Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3403 and GFF3404 are separated by 99 nucleotides GFF3404 and GFF3405 are separated by 285 nucleotides GFF3405 and GFF3406 are separated by 148 nucleotides
GFF3403 - hypothetical protein, at 410,193 to 410,588
GFF3403
GFF3404 - hypothetical protein, at 410,688 to 411,083
GFF3404
GFF3405 - hypothetical protein, at 411,369 to 411,578
GFF3405
GFF3406 - Copper resistance protein A, at 411,727 to 413,589
GFF3406
Position (kb) 411
412 Strain fitness (log2 ratio) -2
-1
0
1 at 410.534 kb on + strand, within GFF3403 at 410.535 kb on - strand, within GFF3403 at 410.574 kb on + strand at 410.574 kb on + strand at 410.574 kb on + strand at 410.575 kb on - strand at 410.623 kb on + strand at 410.689 kb on + strand at 410.689 kb on + strand at 410.748 kb on + strand, within GFF3404 at 410.749 kb on - strand, within GFF3404 at 410.865 kb on + strand, within GFF3404 at 410.865 kb on + strand, within GFF3404 at 410.866 kb on - strand, within GFF3404 at 410.866 kb on - strand, within GFF3404 at 410.866 kb on - strand, within GFF3404 at 410.866 kb on - strand, within GFF3404 at 410.866 kb on - strand, within GFF3404 at 410.866 kb on - strand, within GFF3404 at 410.866 kb on - strand, within GFF3404 at 410.866 kb on - strand, within GFF3404 at 410.871 kb on + strand, within GFF3404 at 410.871 kb on + strand, within GFF3404 at 410.871 kb on + strand, within GFF3404 at 410.871 kb on + strand, within GFF3404 at 410.871 kb on + strand, within GFF3404 at 410.871 kb on + strand, within GFF3404 at 410.872 kb on - strand, within GFF3404 at 410.872 kb on - strand, within GFF3404 at 410.872 kb on - strand, within GFF3404 at 410.872 kb on - strand, within GFF3404 at 410.872 kb on - strand, within GFF3404 at 410.872 kb on - strand, within GFF3404 at 410.872 kb on - strand, within GFF3404 at 410.872 kb on - strand, within GFF3404 at 410.963 kb on + strand, within GFF3404 at 410.963 kb on + strand, within GFF3404 at 411.021 kb on + strand, within GFF3404 at 411.022 kb on - strand, within GFF3404 at 411.048 kb on + strand at 411.048 kb on + strand at 411.049 kb on - strand at 411.049 kb on - strand at 411.049 kb on - strand at 411.097 kb on + strand at 411.127 kb on + strand at 411.127 kb on + strand at 411.127 kb on + strand at 411.156 kb on + strand at 411.157 kb on - strand at 411.157 kb on - strand at 411.157 kb on - strand at 411.167 kb on - strand at 411.260 kb on + strand at 411.260 kb on + strand at 411.261 kb on - strand at 411.261 kb on - strand at 411.261 kb on - strand at 411.287 kb on + strand at 411.287 kb on + strand at 411.287 kb on + strand at 411.288 kb on - strand at 411.288 kb on - strand at 411.288 kb on - strand at 411.288 kb on - strand at 411.368 kb on + strand at 411.368 kb on + strand at 411.368 kb on + strand at 411.368 kb on + strand at 411.368 kb on + strand at 411.368 kb on + strand at 411.368 kb on + strand at 411.368 kb on + strand at 411.395 kb on + strand, within GFF3405 at 411.395 kb on + strand, within GFF3405 at 411.395 kb on + strand, within GFF3405 at 411.395 kb on + strand, within GFF3405 at 411.395 kb on + strand, within GFF3405 at 411.396 kb on - strand, within GFF3405 at 411.396 kb on - strand, within GFF3405 at 411.396 kb on - strand, within GFF3405 at 411.410 kb on + strand, within GFF3405 at 411.410 kb on + strand, within GFF3405 at 411.411 kb on - strand, within GFF3405 at 411.411 kb on - strand, within GFF3405 at 411.411 kb on - strand, within GFF3405 at 411.494 kb on + strand, within GFF3405 at 411.600 kb on + strand at 411.600 kb on + strand at 411.600 kb on + strand at 411.600 kb on + strand at 411.600 kb on + strand at 411.601 kb on - strand at 411.601 kb on - strand at 411.601 kb on - strand at 411.601 kb on - strand at 411.616 kb on + strand at 411.617 kb on - strand at 411.617 kb on - strand at 411.617 kb on - strand at 411.617 kb on - strand at 411.617 kb on - strand at 411.617 kb on - strand at 411.621 kb on + strand at 411.621 kb on + strand at 411.622 kb on - strand at 411.622 kb on - strand at 411.622 kb on - strand at 411.622 kb on - strand at 411.636 kb on + strand at 411.636 kb on + strand at 411.637 kb on - strand at 411.637 kb on - strand at 411.637 kb on - strand at 411.650 kb on + strand at 411.650 kb on + strand at 411.651 kb on - strand at 411.659 kb on + strand at 411.697 kb on + strand at 411.697 kb on + strand at 411.697 kb on + strand at 411.698 kb on - strand at 411.698 kb on - strand at 411.698 kb on - strand at 411.698 kb on - strand at 411.698 kb on - strand at 411.698 kb on - strand at 411.698 kb on - strand at 411.726 kb on + strand at 411.795 kb on - strand at 411.795 kb on - strand at 411.795 kb on - strand at 411.808 kb on - strand at 411.858 kb on + strand at 411.858 kb on + strand at 411.894 kb on - strand at 411.898 kb on - strand at 411.898 kb on - strand at 411.929 kb on + strand, within GFF3406 at 411.929 kb on + strand, within GFF3406 at 411.929 kb on + strand, within GFF3406 at 411.929 kb on + strand, within GFF3406 at 411.930 kb on - strand, within GFF3406 at 411.930 kb on - strand, within GFF3406 at 411.930 kb on - strand, within GFF3406 at 412.012 kb on - strand, within GFF3406 at 412.020 kb on + strand, within GFF3406 at 412.020 kb on + strand, within GFF3406 at 412.038 kb on + strand, within GFF3406 at 412.074 kb on + strand, within GFF3406 at 412.074 kb on + strand, within GFF3406 at 412.074 kb on + strand, within GFF3406 at 412.074 kb on + strand, within GFF3406 at 412.075 kb on - strand, within GFF3406 at 412.079 kb on + strand, within GFF3406 at 412.105 kb on + strand, within GFF3406 at 412.105 kb on + strand, within GFF3406 at 412.105 kb on + strand, within GFF3406 at 412.105 kb on + strand, within GFF3406 at 412.105 kb on + strand, within GFF3406 at 412.105 kb on + strand, within GFF3406 at 412.105 kb on + strand, within GFF3406 at 412.105 kb on + strand, within GFF3406 at 412.105 kb on + strand, within GFF3406 at 412.105 kb on + strand, within GFF3406 at 412.105 kb on + strand, within GFF3406 at 412.105 kb on + strand, within GFF3406 at 412.106 kb on - strand, within GFF3406 at 412.106 kb on - strand, within GFF3406 at 412.106 kb on - strand, within GFF3406 at 412.106 kb on - strand, within GFF3406 at 412.106 kb on - strand, within GFF3406 at 412.106 kb on - strand, within GFF3406 at 412.106 kb on - strand, within GFF3406 at 412.106 kb on - strand, within GFF3406 at 412.106 kb on - strand, within GFF3406 at 412.106 kb on - strand, within GFF3406 at 412.106 kb on - strand, within GFF3406 at 412.106 kb on - strand, within GFF3406 at 412.106 kb on - strand, within GFF3406 at 412.106 kb on - strand, within GFF3406 at 412.106 kb on - strand, within GFF3406 at 412.112 kb on - strand, within GFF3406 at 412.141 kb on + strand, within GFF3406 at 412.142 kb on - strand, within GFF3406 at 412.142 kb on - strand, within GFF3406 at 412.147 kb on + strand, within GFF3406 at 412.184 kb on + strand, within GFF3406 at 412.184 kb on + strand, within GFF3406 at 412.184 kb on + strand, within GFF3406 at 412.185 kb on - strand, within GFF3406 at 412.185 kb on - strand, within GFF3406 at 412.185 kb on - strand, within GFF3406 at 412.185 kb on - strand, within GFF3406 at 412.186 kb on + strand, within GFF3406 at 412.186 kb on + strand, within GFF3406 at 412.186 kb on + strand, within GFF3406 at 412.187 kb on - strand, within GFF3406 at 412.232 kb on - strand, within GFF3406 at 412.232 kb on - strand, within GFF3406 at 412.318 kb on + strand, within GFF3406 at 412.318 kb on + strand, within GFF3406 at 412.318 kb on + strand, within GFF3406 at 412.318 kb on + strand, within GFF3406 at 412.318 kb on + strand, within GFF3406 at 412.319 kb on - strand, within GFF3406 at 412.319 kb on - strand, within GFF3406 at 412.319 kb on - strand, within GFF3406 at 412.321 kb on + strand, within GFF3406 at 412.321 kb on + strand, within GFF3406 at 412.321 kb on + strand, within GFF3406 at 412.321 kb on + strand, within GFF3406 at 412.322 kb on - strand, within GFF3406 at 412.322 kb on - strand, within GFF3406 at 412.432 kb on - strand, within GFF3406 at 412.462 kb on + strand, within GFF3406 at 412.462 kb on + strand, within GFF3406 at 412.463 kb on - strand, within GFF3406 at 412.463 kb on - strand, within GFF3406 at 412.463 kb on - strand, within GFF3406 at 412.468 kb on + strand, within GFF3406 at 412.468 kb on + strand, within GFF3406 at 412.468 kb on + strand, within GFF3406 at 412.468 kb on + strand, within GFF3406 at 412.468 kb on + strand, within GFF3406 at 412.468 kb on + strand, within GFF3406 at 412.468 kb on + strand, within GFF3406 at 412.469 kb on - strand, within GFF3406 at 412.469 kb on - strand, within GFF3406 at 412.469 kb on - strand, within GFF3406 at 412.532 kb on + strand, within GFF3406 at 412.532 kb on + strand, within GFF3406 at 412.532 kb on + strand, within GFF3406 at 412.533 kb on - strand, within GFF3406 at 412.533 kb on - strand, within GFF3406 at 412.568 kb on - strand, within GFF3406 at 412.568 kb on - strand, within GFF3406 at 412.577 kb on + strand, within GFF3406 at 412.577 kb on + strand, within GFF3406 at 412.577 kb on + strand, within GFF3406 at 412.577 kb on + strand, within GFF3406 at 412.578 kb on - strand, within GFF3406 at 412.578 kb on - strand, within GFF3406 at 412.578 kb on - strand, within GFF3406 at 412.578 kb on - strand, within GFF3406
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 410,534 + GFF3403 0.86 +0.1 410,535 - GFF3403 0.86 -0.7 410,574 + -1.2 410,574 + -1.1 410,574 + +1.3 410,575 - +0.8 410,623 + -0.5 410,689 + -0.1 410,689 + -0.7 410,748 + GFF3404 0.15 -0.8 410,749 - GFF3404 0.15 -0.0 410,865 + GFF3404 0.45 +0.4 410,865 + GFF3404 0.45 -1.2 410,866 - GFF3404 0.45 +0.2 410,866 - GFF3404 0.45 +1.7 410,866 - GFF3404 0.45 -1.1 410,866 - GFF3404 0.45 -1.0 410,866 - GFF3404 0.45 -0.2 410,866 - GFF3404 0.45 -0.1 410,866 - GFF3404 0.45 +0.9 410,866 - GFF3404 0.45 +0.8 410,871 + GFF3404 0.46 -0.3 410,871 + GFF3404 0.46 -0.2 410,871 + GFF3404 0.46 +0.4 410,871 + GFF3404 0.46 -0.9 410,871 + GFF3404 0.46 +0.4 410,871 + GFF3404 0.46 -0.7 410,872 - GFF3404 0.46 +0.4 410,872 - GFF3404 0.46 -0.8 410,872 - GFF3404 0.46 -0.4 410,872 - GFF3404 0.46 -0.2 410,872 - GFF3404 0.46 +0.5 410,872 - GFF3404 0.46 -0.4 410,872 - GFF3404 0.46 -1.4 410,872 - GFF3404 0.46 +0.4 410,963 + GFF3404 0.69 -0.5 410,963 + GFF3404 0.69 +0.9 411,021 + GFF3404 0.84 -0.4 411,022 - GFF3404 0.84 -0.8 411,048 + +0.7 411,048 + +0.1 411,049 - -0.5 411,049 - +0.7 411,049 - -0.5 411,097 + -0.3 411,127 + -1.5 411,127 + -0.9 411,127 + -0.2 411,156 + -1.9 411,157 - -0.2 411,157 - +0.0 411,157 - +0.4 411,167 - +0.1 411,260 + -0.9 411,260 + +0.5 411,261 - -0.1 411,261 - -0.1 411,261 - +0.3 411,287 + -0.8 411,287 + -0.4 411,287 + -0.3 411,288 - +0.5 411,288 - +0.4 411,288 - +0.2 411,288 - +0.5 411,368 + -0.7 411,368 + -1.7 411,368 + -0.3 411,368 + +0.4 411,368 + +0.2 411,368 + +0.1 411,368 + -1.1 411,368 + +1.5 411,395 + GFF3405 0.12 -0.3 411,395 + GFF3405 0.12 -0.3 411,395 + GFF3405 0.12 -1.4 411,395 + GFF3405 0.12 -1.8 411,395 + GFF3405 0.12 -0.5 411,396 - GFF3405 0.13 -0.8 411,396 - GFF3405 0.13 -1.3 411,396 - GFF3405 0.13 -1.2 411,410 + GFF3405 0.20 -1.5 411,410 + GFF3405 0.20 +0.0 411,411 - GFF3405 0.20 -0.2 411,411 - GFF3405 0.20 -0.2 411,411 - GFF3405 0.20 -1.7 411,494 + GFF3405 0.60 +0.0 411,600 + -1.1 411,600 + -0.7 411,600 + -0.3 411,600 + -1.0 411,600 + -0.2 411,601 - +0.6 411,601 - +1.0 411,601 - -0.9 411,601 - -0.2 411,616 + +0.9 411,617 - +0.4 411,617 - +0.1 411,617 - +0.7 411,617 - -0.0 411,617 - -0.0 411,617 - -1.3 411,621 + -0.9 411,621 + -0.1 411,622 - +0.6 411,622 - -0.0 411,622 - -0.3 411,622 - +0.4 411,636 + -1.5 411,636 + -0.2 411,637 - -0.3 411,637 - -1.3 411,637 - -0.4 411,650 + -0.3 411,650 + -0.2 411,651 - -0.9 411,659 + -1.0 411,697 + -0.1 411,697 + -1.0 411,697 + -1.4 411,698 - +0.1 411,698 - -0.8 411,698 - -2.3 411,698 - +0.3 411,698 - -0.9 411,698 - -1.4 411,698 - -1.0 411,726 + -0.5 411,795 - +0.2 411,795 - -0.7 411,795 - +0.4 411,808 - +0.1 411,858 + +0.3 411,858 + -0.7 411,894 - -0.7 411,898 - -1.3 411,898 - +0.8 411,929 + GFF3406 0.11 +0.2 411,929 + GFF3406 0.11 -0.8 411,929 + GFF3406 0.11 +0.2 411,929 + GFF3406 0.11 -1.6 411,930 - GFF3406 0.11 -0.8 411,930 - GFF3406 0.11 +0.2 411,930 - GFF3406 0.11 +0.4 412,012 - GFF3406 0.15 +0.1 412,020 + GFF3406 0.16 -1.0 412,020 + GFF3406 0.16 +0.1 412,038 + GFF3406 0.17 -0.3 412,074 + GFF3406 0.19 +0.4 412,074 + GFF3406 0.19 -1.8 412,074 + GFF3406 0.19 -0.6 412,074 + GFF3406 0.19 +0.2 412,075 - GFF3406 0.19 -1.5 412,079 + GFF3406 0.19 +0.2 412,105 + GFF3406 0.20 -0.6 412,105 + GFF3406 0.20 -0.5 412,105 + GFF3406 0.20 +0.5 412,105 + GFF3406 0.20 -0.3 412,105 + GFF3406 0.20 +0.6 412,105 + GFF3406 0.20 -0.4 412,105 + GFF3406 0.20 +0.5 412,105 + GFF3406 0.20 -0.5 412,105 + GFF3406 0.20 -0.3 412,105 + GFF3406 0.20 -0.5 412,105 + GFF3406 0.20 +0.4 412,105 + GFF3406 0.20 +0.1 412,106 - GFF3406 0.20 +0.6 412,106 - GFF3406 0.20 +0.6 412,106 - GFF3406 0.20 -0.5 412,106 - GFF3406 0.20 +1.0 412,106 - GFF3406 0.20 +0.8 412,106 - GFF3406 0.20 -1.8 412,106 - GFF3406 0.20 +0.7 412,106 - GFF3406 0.20 +0.1 412,106 - GFF3406 0.20 -0.1 412,106 - GFF3406 0.20 -0.4 412,106 - GFF3406 0.20 +0.7 412,106 - GFF3406 0.20 +0.3 412,106 - GFF3406 0.20 -1.3 412,106 - GFF3406 0.20 -0.3 412,106 - GFF3406 0.20 -0.5 412,112 - GFF3406 0.21 +0.1 412,141 + GFF3406 0.22 -0.8 412,142 - GFF3406 0.22 +0.1 412,142 - GFF3406 0.22 +1.0 412,147 + GFF3406 0.23 +0.1 412,184 + GFF3406 0.25 -0.1 412,184 + GFF3406 0.25 -0.5 412,184 + GFF3406 0.25 -2.1 412,185 - GFF3406 0.25 -0.9 412,185 - GFF3406 0.25 +0.8 412,185 - GFF3406 0.25 +0.9 412,185 - GFF3406 0.25 -0.4 412,186 + GFF3406 0.25 +0.2 412,186 + GFF3406 0.25 +0.8 412,186 + GFF3406 0.25 -0.4 412,187 - GFF3406 0.25 -0.3 412,232 - GFF3406 0.27 -0.5 412,232 - GFF3406 0.27 -0.3 412,318 + GFF3406 0.32 -0.6 412,318 + GFF3406 0.32 -0.8 412,318 + GFF3406 0.32 -0.5 412,318 + GFF3406 0.32 +0.6 412,318 + GFF3406 0.32 +0.5 412,319 - GFF3406 0.32 -0.1 412,319 - GFF3406 0.32 -1.3 412,319 - GFF3406 0.32 -0.4 412,321 + GFF3406 0.32 +0.3 412,321 + GFF3406 0.32 +0.5 412,321 + GFF3406 0.32 -0.2 412,321 + GFF3406 0.32 -1.1 412,322 - GFF3406 0.32 -0.3 412,322 - GFF3406 0.32 -0.5 412,432 - GFF3406 0.38 +0.7 412,462 + GFF3406 0.39 -0.6 412,462 + GFF3406 0.39 -0.0 412,463 - GFF3406 0.40 +0.1 412,463 - GFF3406 0.40 +0.8 412,463 - GFF3406 0.40 +0.1 412,468 + GFF3406 0.40 -0.5 412,468 + GFF3406 0.40 +0.1 412,468 + GFF3406 0.40 +0.8 412,468 + GFF3406 0.40 -0.1 412,468 + GFF3406 0.40 -0.6 412,468 + GFF3406 0.40 -0.0 412,468 + GFF3406 0.40 -0.7 412,469 - GFF3406 0.40 -0.4 412,469 - GFF3406 0.40 +1.0 412,469 - GFF3406 0.40 +0.7 412,532 + GFF3406 0.43 +0.4 412,532 + GFF3406 0.43 +0.8 412,532 + GFF3406 0.43 +0.6 412,533 - GFF3406 0.43 +0.1 412,533 - GFF3406 0.43 +0.0 412,568 - GFF3406 0.45 +0.3 412,568 - GFF3406 0.45 -0.7 412,577 + GFF3406 0.46 -1.1 412,577 + GFF3406 0.46 +0.0 412,577 + GFF3406 0.46 +0.3 412,577 + GFF3406 0.46 +0.2 412,578 - GFF3406 0.46 -0.1 412,578 - GFF3406 0.46 +0.2 412,578 - GFF3406 0.46 -0.9 412,578 - GFF3406 0.46 +0.9
Or see this region's nucleotide sequence