Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3390 and GFF3391 are separated by 294 nucleotides GFF3391 and GFF3392 are separated by 117 nucleotides GFF3392 and GFF3393 are separated by 469 nucleotides
GFF3390 - hypothetical protein, at 401,438 to 401,809
GFF3390
GFF3391 - Phosphinothricin N-acetyltransferase, at 402,104 to 402,655
GFF3391
GFF3392 - hypothetical protein, at 402,773 to 403,108
GFF3392
GFF3393 - 3'-5' exoribonuclease, at 403,578 to 404,045
GFF3393
Position (kb) 402
403
404 Strain fitness (log2 ratio) -2
-1
0
1
2 at 401.817 kb on + strand at 401.837 kb on - strand at 402.003 kb on + strand at 402.004 kb on - strand at 402.004 kb on - strand at 402.059 kb on - strand at 402.105 kb on + strand at 402.105 kb on + strand at 402.106 kb on - strand at 402.106 kb on - strand at 402.139 kb on + strand at 402.139 kb on + strand at 402.139 kb on + strand at 402.168 kb on - strand, within GFF3391 at 402.168 kb on - strand, within GFF3391 at 402.168 kb on - strand, within GFF3391 at 402.183 kb on + strand, within GFF3391 at 402.303 kb on + strand, within GFF3391 at 402.352 kb on - strand, within GFF3391 at 402.352 kb on - strand, within GFF3391 at 402.352 kb on - strand, within GFF3391 at 402.392 kb on + strand, within GFF3391 at 402.392 kb on + strand, within GFF3391 at 402.392 kb on + strand, within GFF3391 at 402.393 kb on - strand, within GFF3391 at 402.393 kb on - strand, within GFF3391 at 402.393 kb on - strand, within GFF3391 at 402.396 kb on + strand, within GFF3391 at 402.396 kb on + strand, within GFF3391 at 402.396 kb on + strand, within GFF3391 at 402.396 kb on + strand, within GFF3391 at 402.396 kb on + strand, within GFF3391 at 402.396 kb on + strand, within GFF3391 at 402.396 kb on + strand, within GFF3391 at 402.396 kb on + strand, within GFF3391 at 402.397 kb on - strand, within GFF3391 at 402.397 kb on - strand, within GFF3391 at 402.397 kb on - strand, within GFF3391 at 402.397 kb on - strand, within GFF3391 at 402.397 kb on - strand, within GFF3391 at 402.453 kb on + strand, within GFF3391 at 402.454 kb on - strand, within GFF3391 at 402.460 kb on - strand, within GFF3391 at 402.495 kb on + strand, within GFF3391 at 402.496 kb on - strand, within GFF3391 at 402.501 kb on + strand, within GFF3391 at 402.501 kb on + strand, within GFF3391 at 402.501 kb on + strand, within GFF3391 at 402.501 kb on + strand, within GFF3391 at 402.502 kb on - strand, within GFF3391 at 402.597 kb on + strand, within GFF3391 at 402.598 kb on - strand, within GFF3391 at 402.598 kb on - strand, within GFF3391 at 402.598 kb on - strand, within GFF3391 at 402.598 kb on - strand, within GFF3391 at 402.598 kb on - strand, within GFF3391 at 402.615 kb on - strand at 402.687 kb on + strand at 402.697 kb on - strand at 402.697 kb on - strand at 402.722 kb on + strand at 402.723 kb on - strand at 402.723 kb on - strand at 402.723 kb on - strand at 402.733 kb on + strand at 402.733 kb on + strand at 402.733 kb on + strand at 402.733 kb on + strand at 402.734 kb on - strand at 402.734 kb on - strand at 402.757 kb on + strand at 402.758 kb on - strand at 402.767 kb on - strand at 402.775 kb on - strand at 402.775 kb on - strand at 402.791 kb on + strand at 402.804 kb on + strand at 402.804 kb on + strand at 402.804 kb on + strand at 402.804 kb on + strand at 402.805 kb on - strand at 402.805 kb on - strand at 402.805 kb on - strand at 402.805 kb on - strand at 402.805 kb on - strand at 402.810 kb on + strand, within GFF3392 at 402.811 kb on - strand, within GFF3392 at 402.865 kb on + strand, within GFF3392 at 402.865 kb on + strand, within GFF3392 at 402.866 kb on - strand, within GFF3392 at 403.034 kb on - strand, within GFF3392 at 403.095 kb on - strand at 403.108 kb on + strand at 403.108 kb on + strand at 403.108 kb on + strand at 403.109 kb on - strand at 403.109 kb on - strand at 403.151 kb on + strand at 403.152 kb on - strand at 403.218 kb on + strand at 403.218 kb on + strand at 403.219 kb on - strand at 403.219 kb on - strand at 403.258 kb on + strand at 403.258 kb on + strand at 403.259 kb on - strand at 403.303 kb on + strand at 403.304 kb on + strand at 403.304 kb on + strand at 403.304 kb on + strand at 403.304 kb on + strand at 403.304 kb on + strand at 403.304 kb on + strand at 403.305 kb on - strand at 403.305 kb on - strand at 403.305 kb on - strand at 403.305 kb on - strand at 403.305 kb on - strand at 403.305 kb on - strand at 403.306 kb on + strand at 403.307 kb on - strand at 403.342 kb on + strand at 403.342 kb on + strand at 403.378 kb on + strand at 403.378 kb on + strand at 403.379 kb on - strand at 403.379 kb on - strand at 403.399 kb on - strand at 403.399 kb on - strand at 403.414 kb on + strand at 403.415 kb on - strand at 403.465 kb on + strand at 403.466 kb on - strand at 403.466 kb on - strand at 403.520 kb on - strand at 403.539 kb on + strand at 403.633 kb on + strand, within GFF3393 at 403.633 kb on + strand, within GFF3393 at 403.634 kb on - strand, within GFF3393 at 403.672 kb on - strand, within GFF3393 at 403.672 kb on - strand, within GFF3393 at 403.699 kb on + strand, within GFF3393 at 403.723 kb on + strand, within GFF3393 at 403.723 kb on + strand, within GFF3393 at 403.724 kb on - strand, within GFF3393 at 403.852 kb on - strand, within GFF3393 at 403.852 kb on - strand, within GFF3393 at 403.881 kb on + strand, within GFF3393 at 403.882 kb on - strand, within GFF3393 at 403.882 kb on - strand, within GFF3393 at 403.882 kb on - strand, within GFF3393 at 403.892 kb on + strand, within GFF3393 at 403.892 kb on + strand, within GFF3393 at 403.893 kb on - strand, within GFF3393 at 403.893 kb on - strand, within GFF3393 at 403.917 kb on + strand, within GFF3393 at 403.939 kb on + strand, within GFF3393 at 403.940 kb on - strand, within GFF3393 at 403.940 kb on - strand, within GFF3393 at 403.994 kb on + strand, within GFF3393 at 404.038 kb on + strand at 404.038 kb on + strand at 404.039 kb on - strand at 404.039 kb on - strand at 404.039 kb on - strand at 404.096 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 401,817 + +0.5 401,837 - -0.6 402,003 + -0.5 402,004 - -0.3 402,004 - -0.4 402,059 - -0.5 402,105 + +0.3 402,105 + +0.7 402,106 - -0.4 402,106 - -0.4 402,139 + +0.0 402,139 + +0.7 402,139 + -0.5 402,168 - GFF3391 0.12 -1.2 402,168 - GFF3391 0.12 -0.3 402,168 - GFF3391 0.12 +1.4 402,183 + GFF3391 0.14 +0.1 402,303 + GFF3391 0.36 -0.7 402,352 - GFF3391 0.45 +0.5 402,352 - GFF3391 0.45 -0.1 402,352 - GFF3391 0.45 -0.2 402,392 + GFF3391 0.52 -1.5 402,392 + GFF3391 0.52 +0.5 402,392 + GFF3391 0.52 -0.6 402,393 - GFF3391 0.52 -1.1 402,393 - GFF3391 0.52 -0.3 402,393 - GFF3391 0.52 +0.5 402,396 + GFF3391 0.53 -1.1 402,396 + GFF3391 0.53 +0.4 402,396 + GFF3391 0.53 +0.6 402,396 + GFF3391 0.53 -0.4 402,396 + GFF3391 0.53 -0.8 402,396 + GFF3391 0.53 -0.6 402,396 + GFF3391 0.53 -0.6 402,396 + GFF3391 0.53 -0.3 402,397 - GFF3391 0.53 -0.3 402,397 - GFF3391 0.53 -0.1 402,397 - GFF3391 0.53 +0.5 402,397 - GFF3391 0.53 +0.5 402,397 - GFF3391 0.53 -1.8 402,453 + GFF3391 0.63 -0.2 402,454 - GFF3391 0.63 +0.4 402,460 - GFF3391 0.64 +0.4 402,495 + GFF3391 0.71 +0.3 402,496 - GFF3391 0.71 +0.2 402,501 + GFF3391 0.72 -0.7 402,501 + GFF3391 0.72 -0.9 402,501 + GFF3391 0.72 -0.1 402,501 + GFF3391 0.72 -0.2 402,502 - GFF3391 0.72 +0.4 402,597 + GFF3391 0.89 +1.0 402,598 - GFF3391 0.89 -1.3 402,598 - GFF3391 0.89 -0.0 402,598 - GFF3391 0.89 -0.8 402,598 - GFF3391 0.89 -0.3 402,598 - GFF3391 0.89 -1.0 402,615 - -2.7 402,687 + -0.9 402,697 - +0.8 402,697 - +0.5 402,722 + -0.7 402,723 - -0.5 402,723 - +0.1 402,723 - -0.4 402,733 + -0.5 402,733 + +0.7 402,733 + -0.8 402,733 + +0.4 402,734 - +0.5 402,734 - -0.6 402,757 + +0.0 402,758 - +0.4 402,767 - -0.2 402,775 - +0.1 402,775 - -0.2 402,791 + -0.8 402,804 + -0.4 402,804 + +0.2 402,804 + -0.3 402,804 + -1.3 402,805 - -1.0 402,805 - +0.7 402,805 - -0.3 402,805 - -0.0 402,805 - -0.3 402,810 + GFF3392 0.11 -2.3 402,811 - GFF3392 0.11 -0.9 402,865 + GFF3392 0.27 -0.4 402,865 + GFF3392 0.27 -0.6 402,866 - GFF3392 0.28 +0.6 403,034 - GFF3392 0.78 -0.1 403,095 - +1.7 403,108 + +0.1 403,108 + +0.1 403,108 + -0.4 403,109 - -0.9 403,109 - -0.1 403,151 + -0.1 403,152 - -0.9 403,218 + +0.0 403,218 + -1.7 403,219 - -0.0 403,219 - +0.1 403,258 + +1.2 403,258 + +0.9 403,259 - -0.0 403,303 + -0.1 403,304 + -0.9 403,304 + -1.6 403,304 + +0.1 403,304 + +1.4 403,304 + +0.5 403,304 + -0.4 403,305 - +0.4 403,305 - +1.4 403,305 - -0.3 403,305 - -0.0 403,305 - -0.0 403,305 - +0.1 403,306 + +0.1 403,307 - -0.0 403,342 + +1.3 403,342 + -1.6 403,378 + +0.3 403,378 + +0.9 403,379 - +0.2 403,379 - +0.0 403,399 - -1.8 403,399 - +0.3 403,414 + +1.2 403,415 - -0.5 403,465 + +1.0 403,466 - -0.1 403,466 - +0.8 403,520 - -1.3 403,539 + +0.6 403,633 + GFF3393 0.12 +2.3 403,633 + GFF3393 0.12 -0.5 403,634 - GFF3393 0.12 +0.9 403,672 - GFF3393 0.20 +0.5 403,672 - GFF3393 0.20 +0.2 403,699 + GFF3393 0.26 +1.4 403,723 + GFF3393 0.31 +0.8 403,723 + GFF3393 0.31 -0.8 403,724 - GFF3393 0.31 -0.1 403,852 - GFF3393 0.59 -1.5 403,852 - GFF3393 0.59 -1.2 403,881 + GFF3393 0.65 -1.3 403,882 - GFF3393 0.65 -0.3 403,882 - GFF3393 0.65 +0.4 403,882 - GFF3393 0.65 -1.2 403,892 + GFF3393 0.67 -1.1 403,892 + GFF3393 0.67 +0.2 403,893 - GFF3393 0.67 -0.6 403,893 - GFF3393 0.67 -0.1 403,917 + GFF3393 0.72 -0.1 403,939 + GFF3393 0.77 +0.1 403,940 - GFF3393 0.77 -0.2 403,940 - GFF3393 0.77 -1.1 403,994 + GFF3393 0.89 +0.7 404,038 + -0.9 404,038 + -0.2 404,039 - +0.4 404,039 - +0.1 404,039 - +1.0 404,096 - +1.0
Or see this region's nucleotide sequence