Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF333 and GFF334 overlap by 14 nucleotides GFF334 and GFF335 are separated by 198 nucleotides GFF335 and GFF336 are separated by 171 nucleotides
GFF333 - L-cystine transport system permease protein YecS, at 369,921 to 370,571
GFF333
GFF334 - Glutamine transport ATP-binding protein GlnQ, at 370,558 to 371,295
GFF334
GFF335 - Exopolyphosphatase, at 371,494 to 372,996
GFF335
GFF336 - Polyphosphate kinase, at 373,168 to 375,393
GFF336
Position (kb) 371
372
373 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 370.500 kb on + strand, within GFF333 at 370.500 kb on + strand, within GFF333 at 370.516 kb on - strand at 370.539 kb on + strand at 370.569 kb on + strand at 370.569 kb on + strand at 370.587 kb on + strand at 370.587 kb on + strand at 370.587 kb on + strand at 370.588 kb on - strand at 370.591 kb on + strand at 370.591 kb on + strand at 370.592 kb on - strand at 370.592 kb on - strand at 370.592 kb on - strand at 370.592 kb on - strand at 370.610 kb on + strand at 370.610 kb on + strand at 370.611 kb on - strand at 370.611 kb on - strand at 370.753 kb on + strand, within GFF334 at 370.753 kb on + strand, within GFF334 at 370.886 kb on + strand, within GFF334 at 371.269 kb on - strand at 371.406 kb on + strand at 371.828 kb on + strand, within GFF335 at 371.828 kb on + strand, within GFF335 at 371.828 kb on + strand, within GFF335 at 371.828 kb on + strand, within GFF335 at 371.829 kb on - strand, within GFF335 at 371.866 kb on + strand, within GFF335 at 371.867 kb on - strand, within GFF335 at 371.867 kb on - strand, within GFF335 at 371.938 kb on - strand, within GFF335 at 372.019 kb on + strand, within GFF335 at 372.020 kb on - strand, within GFF335 at 372.020 kb on - strand, within GFF335 at 372.025 kb on - strand, within GFF335 at 372.025 kb on - strand, within GFF335 at 372.148 kb on - strand, within GFF335 at 372.400 kb on + strand, within GFF335 at 372.400 kb on + strand, within GFF335 at 372.401 kb on - strand, within GFF335 at 372.626 kb on - strand, within GFF335 at 372.631 kb on + strand, within GFF335 at 372.735 kb on + strand, within GFF335 at 373.002 kb on - strand at 373.058 kb on + strand at 373.058 kb on + strand at 373.058 kb on + strand at 373.058 kb on + strand at 373.086 kb on - strand at 373.086 kb on - strand at 373.086 kb on - strand at 373.265 kb on + strand at 373.266 kb on - strand at 373.314 kb on - strand at 373.314 kb on - strand at 373.454 kb on + strand, within GFF336 at 373.454 kb on + strand, within GFF336 at 373.455 kb on - strand, within GFF336 at 373.595 kb on + strand, within GFF336 at 373.595 kb on + strand, within GFF336 at 373.595 kb on + strand, within GFF336 at 373.596 kb on - strand, within GFF336 at 373.832 kb on + strand, within GFF336 at 373.832 kb on + strand, within GFF336 at 373.832 kb on + strand, within GFF336 at 373.841 kb on + strand, within GFF336 at 373.841 kb on + strand, within GFF336 at 373.865 kb on + strand, within GFF336 at 373.866 kb on - strand, within GFF336 at 373.866 kb on - strand, within GFF336 at 373.866 kb on - strand, within GFF336 at 373.890 kb on - strand, within GFF336 at 373.964 kb on + strand, within GFF336 at 373.964 kb on + strand, within GFF336 at 373.965 kb on - strand, within GFF336 at 373.965 kb on - strand, within GFF336
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 370,500 + GFF333 0.89 +0.5 370,500 + GFF333 0.89 +0.2 370,516 - +1.0 370,539 + +0.2 370,569 + -0.2 370,569 + -0.5 370,587 + +0.1 370,587 + +0.5 370,587 + +0.3 370,588 - +0.0 370,591 + -0.5 370,591 + -0.4 370,592 - -0.9 370,592 - +0.5 370,592 - -0.2 370,592 - +1.5 370,610 + +0.0 370,610 + -0.4 370,611 - -0.3 370,611 - +0.3 370,753 + GFF334 0.26 -0.3 370,753 + GFF334 0.26 +0.5 370,886 + GFF334 0.44 -0.4 371,269 - -1.8 371,406 + +1.2 371,828 + GFF335 0.22 -2.2 371,828 + GFF335 0.22 -0.7 371,828 + GFF335 0.22 +0.8 371,828 + GFF335 0.22 -0.5 371,829 - GFF335 0.22 -0.5 371,866 + GFF335 0.25 -1.4 371,867 - GFF335 0.25 -0.1 371,867 - GFF335 0.25 -2.9 371,938 - GFF335 0.30 -0.2 372,019 + GFF335 0.35 -0.3 372,020 - GFF335 0.35 -0.1 372,020 - GFF335 0.35 -1.4 372,025 - GFF335 0.35 -0.9 372,025 - GFF335 0.35 +0.2 372,148 - GFF335 0.44 -2.1 372,400 + GFF335 0.60 -0.2 372,400 + GFF335 0.60 -1.0 372,401 - GFF335 0.60 +0.0 372,626 - GFF335 0.75 -1.5 372,631 + GFF335 0.76 +0.6 372,735 + GFF335 0.83 +0.8 373,002 - +0.8 373,058 + -1.1 373,058 + +0.2 373,058 + +0.3 373,058 + -0.3 373,086 - -1.3 373,086 - +0.6 373,086 - +0.8 373,265 + -0.4 373,266 - -0.1 373,314 - +1.4 373,314 - +0.1 373,454 + GFF336 0.13 -0.0 373,454 + GFF336 0.13 -0.4 373,455 - GFF336 0.13 -0.6 373,595 + GFF336 0.19 +0.8 373,595 + GFF336 0.19 +0.1 373,595 + GFF336 0.19 +0.2 373,596 - GFF336 0.19 -0.2 373,832 + GFF336 0.30 +0.4 373,832 + GFF336 0.30 +0.5 373,832 + GFF336 0.30 -0.6 373,841 + GFF336 0.30 -0.8 373,841 + GFF336 0.30 +0.2 373,865 + GFF336 0.31 +0.6 373,866 - GFF336 0.31 +0.4 373,866 - GFF336 0.31 -0.4 373,866 - GFF336 0.31 +0.1 373,890 - GFF336 0.32 +0.5 373,964 + GFF336 0.36 +0.1 373,964 + GFF336 0.36 -0.5 373,965 - GFF336 0.36 +1.4 373,965 - GFF336 0.36 -0.1
Or see this region's nucleotide sequence