb on + strand, within GFF3474at 37.082 kb on + strand, within GFF3474at 37.082 kb on + strand, within GFF3474at 37.082 kb on + strand, within GFF3474at 37.082 kb on + strand, within GFF3474at 37.082 kb on + strand, within GFF3474at 37.152 kb on - strand, within GFF3474at 37.152 kb on - strand, within GFF3474at 37.152 kb on - strand, within GFF3474at 37.152 kb on - strand, within GFF3474

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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33,143 + GFF3472 0.33 +0.3
33,163 + GFF3472 0.35 -0.8
33,176 + GFF3472 0.36 -0.5
33,176 + GFF3472 0.36 +0.4
33,177 - GFF3472 0.36 +0.6
33,177 - GFF3472 0.36 +0.1
33,192 - GFF3472 0.37 +1.0
33,192 - GFF3472 0.37 -1.0
33,192 - GFF3472 0.37 -0.7
33,275 + GFF3472 0.45 -1.3
33,287 - GFF3472 0.46 +0.8
33,287 - GFF3472 0.46 +0.4
33,315 + GFF3472 0.48 +0.7
33,315 + GFF3472 0.48 +1.2
33,521 + GFF3472 0.66 -1.1
33,602 + GFF3472 0.73 +0.8
33,602 + GFF3472 0.73 -0.3
33,603 - GFF3472 0.74 -0.1
33,603 - GFF3472 0.74 -0.5
33,603 - GFF3472 0.74 -0.2
33,641 + GFF3472 0.77 -0.7
33,641 + GFF3472 0.77 +0.2
33,725 + GFF3472 0.84 -0.2
33,725 + GFF3472 0.84 -0.4
33,725 + GFF3472 0.84 +0.1
33,725 + GFF3472 0.84 -1.8
33,725 + GFF3472 0.84 -1.1
33,725 + GFF3472 0.84 -0.6
33,725 + GFF3472 0.84 -0.2
33,725 + GFF3472 0.84 +0.7
33,726 - GFF3472 0.84 -0.3
33,885 + +0.1
33,885 + -0.1
33,902 + -0.2
33,902 + -0.6
33,902 + +0.8
33,902 + +0.1
33,902 + +0.4
33,902 + +0.3
33,902 + -0.1
33,902 + -0.4
33,902 + -0.7
33,902 + +0.6
33,902 + -0.5
33,903 - -0.6
33,903 - -0.1
33,903 - -0.9
33,903 - +0.7
33,903 - -0.6
33,903 - -0.3
33,906 + +0.5
33,906 + +0.3
33,906 + +0.3
33,907 - -0.9
33,907 - -0.9
33,907 - -1.4
33,907 - -1.6
33,907 - +0.1
33,936 + -0.5
33,936 + +0.6
33,937 - -0.1
33,937 - -0.3
33,938 + -0.6
33,938 + -0.4
33,939 - -0.8
33,939 - -0.6
33,939 - -0.2
34,131 + -1.0
34,132 - +0.8
34,132 - +0.6
34,132 - -0.2
34,231 + GFF3473 0.14 -2.0
34,232 - GFF3473 0.14 +0.5
34,560 + GFF3473 0.27 -0.3
34,561 - GFF3473 0.27 +0.1
34,561 - GFF3473 0.27 +0.2
34,580 + GFF3473 0.28 +0.1
34,581 - GFF3473 0.28 +1.1
34,754 - GFF3473 0.35 +0.8
34,915 + GFF3473 0.42 +0.5
34,915 + GFF3473 0.42 -1.6
34,915 + GFF3473 0.42 -0.7
34,915 + GFF3473 0.42 -0.3
34,916 - GFF3473 0.42 -0.6
34,916 - GFF3473 0.42 +0.6
34,916 - GFF3473 0.42 -0.4
34,916 - GFF3473 0.42 +0.6
35,025 - GFF3473 0.47 -0.3
35,025 - GFF3473 0.47 +0.6
35,025 - GFF3473 0.47 -1.0
35,115 + GFF3473 0.50 -0.9
35,116 - GFF3473 0.50 +0.1
35,116 - GFF3473 0.50 -0.0
35,325 + GFF3473 0.59 -1.2
35,325 + GFF3473 0.59 +0.7
35,325 + GFF3473 0.59 -0.6
35,327 + GFF3473 0.59 -1.3
35,327 + GFF3473 0.59 +0.4
35,327 + GFF3473 0.59 +0.6
35,327 + GFF3473 0.59 -0.0
35,327 + GFF3473 0.59 -0.2
35,327 + GFF3473 0.59 -0.1
35,327 + GFF3473 0.59 -0.2
35,327 + GFF3473 0.59 -0.2
35,327 + GFF3473 0.59 -0.2
35,327 + GFF3473 0.59 -0.9
35,327 + GFF3473 0.59 +0.1
35,327 + GFF3473 0.59 -0.9
35,327 + GFF3473 0.59 -0.9
35,327 + GFF3473 0.59 -1.1
35,328 - GFF3473 0.59 +0.4
35,328 - GFF3473 0.59 -1.7
35,328 - GFF3473 0.59 +1.8
35,328 - GFF3473 0.59 -0.4
35,328 - GFF3473 0.59 -0.2
35,328 - GFF3473 0.59 -0.6
35,452 + GFF3473 0.64 +0.7
35,577 - GFF3473 0.70 -1.2
35,631 + GFF3473 0.72 -0.1
35,631 + GFF3473 0.72 +0.2
35,926 - GFF3473 0.84 +0.3
36,407 - -0.4
36,409 + +0.2
36,409 + -0.9
36,410 - -1.9
36,443 + -0.3
36,443 + -0.6
36,443 + +0.3
36,467 + -0.0
36,467 + +0.8
36,467 + -0.2
36,467 + -1.5
36,467 + -2.3
36,468 - +0.4
36,593 + GFF3474 0.19 -0.3
36,593 + GFF3474 0.19 -0.5
36,593 + GFF3474 0.19 -0.3
36,593 + GFF3474 0.19 -0.2
36,594 - GFF3474 0.19 +0.5
36,594 - GFF3474 0.19 -0.4
36,594 - GFF3474 0.19 +0.2
36,594 - GFF3474 0.19 -1.6
36,595 + GFF3474 0.19 +0.5
36,596 - GFF3474 0.19 -0.9
36,596 - GFF3474 0.19 +0.8
36,703 + GFF3474 0.27 -0.2
36,754 - GFF3474 0.31 +0.6
36,783 - GFF3474 0.33 +0.6
36,910 - GFF3474 0.43 +0.3
37,023 + GFF3474 0.51 -0.2
37,082 + GFF3474 0.56 -0.6
37,082 + GFF3474 0.56 -0.1
37,082 + GFF3474 0.56 -0.7
37,082 + GFF3474 0.56 +0.0
37,082 + GFF3474 0.56 -1.5
37,082 + GFF3474 0.56 +1.8
37,152 - GFF3474 0.61 +0.1
37,152 - GFF3474 0.61 +0.4
37,152 - GFF3474 0.61 +1.0
37,152 - GFF3474 0.61 -0.2

Or see this region's nucleotide sequence