Strain Fitness in Pseudomonas sp. DMC3 around GFF3229

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3228 and GFF3229 are separated by 764 nucleotidesGFF3229 and GFF3230 overlap by 4 nucleotides GFF3228 - Iron-utilization periplasmic protein, at 203,609 to 204,619 GFF3228 GFF3229 - Ribonuclease R, at 205,384 to 208,014 GFF3229 GFF3230 - 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB, at 208,011 to 208,775 GFF3230 Position (kb) 205 206 207 208 209Strain fitness (log2 ratio) -2 -1 0 1at 204.513 kb on + strand, within GFF3228at 204.513 kb on + strand, within GFF3228at 204.514 kb on - strand, within GFF3228at 204.514 kb on - strand, within GFF3228at 204.514 kb on - strand, within GFF3228at 204.514 kb on - strand, within GFF3228at 204.575 kb on + strandat 204.576 kb on - strandat 204.605 kb on - strandat 204.672 kb on + strandat 204.673 kb on - strandat 204.715 kb on + strandat 204.715 kb on + strandat 204.716 kb on - strandat 204.716 kb on - strandat 204.931 kb on + strandat 204.932 kb on - strandat 204.952 kb on + strandat 204.971 kb on + strandat 204.974 kb on + strandat 205.055 kb on - strandat 205.055 kb on - strandat 205.288 kb on + strandat 205.288 kb on + strandat 205.288 kb on + strandat 205.288 kb on + strandat 205.288 kb on + strandat 205.289 kb on - strandat 205.309 kb on - strandat 205.309 kb on - strandat 205.309 kb on - strandat 205.310 kb on + strandat 205.310 kb on + strandat 205.310 kb on + strandat 205.310 kb on + strandat 205.310 kb on + strandat 205.310 kb on + strandat 205.310 kb on + strandat 205.310 kb on + strandat 205.310 kb on + strandat 205.311 kb on - strandat 205.311 kb on - strandat 205.311 kb on - strandat 205.311 kb on - strandat 205.311 kb on - strandat 205.311 kb on - strandat 205.311 kb on - strandat 205.311 kb on - strandat 205.311 kb on - strandat 205.341 kb on + strandat 205.341 kb on + strandat 205.341 kb on + strandat 205.352 kb on - strandat 205.360 kb on + strandat 205.362 kb on + strandat 205.362 kb on + strandat 205.362 kb on + strandat 205.362 kb on + strandat 205.362 kb on + strandat 205.362 kb on + strandat 205.363 kb on - strandat 205.363 kb on - strandat 205.363 kb on - strandat 205.363 kb on - strandat 205.363 kb on - strandat 205.363 kb on - strandat 205.363 kb on - strandat 205.363 kb on - strandat 205.435 kb on + strandat 205.603 kb on + strandat 205.603 kb on + strandat 205.604 kb on - strandat 205.604 kb on - strandat 205.622 kb on - strandat 206.044 kb on + strand, within GFF3229at 206.045 kb on - strand, within GFF3229at 206.045 kb on - strand, within GFF3229at 206.045 kb on - strand, within GFF3229at 206.045 kb on - strand, within GFF3229at 206.045 kb on - strand, within GFF3229at 206.087 kb on - strand, within GFF3229at 206.299 kb on + strand, within GFF3229at 206.299 kb on + strand, within GFF3229at 206.299 kb on + strand, within GFF3229at 206.300 kb on - strand, within GFF3229at 206.300 kb on - strand, within GFF3229at 206.300 kb on - strand, within GFF3229at 206.327 kb on - strand, within GFF3229at 206.524 kb on + strand, within GFF3229at 206.525 kb on - strand, within GFF3229at 206.525 kb on - strand, within GFF3229at 206.560 kb on + strand, within GFF3229at 206.561 kb on - strand, within GFF3229at 206.626 kb on + strand, within GFF3229at 206.627 kb on - strand, within GFF3229at 206.659 kb on + strand, within GFF3229at 206.659 kb on + strand, within GFF3229at 206.668 kb on + strand, within GFF3229at 206.676 kb on - strand, within GFF3229at 206.696 kb on + strand, within GFF3229at 206.875 kb on + strand, within GFF3229at 207.110 kb on - strand, within GFF3229at 207.118 kb on + strand, within GFF3229at 207.118 kb on + strand, within GFF3229at 207.119 kb on - strand, within GFF3229at 207.256 kb on + strand, within GFF3229at 207.448 kb on - strand, within GFF3229at 207.451 kb on + strand, within GFF3229at 207.451 kb on + strand, within GFF3229at 207.451 kb on + strand, within GFF3229at 207.451 kb on + strand, within GFF3229at 207.452 kb on - strand, within GFF3229at 207.494 kb on - strand, within GFF3229at 207.494 kb on - strand, within GFF3229at 207.494 kb on - strand, within GFF3229at 207.496 kb on + strand, within GFF3229at 207.496 kb on + strand, within GFF3229at 207.497 kb on - strand, within GFF3229at 207.596 kb on + strand, within GFF3229at 207.597 kb on - strand, within GFF3229at 207.859 kb on - strandat 208.048 kb on + strandat 208.528 kb on + strand, within GFF3230at 208.563 kb on + strand, within GFF3230at 208.564 kb on - strand, within GFF3230at 208.564 kb on - strand, within GFF3230at 208.564 kb on - strand, within GFF3230at 208.564 kb on - strand, within GFF3230at 208.564 kb on - strand, within GFF3230at 208.650 kb on + strand, within GFF3230at 208.650 kb on + strand, within GFF3230at 208.651 kb on - strand, within GFF3230at 208.651 kb on - strand, within GFF3230at 208.919 kb on + strandat 208.919 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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204,513 + GFF3228 0.89 -0.3
204,513 + GFF3228 0.89 +0.9
204,514 - GFF3228 0.90 -0.3
204,514 - GFF3228 0.90 -1.1
204,514 - GFF3228 0.90 -0.1
204,514 - GFF3228 0.90 -0.3
204,575 + -1.4
204,576 - +0.5
204,605 - -1.6
204,672 + -1.1
204,673 - +0.3
204,715 + -0.6
204,715 + -0.7
204,716 - -0.2
204,716 - +0.4
204,931 + -0.0
204,932 - +0.9
204,952 + +0.5
204,971 + -0.0
204,974 + -1.3
205,055 - -0.8
205,055 - -1.0
205,288 + -1.0
205,288 + -0.5
205,288 + -0.3
205,288 + -0.2
205,288 + +0.2
205,289 - +0.2
205,309 - +0.7
205,309 - +0.3
205,309 - +0.5
205,310 + +0.3
205,310 + +0.7
205,310 + +0.4
205,310 + +0.6
205,310 + +0.6
205,310 + -2.5
205,310 + -0.9
205,310 + -0.3
205,310 + -1.3
205,311 - +0.1
205,311 - -0.6
205,311 - -0.4
205,311 - -0.0
205,311 - +0.6
205,311 - +1.1
205,311 - +0.7
205,311 - +0.6
205,311 - -0.3
205,341 + -0.5
205,341 + -1.1
205,341 + +1.7
205,352 - -1.7
205,360 + -0.4
205,362 + -0.3
205,362 + -0.6
205,362 + +0.1
205,362 + -0.1
205,362 + +0.2
205,362 + +0.5
205,363 - -1.3
205,363 - +0.3
205,363 - +1.3
205,363 - +0.3
205,363 - -0.6
205,363 - +1.5
205,363 - -0.1
205,363 - -0.3
205,435 + +1.1
205,603 + -0.3
205,603 + -0.6
205,604 - -0.3
205,604 - +0.7
205,622 - -0.3
206,044 + GFF3229 0.25 +0.3
206,045 - GFF3229 0.25 +0.9
206,045 - GFF3229 0.25 -0.6
206,045 - GFF3229 0.25 -0.1
206,045 - GFF3229 0.25 +0.1
206,045 - GFF3229 0.25 -0.6
206,087 - GFF3229 0.27 +1.3
206,299 + GFF3229 0.35 -0.9
206,299 + GFF3229 0.35 -1.1
206,299 + GFF3229 0.35 -0.3
206,300 - GFF3229 0.35 -0.6
206,300 - GFF3229 0.35 +0.7
206,300 - GFF3229 0.35 -0.3
206,327 - GFF3229 0.36 -0.3
206,524 + GFF3229 0.43 -0.4
206,525 - GFF3229 0.43 -0.6
206,525 - GFF3229 0.43 -0.6
206,560 + GFF3229 0.45 -0.6
206,561 - GFF3229 0.45 +0.7
206,626 + GFF3229 0.47 -0.3
206,627 - GFF3229 0.47 +1.1
206,659 + GFF3229 0.48 -0.9
206,659 + GFF3229 0.48 +1.3
206,668 + GFF3229 0.49 -0.9
206,676 - GFF3229 0.49 -1.1
206,696 + GFF3229 0.50 -0.3
206,875 + GFF3229 0.57 -0.3
207,110 - GFF3229 0.66 -0.6
207,118 + GFF3229 0.66 -1.3
207,118 + GFF3229 0.66 +1.0
207,119 - GFF3229 0.66 +0.1
207,256 + GFF3229 0.71 -0.6
207,448 - GFF3229 0.78 -0.3
207,451 + GFF3229 0.79 +0.9
207,451 + GFF3229 0.79 +1.3
207,451 + GFF3229 0.79 -0.6
207,451 + GFF3229 0.79 +0.1
207,452 - GFF3229 0.79 +0.7
207,494 - GFF3229 0.80 -0.3
207,494 - GFF3229 0.80 +0.7
207,494 - GFF3229 0.80 -0.3
207,496 + GFF3229 0.80 +0.7
207,496 + GFF3229 0.80 -0.1
207,497 - GFF3229 0.80 +0.1
207,596 + GFF3229 0.84 -0.6
207,597 - GFF3229 0.84 +0.7
207,859 - +1.7
208,048 + +0.7
208,528 + GFF3230 0.68 +0.4
208,563 + GFF3230 0.72 -0.5
208,564 - GFF3230 0.72 +0.7
208,564 - GFF3230 0.72 -1.4
208,564 - GFF3230 0.72 +0.2
208,564 - GFF3230 0.72 -0.2
208,564 - GFF3230 0.72 -2.0
208,650 + GFF3230 0.84 -0.7
208,650 + GFF3230 0.84 +0.1
208,651 - GFF3230 0.84 +0.4
208,651 - GFF3230 0.84 -0.4
208,919 + -1.3
208,919 + -0.7

Or see this region's nucleotide sequence