Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3336 and GFF3337 are separated by 107 nucleotides GFF3337 and GFF3338 are separated by 9 nucleotides GFF3338 and GFF3339 are separated by 23 nucleotides
GFF3336 - hypothetical protein, at 342,606 to 342,968
GFF3336
GFF3337 - hypothetical protein, at 343,076 to 343,348
GFF3337
GFF3338 - hypothetical protein, at 343,358 to 344,080
GFF3338
GFF3339 - hypothetical protein, at 344,104 to 344,988
GFF3339
Position (kb) 343
344 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 342.143 kb on - strand at 342.143 kb on - strand at 342.178 kb on + strand at 342.205 kb on + strand at 342.206 kb on - strand at 342.206 kb on - strand at 342.286 kb on + strand at 342.287 kb on - strand at 342.355 kb on + strand at 342.356 kb on - strand at 342.413 kb on - strand at 342.413 kb on - strand at 342.413 kb on - strand at 342.516 kb on + strand at 342.516 kb on + strand at 342.517 kb on - strand at 342.517 kb on - strand at 342.517 kb on - strand at 342.517 kb on - strand at 342.517 kb on - strand at 342.520 kb on + strand at 342.540 kb on + strand at 342.540 kb on + strand at 342.540 kb on + strand at 342.541 kb on - strand at 342.595 kb on + strand at 342.596 kb on - strand at 342.596 kb on - strand at 342.701 kb on - strand, within GFF3336 at 343.078 kb on - strand at 343.078 kb on - strand at 343.117 kb on - strand, within GFF3337 at 343.135 kb on - strand, within GFF3337 at 343.359 kb on + strand at 343.641 kb on + strand, within GFF3338 at 343.641 kb on + strand, within GFF3338 at 343.642 kb on - strand, within GFF3338 at 343.840 kb on - strand, within GFF3338 at 344.066 kb on + strand at 344.066 kb on + strand at 344.067 kb on - strand at 344.067 kb on - strand at 344.072 kb on + strand at 344.073 kb on - strand at 344.222 kb on + strand, within GFF3339 at 344.222 kb on + strand, within GFF3339 at 344.222 kb on + strand, within GFF3339 at 344.222 kb on + strand, within GFF3339 at 344.222 kb on + strand, within GFF3339 at 344.222 kb on + strand, within GFF3339 at 344.222 kb on + strand, within GFF3339 at 344.222 kb on + strand, within GFF3339 at 344.222 kb on + strand, within GFF3339 at 344.222 kb on + strand, within GFF3339 at 344.223 kb on - strand, within GFF3339 at 344.223 kb on - strand, within GFF3339 at 344.223 kb on - strand, within GFF3339 at 344.223 kb on - strand, within GFF3339 at 344.223 kb on - strand, within GFF3339 at 344.223 kb on - strand, within GFF3339 at 344.223 kb on - strand, within GFF3339 at 344.257 kb on + strand, within GFF3339 at 344.258 kb on - strand, within GFF3339 at 344.258 kb on - strand, within GFF3339
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 342,143 - -0.7 342,143 - +0.7 342,178 + -0.9 342,205 + -0.2 342,206 - +1.0 342,206 - +0.2 342,286 + -0.2 342,287 - +1.1 342,355 + -0.8 342,356 - +0.6 342,413 - -1.4 342,413 - -0.4 342,413 - +0.2 342,516 + -1.2 342,516 + -0.1 342,517 - -1.1 342,517 - -0.2 342,517 - +0.0 342,517 - -0.5 342,517 - +0.4 342,520 + +0.3 342,540 + -0.3 342,540 + -0.9 342,540 + +0.7 342,541 - -0.4 342,595 + -0.3 342,596 - -0.4 342,596 - +0.6 342,701 - GFF3336 0.26 +0.0 343,078 - -1.6 343,078 - +1.4 343,117 - GFF3337 0.15 -0.1 343,135 - GFF3337 0.22 -1.2 343,359 + -1.1 343,641 + GFF3338 0.39 -0.7 343,641 + GFF3338 0.39 +1.0 343,642 - GFF3338 0.39 -1.2 343,840 - GFF3338 0.67 +0.4 344,066 + +1.2 344,066 + +0.1 344,067 - +0.1 344,067 - -0.8 344,072 + +0.7 344,073 - +0.4 344,222 + GFF3339 0.13 +0.8 344,222 + GFF3339 0.13 +1.0 344,222 + GFF3339 0.13 -0.4 344,222 + GFF3339 0.13 -0.7 344,222 + GFF3339 0.13 +0.4 344,222 + GFF3339 0.13 +0.0 344,222 + GFF3339 0.13 -0.5 344,222 + GFF3339 0.13 +0.9 344,222 + GFF3339 0.13 -3.2 344,222 + GFF3339 0.13 +0.2 344,223 - GFF3339 0.13 -1.0 344,223 - GFF3339 0.13 -1.2 344,223 - GFF3339 0.13 +2.0 344,223 - GFF3339 0.13 -0.3 344,223 - GFF3339 0.13 +0.2 344,223 - GFF3339 0.13 -0.0 344,223 - GFF3339 0.13 -1.5 344,257 + GFF3339 0.17 +0.5 344,258 - GFF3339 0.17 -0.0 344,258 - GFF3339 0.17 +1.0
Or see this region's nucleotide sequence