Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3307 and GFF3308 are separated by 151 nucleotides GFF3308 and GFF3309 are separated by 83 nucleotides GFF3309 and GFF3310 overlap by 4 nucleotides
GFF3307 - Phosphoribosylamine--glycine ligase, at 306,073 to 307,368
GFF3307
GFF3308 - Bifunctional purine biosynthesis protein PurH, at 307,520 to 309,127
GFF3308
GFF3309 - DNA-binding protein Fis, at 309,211 to 309,531
GFF3309
GFF3310 - tRNA-dihydrouridine synthase B, at 309,528 to 310,538
GFF3310
Position (kb) 307
308
309
310 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 306.561 kb on - strand, within GFF3307 at 306.576 kb on - strand, within GFF3307 at 306.576 kb on - strand, within GFF3307 at 306.576 kb on - strand, within GFF3307 at 306.576 kb on - strand, within GFF3307 at 306.675 kb on - strand, within GFF3307 at 306.781 kb on - strand, within GFF3307 at 307.390 kb on + strand at 307.391 kb on - strand at 307.391 kb on - strand at 307.391 kb on - strand at 307.502 kb on + strand at 307.518 kb on - strand at 307.550 kb on + strand at 307.550 kb on + strand at 307.550 kb on + strand at 307.550 kb on + strand at 307.550 kb on + strand at 307.551 kb on - strand at 307.551 kb on - strand at 307.833 kb on + strand, within GFF3308 at 307.833 kb on + strand, within GFF3308 at 307.834 kb on - strand, within GFF3308 at 307.834 kb on - strand, within GFF3308 at 307.834 kb on - strand, within GFF3308 at 307.834 kb on - strand, within GFF3308 at 307.834 kb on - strand, within GFF3308 at 307.834 kb on - strand, within GFF3308 at 308.027 kb on + strand, within GFF3308 at 308.027 kb on + strand, within GFF3308 at 308.027 kb on + strand, within GFF3308 at 308.028 kb on - strand, within GFF3308 at 308.028 kb on - strand, within GFF3308 at 308.190 kb on + strand, within GFF3308 at 308.202 kb on + strand, within GFF3308 at 308.409 kb on + strand, within GFF3308 at 308.409 kb on + strand, within GFF3308 at 308.409 kb on + strand, within GFF3308 at 308.410 kb on - strand, within GFF3308 at 308.547 kb on + strand, within GFF3308 at 308.547 kb on + strand, within GFF3308 at 308.547 kb on + strand, within GFF3308 at 308.547 kb on + strand, within GFF3308 at 308.547 kb on + strand, within GFF3308 at 308.547 kb on + strand, within GFF3308 at 308.548 kb on - strand, within GFF3308 at 308.548 kb on - strand, within GFF3308 at 308.548 kb on - strand, within GFF3308 at 308.548 kb on - strand, within GFF3308 at 308.548 kb on - strand, within GFF3308 at 308.548 kb on - strand, within GFF3308 at 308.548 kb on - strand, within GFF3308 at 308.548 kb on - strand, within GFF3308 at 308.548 kb on - strand, within GFF3308 at 308.548 kb on - strand, within GFF3308 at 308.548 kb on - strand, within GFF3308 at 308.548 kb on - strand, within GFF3308 at 308.548 kb on - strand, within GFF3308 at 308.568 kb on + strand, within GFF3308 at 308.568 kb on + strand, within GFF3308 at 308.619 kb on + strand, within GFF3308 at 308.620 kb on - strand, within GFF3308 at 308.620 kb on - strand, within GFF3308 at 308.949 kb on + strand, within GFF3308 at 309.112 kb on + strand at 309.569 kb on - strand at 309.615 kb on - strand at 309.674 kb on - strand, within GFF3310 at 309.674 kb on - strand, within GFF3310 at 309.722 kb on - strand, within GFF3310 at 309.722 kb on - strand, within GFF3310 at 309.722 kb on - strand, within GFF3310 at 309.862 kb on - strand, within GFF3310 at 309.899 kb on - strand, within GFF3310 at 310.001 kb on - strand, within GFF3310
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 306,561 - GFF3307 0.38 -1.5 306,576 - GFF3307 0.39 -1.3 306,576 - GFF3307 0.39 -0.9 306,576 - GFF3307 0.39 -0.9 306,576 - GFF3307 0.39 -1.1 306,675 - GFF3307 0.46 -1.9 306,781 - GFF3307 0.55 -1.3 307,390 + -1.5 307,391 - -1.0 307,391 - -2.2 307,391 - -0.5 307,502 + -1.4 307,518 - +0.3 307,550 + -1.8 307,550 + -2.8 307,550 + -0.9 307,550 + -0.6 307,550 + -2.5 307,551 - -1.6 307,551 - -0.9 307,833 + GFF3308 0.19 -2.1 307,833 + GFF3308 0.19 -1.6 307,834 - GFF3308 0.20 -1.5 307,834 - GFF3308 0.20 -1.9 307,834 - GFF3308 0.20 -1.6 307,834 - GFF3308 0.20 -2.5 307,834 - GFF3308 0.20 -1.5 307,834 - GFF3308 0.20 -1.5 308,027 + GFF3308 0.32 -1.6 308,027 + GFF3308 0.32 -0.9 308,027 + GFF3308 0.32 -2.5 308,028 - GFF3308 0.32 -2.8 308,028 - GFF3308 0.32 -1.1 308,190 + GFF3308 0.42 -2.8 308,202 + GFF3308 0.42 -2.0 308,409 + GFF3308 0.55 -0.6 308,409 + GFF3308 0.55 -2.3 308,409 + GFF3308 0.55 -2.4 308,410 - GFF3308 0.55 -1.3 308,547 + GFF3308 0.64 -1.5 308,547 + GFF3308 0.64 -3.0 308,547 + GFF3308 0.64 -2.5 308,547 + GFF3308 0.64 -2.5 308,547 + GFF3308 0.64 -3.1 308,547 + GFF3308 0.64 -0.3 308,548 - GFF3308 0.64 -1.6 308,548 - GFF3308 0.64 -1.6 308,548 - GFF3308 0.64 -1.9 308,548 - GFF3308 0.64 -1.1 308,548 - GFF3308 0.64 -2.1 308,548 - GFF3308 0.64 -1.3 308,548 - GFF3308 0.64 -1.1 308,548 - GFF3308 0.64 -1.5 308,548 - GFF3308 0.64 -0.6 308,548 - GFF3308 0.64 -2.5 308,548 - GFF3308 0.64 -2.4 308,548 - GFF3308 0.64 -2.7 308,548 - GFF3308 0.64 -2.1 308,568 + GFF3308 0.65 -0.6 308,568 + GFF3308 0.65 -1.6 308,619 + GFF3308 0.68 -1.6 308,620 - GFF3308 0.68 -2.0 308,620 - GFF3308 0.68 -0.3 308,949 + GFF3308 0.89 -2.2 309,112 + -0.3 309,569 - -0.3 309,615 - -0.8 309,674 - GFF3310 0.14 -0.4 309,674 - GFF3310 0.14 +0.5 309,722 - GFF3310 0.19 -0.2 309,722 - GFF3310 0.19 -0.1 309,722 - GFF3310 0.19 -0.8 309,862 - GFF3310 0.33 -0.0 309,899 - GFF3310 0.37 +0.8 310,001 - GFF3310 0.47 -1.5
Or see this region's nucleotide sequence