Strain Fitness in Pseudomonas sp. DMC3 around GFF3199

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3197 and GFF3198 are separated by 54 nucleotidesGFF3198 and GFF3199 overlap by 1 nucleotidesGFF3199 and GFF3200 are separated by 42 nucleotides GFF3197 - Cyclic-di-GMP receptor FimW, at 164,219 to 165,979 GFF3197 GFF3198 - Phosphatidylserine decarboxylase proenzyme, at 166,034 to 166,894 GFF3198 GFF3199 - Thiosulfate sulfurtransferase, at 166,894 to 167,727 GFF3199 GFF3200 - hypothetical protein, at 167,770 to 169,308 GFF3200 Position (kb) 166 167 168Strain fitness (log2 ratio) -2 -1 0 1at 166.930 kb on - strandat 166.930 kb on - strandat 167.009 kb on + strand, within GFF3199at 167.009 kb on + strand, within GFF3199at 167.010 kb on - strand, within GFF3199at 167.010 kb on - strand, within GFF3199at 167.207 kb on + strand, within GFF3199at 167.271 kb on - strand, within GFF3199at 167.389 kb on + strand, within GFF3199at 167.389 kb on + strand, within GFF3199at 167.389 kb on + strand, within GFF3199at 167.389 kb on + strand, within GFF3199at 167.389 kb on + strand, within GFF3199at 167.389 kb on + strand, within GFF3199at 167.389 kb on + strand, within GFF3199at 167.389 kb on + strand, within GFF3199at 167.390 kb on - strand, within GFF3199at 167.390 kb on - strand, within GFF3199at 167.390 kb on - strand, within GFF3199at 167.390 kb on - strand, within GFF3199at 167.390 kb on - strand, within GFF3199at 167.390 kb on - strand, within GFF3199at 167.390 kb on - strand, within GFF3199at 167.390 kb on - strand, within GFF3199at 167.390 kb on - strand, within GFF3199at 167.390 kb on - strand, within GFF3199at 167.391 kb on + strand, within GFF3199at 167.391 kb on + strand, within GFF3199at 167.391 kb on + strand, within GFF3199at 167.391 kb on + strand, within GFF3199at 167.391 kb on + strand, within GFF3199at 167.391 kb on + strand, within GFF3199at 167.391 kb on + strand, within GFF3199at 167.392 kb on - strand, within GFF3199at 167.392 kb on - strand, within GFF3199at 167.392 kb on - strand, within GFF3199at 167.392 kb on - strand, within GFF3199at 167.392 kb on - strand, within GFF3199at 167.392 kb on - strand, within GFF3199at 167.392 kb on - strand, within GFF3199at 167.392 kb on - strand, within GFF3199at 167.392 kb on - strand, within GFF3199at 167.393 kb on + strand, within GFF3199at 167.393 kb on + strand, within GFF3199at 167.393 kb on + strand, within GFF3199at 167.393 kb on + strand, within GFF3199at 167.393 kb on + strand, within GFF3199at 167.394 kb on - strand, within GFF3199at 167.394 kb on - strand, within GFF3199at 167.394 kb on - strand, within GFF3199at 167.394 kb on - strand, within GFF3199at 167.394 kb on - strand, within GFF3199at 167.394 kb on - strand, within GFF3199at 167.394 kb on - strand, within GFF3199at 167.394 kb on - strand, within GFF3199at 167.394 kb on - strand, within GFF3199at 167.399 kb on + strand, within GFF3199at 167.399 kb on + strand, within GFF3199at 167.400 kb on - strand, within GFF3199at 167.400 kb on - strand, within GFF3199at 167.400 kb on - strand, within GFF3199at 167.400 kb on - strand, within GFF3199at 167.400 kb on - strand, within GFF3199at 167.400 kb on - strand, within GFF3199at 167.400 kb on - strand, within GFF3199at 167.400 kb on - strand, within GFF3199at 167.469 kb on - strand, within GFF3199at 167.469 kb on - strand, within GFF3199at 167.469 kb on - strand, within GFF3199at 167.469 kb on - strand, within GFF3199at 167.477 kb on + strand, within GFF3199at 167.477 kb on + strand, within GFF3199at 167.478 kb on - strand, within GFF3199at 167.478 kb on - strand, within GFF3199at 167.761 kb on - strandat 167.787 kb on + strandat 167.788 kb on - strandat 167.839 kb on + strandat 167.840 kb on - strandat 167.840 kb on - strandat 167.840 kb on - strandat 167.881 kb on + strandat 167.881 kb on + strandat 167.881 kb on + strandat 167.881 kb on + strandat 167.881 kb on + strandat 167.881 kb on + strandat 167.881 kb on + strandat 167.881 kb on + strandat 167.882 kb on - strandat 167.882 kb on - strandat 167.968 kb on + strand, within GFF3200at 167.969 kb on - strand, within GFF3200at 167.969 kb on - strand, within GFF3200at 168.444 kb on - strand, within GFF3200at 168.444 kb on - strand, within GFF3200at 168.458 kb on + strand, within GFF3200at 168.458 kb on + strand, within GFF3200at 168.458 kb on + strand, within GFF3200at 168.562 kb on + strand, within GFF3200at 168.671 kb on + strand, within GFF3200at 168.671 kb on + strand, within GFF3200

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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166,930 - -0.3
166,930 - -0.7
167,009 + GFF3199 0.14 -0.6
167,009 + GFF3199 0.14 -1.0
167,010 - GFF3199 0.14 +0.7
167,010 - GFF3199 0.14 -0.7
167,207 + GFF3199 0.38 -0.3
167,271 - GFF3199 0.45 +0.7
167,389 + GFF3199 0.59 -0.9
167,389 + GFF3199 0.59 -1.3
167,389 + GFF3199 0.59 -0.9
167,389 + GFF3199 0.59 -1.7
167,389 + GFF3199 0.59 -0.4
167,389 + GFF3199 0.59 +1.3
167,389 + GFF3199 0.59 -1.3
167,389 + GFF3199 0.59 -0.3
167,390 - GFF3199 0.59 -0.8
167,390 - GFF3199 0.59 +0.3
167,390 - GFF3199 0.59 -0.3
167,390 - GFF3199 0.59 +0.7
167,390 - GFF3199 0.59 -0.4
167,390 - GFF3199 0.59 -0.7
167,390 - GFF3199 0.59 -0.6
167,390 - GFF3199 0.59 -0.5
167,390 - GFF3199 0.59 -1.7
167,390 - GFF3199 0.59 -0.3
167,391 + GFF3199 0.60 -0.3
167,391 + GFF3199 0.60 -0.3
167,391 + GFF3199 0.60 -1.1
167,391 + GFF3199 0.60 -0.3
167,391 + GFF3199 0.60 -0.6
167,391 + GFF3199 0.60 -1.4
167,391 + GFF3199 0.60 -0.6
167,392 - GFF3199 0.60 -0.1
167,392 - GFF3199 0.60 -1.3
167,392 - GFF3199 0.60 +0.1
167,392 - GFF3199 0.60 -0.5
167,392 - GFF3199 0.60 -0.4
167,392 - GFF3199 0.60 -1.0
167,392 - GFF3199 0.60 -0.5
167,392 - GFF3199 0.60 -0.3
167,392 - GFF3199 0.60 -0.0
167,393 + GFF3199 0.60 -1.1
167,393 + GFF3199 0.60 -1.3
167,393 + GFF3199 0.60 -0.3
167,393 + GFF3199 0.60 -1.1
167,393 + GFF3199 0.60 -0.3
167,394 - GFF3199 0.60 -0.7
167,394 - GFF3199 0.60 +0.4
167,394 - GFF3199 0.60 -1.1
167,394 - GFF3199 0.60 +0.5
167,394 - GFF3199 0.60 -0.3
167,394 - GFF3199 0.60 -1.9
167,394 - GFF3199 0.60 +0.6
167,394 - GFF3199 0.60 -0.9
167,394 - GFF3199 0.60 +1.1
167,399 + GFF3199 0.61 -0.9
167,399 + GFF3199 0.61 -1.1
167,400 - GFF3199 0.61 -0.1
167,400 - GFF3199 0.61 -0.3
167,400 - GFF3199 0.61 -1.0
167,400 - GFF3199 0.61 -1.0
167,400 - GFF3199 0.61 -1.0
167,400 - GFF3199 0.61 -0.9
167,400 - GFF3199 0.61 -0.2
167,400 - GFF3199 0.61 -0.5
167,469 - GFF3199 0.69 +0.4
167,469 - GFF3199 0.69 -0.9
167,469 - GFF3199 0.69 +0.2
167,469 - GFF3199 0.69 -1.1
167,477 + GFF3199 0.70 -0.3
167,477 + GFF3199 0.70 -0.3
167,478 - GFF3199 0.70 -0.6
167,478 - GFF3199 0.70 -0.0
167,761 - +0.1
167,787 + -1.4
167,788 - +0.8
167,839 + -0.6
167,840 - +0.3
167,840 - -0.3
167,840 - -0.3
167,881 + -1.0
167,881 + -0.5
167,881 + -0.7
167,881 + +0.9
167,881 + +0.5
167,881 + +1.5
167,881 + -2.2
167,881 + -0.6
167,882 - -0.3
167,882 - -0.1
167,968 + GFF3200 0.13 -0.3
167,969 - GFF3200 0.13 +0.3
167,969 - GFF3200 0.13 -1.8
168,444 - GFF3200 0.44 -0.2
168,444 - GFF3200 0.44 -0.7
168,458 + GFF3200 0.45 +0.3
168,458 + GFF3200 0.45 +0.1
168,458 + GFF3200 0.45 -0.6
168,562 + GFF3200 0.51 +0.9
168,671 + GFF3200 0.59 -0.9
168,671 + GFF3200 0.59 -0.3

Or see this region's nucleotide sequence