Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3461 and GFF3462 are separated by 6 nucleotides GFF3462 and GFF3463 are separated by 154 nucleotides GFF3463 and GFF3464 are separated by 60 nucleotides GFF3464 and GFF3465 are separated by 230 nucleotides
GFF3461 - Nodulation protein D 2, at 18,674 to 19,579
GFF3461
GFF3462 - hypothetical protein, at 19,586 to 19,840
GFF3462
GFF3463 - hypothetical protein, at 19,995 to 20,312
GFF3463
GFF3464 - Delta(1)-pyrroline-2-carboxylate/Delta(1)-piperid eine-2-carboxylate reductase, at 20,373 to 21,401
GFF3464
GFF3465 - hypothetical protein, at 21,632 to 26,476
GFF3465
Position (kb) 20
21
22 Strain fitness (log2 ratio) -2
-1
0
1 at 19.477 kb on - strand, within GFF3461 at 19.587 kb on + strand at 19.588 kb on - strand at 19.588 kb on - strand at 19.849 kb on - strand at 19.876 kb on + strand at 19.876 kb on + strand at 19.877 kb on - strand at 19.877 kb on - strand at 19.950 kb on + strand at 20.229 kb on + strand, within GFF3463 at 20.229 kb on + strand, within GFF3463 at 20.229 kb on + strand, within GFF3463 at 20.229 kb on + strand, within GFF3463 at 20.229 kb on + strand, within GFF3463 at 20.229 kb on + strand, within GFF3463 at 20.230 kb on - strand, within GFF3463 at 20.230 kb on - strand, within GFF3463 at 20.230 kb on - strand, within GFF3463 at 20.230 kb on - strand, within GFF3463 at 20.230 kb on - strand, within GFF3463 at 20.230 kb on - strand, within GFF3463 at 20.357 kb on + strand at 20.357 kb on + strand at 20.358 kb on - strand at 20.437 kb on - strand at 21.220 kb on + strand, within GFF3464 at 21.220 kb on + strand, within GFF3464 at 21.221 kb on - strand, within GFF3464 at 21.221 kb on - strand, within GFF3464 at 21.421 kb on - strand at 21.421 kb on - strand at 21.440 kb on + strand at 21.440 kb on + strand at 21.441 kb on - strand at 21.554 kb on + strand at 21.555 kb on - strand at 21.558 kb on + strand at 21.558 kb on + strand at 21.558 kb on + strand at 21.558 kb on + strand at 21.558 kb on + strand at 21.559 kb on - strand at 21.559 kb on - strand at 21.559 kb on - strand at 21.559 kb on - strand at 21.559 kb on - strand at 21.562 kb on + strand at 21.563 kb on - strand at 21.563 kb on - strand at 21.589 kb on + strand at 21.589 kb on + strand at 21.589 kb on + strand at 21.589 kb on + strand at 21.589 kb on + strand at 21.589 kb on + strand at 21.589 kb on + strand at 21.590 kb on - strand at 21.590 kb on - strand at 21.590 kb on - strand at 21.590 kb on - strand at 21.590 kb on - strand at 21.673 kb on - strand at 21.903 kb on - strand at 21.904 kb on + strand at 21.904 kb on + strand at 21.905 kb on - strand at 21.905 kb on - strand at 22.055 kb on - strand at 22.055 kb on - strand at 22.259 kb on + strand, within GFF3465 at 22.373 kb on - strand, within GFF3465 at 22.373 kb on - strand, within GFF3465
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 19,477 - GFF3461 0.89 -2.6 19,587 + -0.7 19,588 - +0.7 19,588 - -0.7 19,849 - +0.1 19,876 + +1.1 19,876 + -0.0 19,877 - +0.7 19,877 - +0.7 19,950 + -0.5 20,229 + GFF3463 0.74 -0.9 20,229 + GFF3463 0.74 -0.1 20,229 + GFF3463 0.74 -0.0 20,229 + GFF3463 0.74 -0.6 20,229 + GFF3463 0.74 +0.2 20,229 + GFF3463 0.74 -1.1 20,230 - GFF3463 0.74 -0.8 20,230 - GFF3463 0.74 -0.4 20,230 - GFF3463 0.74 -0.7 20,230 - GFF3463 0.74 +0.6 20,230 - GFF3463 0.74 -0.6 20,230 - GFF3463 0.74 +0.4 20,357 + +0.5 20,357 + -0.1 20,358 - -0.5 20,437 - +0.4 21,220 + GFF3464 0.82 -2.3 21,220 + GFF3464 0.82 +0.1 21,221 - GFF3464 0.82 -1.2 21,221 - GFF3464 0.82 -1.0 21,421 - -0.0 21,421 - +0.6 21,440 + -2.0 21,440 + -1.1 21,441 - -0.4 21,554 + -0.1 21,555 - -0.8 21,558 + -0.5 21,558 + -0.9 21,558 + -1.4 21,558 + +0.3 21,558 + -0.5 21,559 - +0.4 21,559 - +0.1 21,559 - -0.9 21,559 - -0.7 21,559 - +0.4 21,562 + +1.0 21,563 - +0.4 21,563 - -0.9 21,589 + -1.0 21,589 + +0.9 21,589 + -1.5 21,589 + -0.7 21,589 + -0.1 21,589 + +0.2 21,589 + -1.1 21,590 - +1.4 21,590 - -1.8 21,590 - -1.2 21,590 - +1.1 21,590 - -0.3 21,673 - -0.1 21,903 - +1.7 21,904 + +0.4 21,904 + -1.7 21,905 - -1.0 21,905 - +0.4 22,055 - +0.8 22,055 - +0.4 22,259 + GFF3465 0.13 -0.3 22,373 - GFF3465 0.15 -0.6 22,373 - GFF3465 0.15 -0.5
Or see this region's nucleotide sequence