Strain Fitness in Pseudomonas sp. DMC3 around GFF3219

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3218 and GFF3219 overlap by 1 nucleotidesGFF3219 and GFF3220 are separated by 95 nucleotidesGFF3220 and GFF3221 are separated by 12 nucleotides GFF3218 - DNA mismatch repair protein MutL, at 190,348 to 192,255 GFF3218 GFF3219 - tRNA dimethylallyltransferase, at 192,255 to 193,226 GFF3219 GFF3220 - RNA-binding protein Hfq, at 193,322 to 193,588 GFF3220 GFF3221 - GTPase HflX, at 193,601 to 194,902 GFF3221 Position (kb) 192 193 194Strain fitness (log2 ratio) -2 -1 0 1at 191.363 kb on + strand, within GFF3218at 191.542 kb on + strand, within GFF3218at 191.543 kb on - strand, within GFF3218at 191.543 kb on - strand, within GFF3218at 191.548 kb on + strand, within GFF3218at 191.554 kb on + strand, within GFF3218at 191.555 kb on - strand, within GFF3218at 191.555 kb on - strand, within GFF3218at 191.555 kb on - strand, within GFF3218at 191.555 kb on - strand, within GFF3218at 191.605 kb on + strand, within GFF3218at 191.606 kb on - strand, within GFF3218at 191.670 kb on + strand, within GFF3218at 191.686 kb on + strand, within GFF3218at 191.713 kb on + strand, within GFF3218at 191.713 kb on + strand, within GFF3218at 191.713 kb on + strand, within GFF3218at 191.713 kb on + strand, within GFF3218at 191.714 kb on - strand, within GFF3218at 191.714 kb on - strand, within GFF3218at 191.715 kb on + strand, within GFF3218at 191.715 kb on + strand, within GFF3218at 191.715 kb on + strand, within GFF3218at 191.782 kb on + strand, within GFF3218at 191.782 kb on + strand, within GFF3218at 191.782 kb on + strand, within GFF3218at 191.782 kb on + strand, within GFF3218at 191.782 kb on + strand, within GFF3218at 191.782 kb on + strand, within GFF3218at 191.783 kb on - strand, within GFF3218at 191.783 kb on - strand, within GFF3218at 192.031 kb on + strand, within GFF3218at 192.031 kb on + strand, within GFF3218at 192.031 kb on + strand, within GFF3218at 192.031 kb on + strand, within GFF3218at 192.432 kb on + strand, within GFF3219at 192.570 kb on + strand, within GFF3219at 192.573 kb on + strand, within GFF3219at 192.573 kb on + strand, within GFF3219at 192.573 kb on + strand, within GFF3219at 192.573 kb on + strand, within GFF3219at 192.573 kb on + strand, within GFF3219at 192.573 kb on + strand, within GFF3219at 192.573 kb on + strand, within GFF3219at 192.573 kb on + strand, within GFF3219at 192.574 kb on - strand, within GFF3219at 192.574 kb on - strand, within GFF3219at 192.574 kb on - strand, within GFF3219at 192.574 kb on - strand, within GFF3219at 192.574 kb on - strand, within GFF3219at 192.630 kb on - strand, within GFF3219at 192.818 kb on + strand, within GFF3219at 192.818 kb on + strand, within GFF3219at 192.856 kb on - strand, within GFF3219at 192.856 kb on - strand, within GFF3219at 192.857 kb on + strand, within GFF3219at 192.857 kb on + strand, within GFF3219at 192.858 kb on - strand, within GFF3219at 192.858 kb on - strand, within GFF3219at 192.858 kb on - strand, within GFF3219at 192.932 kb on + strand, within GFF3219at 192.932 kb on + strand, within GFF3219at 192.932 kb on + strand, within GFF3219at 192.933 kb on - strand, within GFF3219at 192.975 kb on - strand, within GFF3219at 193.007 kb on + strand, within GFF3219at 193.007 kb on + strand, within GFF3219at 193.008 kb on - strand, within GFF3219at 193.009 kb on + strand, within GFF3219at 193.009 kb on + strand, within GFF3219at 193.009 kb on + strand, within GFF3219at 193.009 kb on + strand, within GFF3219at 193.010 kb on - strand, within GFF3219at 193.010 kb on - strand, within GFF3219at 193.010 kb on - strand, within GFF3219at 193.010 kb on - strand, within GFF3219at 193.010 kb on - strand, within GFF3219at 193.018 kb on + strand, within GFF3219at 193.245 kb on + strandat 193.295 kb on + strandat 193.589 kb on + strandat 193.590 kb on - strandat 193.590 kb on - strandat 193.590 kb on - strandat 193.769 kb on + strand, within GFF3221at 193.770 kb on - strand, within GFF3221at 193.770 kb on - strand, within GFF3221at 193.770 kb on - strand, within GFF3221at 194.057 kb on - strand, within GFF3221at 194.198 kb on - strand, within GFF3221

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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191,363 + GFF3218 0.53 +0.5
191,542 + GFF3218 0.63 +0.0
191,543 - GFF3218 0.63 +0.1
191,543 - GFF3218 0.63 -1.1
191,548 + GFF3218 0.63 -0.2
191,554 + GFF3218 0.63 +0.1
191,555 - GFF3218 0.63 +0.5
191,555 - GFF3218 0.63 +0.4
191,555 - GFF3218 0.63 -0.6
191,555 - GFF3218 0.63 +0.6
191,605 + GFF3218 0.66 -0.4
191,606 - GFF3218 0.66 -1.9
191,670 + GFF3218 0.69 +0.4
191,686 + GFF3218 0.70 +1.0
191,713 + GFF3218 0.72 +0.3
191,713 + GFF3218 0.72 -0.2
191,713 + GFF3218 0.72 +0.8
191,713 + GFF3218 0.72 +0.4
191,714 - GFF3218 0.72 -0.6
191,714 - GFF3218 0.72 -1.2
191,715 + GFF3218 0.72 +0.1
191,715 + GFF3218 0.72 -0.6
191,715 + GFF3218 0.72 +0.5
191,782 + GFF3218 0.75 +1.2
191,782 + GFF3218 0.75 +0.1
191,782 + GFF3218 0.75 +0.7
191,782 + GFF3218 0.75 -0.5
191,782 + GFF3218 0.75 -0.5
191,782 + GFF3218 0.75 -1.1
191,783 - GFF3218 0.75 -1.7
191,783 - GFF3218 0.75 -0.6
192,031 + GFF3218 0.88 -1.4
192,031 + GFF3218 0.88 +0.3
192,031 + GFF3218 0.88 -1.2
192,031 + GFF3218 0.88 -1.0
192,432 + GFF3219 0.18 -0.3
192,570 + GFF3219 0.32 -1.4
192,573 + GFF3219 0.33 -0.9
192,573 + GFF3219 0.33 -1.7
192,573 + GFF3219 0.33 -0.6
192,573 + GFF3219 0.33 -0.1
192,573 + GFF3219 0.33 -0.3
192,573 + GFF3219 0.33 -0.6
192,573 + GFF3219 0.33 +0.5
192,573 + GFF3219 0.33 +0.7
192,574 - GFF3219 0.33 -1.3
192,574 - GFF3219 0.33 -0.4
192,574 - GFF3219 0.33 -1.9
192,574 - GFF3219 0.33 -2.3
192,574 - GFF3219 0.33 -0.0
192,630 - GFF3219 0.39 +0.7
192,818 + GFF3219 0.58 -1.1
192,818 + GFF3219 0.58 -2.4
192,856 - GFF3219 0.62 -0.3
192,856 - GFF3219 0.62 -0.9
192,857 + GFF3219 0.62 +0.9
192,857 + GFF3219 0.62 -0.1
192,858 - GFF3219 0.62 -0.3
192,858 - GFF3219 0.62 +1.0
192,858 - GFF3219 0.62 +0.3
192,932 + GFF3219 0.70 +0.9
192,932 + GFF3219 0.70 -0.3
192,932 + GFF3219 0.70 +1.6
192,933 - GFF3219 0.70 +1.3
192,975 - GFF3219 0.74 -0.7
193,007 + GFF3219 0.77 +0.7
193,007 + GFF3219 0.77 -1.0
193,008 - GFF3219 0.77 -1.6
193,009 + GFF3219 0.78 +0.7
193,009 + GFF3219 0.78 -2.1
193,009 + GFF3219 0.78 -0.6
193,009 + GFF3219 0.78 -0.4
193,010 - GFF3219 0.78 -1.2
193,010 - GFF3219 0.78 +1.2
193,010 - GFF3219 0.78 +1.7
193,010 - GFF3219 0.78 -0.9
193,010 - GFF3219 0.78 -0.4
193,018 + GFF3219 0.78 -1.6
193,245 + -0.3
193,295 + -1.1
193,589 + -0.0
193,590 - -1.6
193,590 - +0.1
193,590 - -1.6
193,769 + GFF3221 0.13 +0.2
193,770 - GFF3221 0.13 -0.4
193,770 - GFF3221 0.13 +0.7
193,770 - GFF3221 0.13 +0.2
194,057 - GFF3221 0.35 -1.1
194,198 - GFF3221 0.46 -0.0

Or see this region's nucleotide sequence