Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3083 and GFF3084 are separated by 257 nucleotides GFF3084 and GFF3085 are separated by 77 nucleotides
GFF3083 - Poly(3-hydroxyalkanoate) polymerase subunit PhaC, at 22,835 to 24,514
GFF3083
GFF3084 - hypothetical protein, at 24,772 to 25,143
GFF3084
GFF3085 - ATP-dependent protease ATPase subunit HslU, at 25,221 to 26,558
GFF3085
Position (kb) 24
25
26 Strain fitness (log2 ratio) -2
-1
0
1 at 23.829 kb on + strand, within GFF3083 at 23.830 kb on - strand, within GFF3083 at 23.830 kb on - strand, within GFF3083 at 24.225 kb on + strand, within GFF3083 at 24.226 kb on - strand, within GFF3083 at 24.226 kb on - strand, within GFF3083 at 24.226 kb on - strand, within GFF3083 at 24.237 kb on + strand, within GFF3083 at 24.246 kb on + strand, within GFF3083 at 24.246 kb on + strand, within GFF3083 at 24.246 kb on + strand, within GFF3083 at 24.246 kb on + strand, within GFF3083 at 24.247 kb on - strand, within GFF3083 at 24.247 kb on - strand, within GFF3083 at 24.247 kb on - strand, within GFF3083 at 24.249 kb on - strand, within GFF3083 at 24.483 kb on + strand at 24.483 kb on + strand at 24.483 kb on + strand at 24.483 kb on + strand at 24.483 kb on + strand at 24.484 kb on - strand at 24.484 kb on - strand at 24.484 kb on - strand at 24.484 kb on - strand at 24.499 kb on + strand at 24.516 kb on + strand at 24.517 kb on - strand at 24.586 kb on + strand at 24.586 kb on + strand at 24.586 kb on + strand at 24.586 kb on + strand at 24.587 kb on - strand at 24.587 kb on - strand at 24.587 kb on - strand at 24.587 kb on - strand at 24.587 kb on - strand at 24.587 kb on - strand at 24.614 kb on + strand at 24.614 kb on + strand at 24.614 kb on + strand at 24.615 kb on - strand at 24.615 kb on - strand at 24.615 kb on - strand at 24.615 kb on - strand at 24.623 kb on + strand at 24.624 kb on - strand at 24.624 kb on - strand at 24.710 kb on - strand at 24.710 kb on - strand at 24.738 kb on + strand at 24.774 kb on - strand at 24.842 kb on + strand, within GFF3084 at 24.842 kb on + strand, within GFF3084 at 24.843 kb on - strand, within GFF3084 at 24.882 kb on - strand, within GFF3084 at 24.882 kb on - strand, within GFF3084 at 24.888 kb on - strand, within GFF3084 at 24.944 kb on + strand, within GFF3084 at 24.944 kb on + strand, within GFF3084 at 24.944 kb on + strand, within GFF3084 at 24.945 kb on - strand, within GFF3084 at 24.945 kb on - strand, within GFF3084 at 24.945 kb on - strand, within GFF3084 at 24.945 kb on - strand, within GFF3084 at 24.945 kb on - strand, within GFF3084 at 24.945 kb on - strand, within GFF3084 at 24.945 kb on - strand, within GFF3084 at 24.945 kb on - strand, within GFF3084 at 25.070 kb on + strand, within GFF3084 at 25.071 kb on - strand, within GFF3084 at 25.071 kb on - strand, within GFF3084 at 25.071 kb on - strand, within GFF3084 at 25.088 kb on + strand, within GFF3084 at 25.088 kb on + strand, within GFF3084 at 25.088 kb on + strand, within GFF3084 at 25.157 kb on + strand at 25.157 kb on + strand at 25.158 kb on - strand at 25.158 kb on - strand at 25.168 kb on + strand at 25.168 kb on + strand at 25.169 kb on - strand at 25.169 kb on - strand at 25.169 kb on - strand at 25.183 kb on + strand at 25.183 kb on + strand at 25.183 kb on + strand at 25.184 kb on - strand at 25.184 kb on - strand at 25.202 kb on + strand at 25.202 kb on + strand at 25.202 kb on + strand at 25.202 kb on + strand at 25.203 kb on - strand at 25.209 kb on + strand at 25.209 kb on + strand at 25.210 kb on - strand at 25.210 kb on - strand at 25.222 kb on + strand at 25.222 kb on + strand at 25.232 kb on - strand at 25.282 kb on + strand at 25.282 kb on + strand at 25.283 kb on - strand at 25.502 kb on - strand, within GFF3085 at 25.502 kb on - strand, within GFF3085 at 25.691 kb on + strand, within GFF3085 at 25.734 kb on + strand, within GFF3085 at 25.735 kb on - strand, within GFF3085 at 25.735 kb on - strand, within GFF3085 at 26.099 kb on + strand, within GFF3085 at 26.100 kb on - strand, within GFF3085
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 23,829 + GFF3083 0.59 -1.1 23,830 - GFF3083 0.59 -0.8 23,830 - GFF3083 0.59 +0.4 24,225 + GFF3083 0.83 +0.2 24,226 - GFF3083 0.83 +0.2 24,226 - GFF3083 0.83 +0.0 24,226 - GFF3083 0.83 +1.2 24,237 + GFF3083 0.83 +1.4 24,246 + GFF3083 0.84 -0.2 24,246 + GFF3083 0.84 -0.6 24,246 + GFF3083 0.84 -0.3 24,246 + GFF3083 0.84 +0.2 24,247 - GFF3083 0.84 -0.6 24,247 - GFF3083 0.84 -0.4 24,247 - GFF3083 0.84 -0.3 24,249 - GFF3083 0.84 +0.4 24,483 + +0.4 24,483 + +0.5 24,483 + -0.2 24,483 + -0.5 24,483 + +0.9 24,484 - +0.1 24,484 - +0.4 24,484 - +0.0 24,484 - +0.6 24,499 + +0.6 24,516 + -1.4 24,517 - -0.5 24,586 + +0.0 24,586 + -1.1 24,586 + +0.1 24,586 + +1.2 24,587 - -0.3 24,587 - -0.2 24,587 - -0.2 24,587 - +0.2 24,587 - +1.0 24,587 - -0.9 24,614 + +0.7 24,614 + +0.0 24,614 + -0.3 24,615 - +1.4 24,615 - +1.1 24,615 - +0.1 24,615 - +0.1 24,623 + +1.0 24,624 - -0.7 24,624 - -1.6 24,710 - -0.4 24,710 - -1.4 24,738 + +0.0 24,774 - -0.0 24,842 + GFF3084 0.19 -1.3 24,842 + GFF3084 0.19 -0.1 24,843 - GFF3084 0.19 +0.4 24,882 - GFF3084 0.30 -0.9 24,882 - GFF3084 0.30 +0.4 24,888 - GFF3084 0.31 -0.6 24,944 + GFF3084 0.46 -0.1 24,944 + GFF3084 0.46 -0.3 24,944 + GFF3084 0.46 -0.3 24,945 - GFF3084 0.47 +1.7 24,945 - GFF3084 0.47 -0.4 24,945 - GFF3084 0.47 +0.4 24,945 - GFF3084 0.47 -0.9 24,945 - GFF3084 0.47 -0.3 24,945 - GFF3084 0.47 -0.4 24,945 - GFF3084 0.47 +0.9 24,945 - GFF3084 0.47 -0.6 25,070 + GFF3084 0.80 +1.0 25,071 - GFF3084 0.80 -0.3 25,071 - GFF3084 0.80 -0.3 25,071 - GFF3084 0.80 -0.4 25,088 + GFF3084 0.85 +0.1 25,088 + GFF3084 0.85 -1.4 25,088 + GFF3084 0.85 +0.1 25,157 + +0.1 25,157 + -0.4 25,158 - -0.2 25,158 - -1.0 25,168 + +1.3 25,168 + -1.0 25,169 - +0.7 25,169 - +0.2 25,169 - -1.4 25,183 + +0.0 25,183 + -0.9 25,183 + -0.1 25,184 - +0.0 25,184 - -1.0 25,202 + -0.0 25,202 + -0.3 25,202 + +0.3 25,202 + +0.6 25,203 - -2.1 25,209 + +0.2 25,209 + +0.1 25,210 - -1.1 25,210 - +0.4 25,222 + +0.5 25,222 + -1.3 25,232 - +0.1 25,282 + -0.2 25,282 + -0.3 25,283 - -1.1 25,502 - GFF3085 0.21 +1.1 25,502 - GFF3085 0.21 -0.9 25,691 + GFF3085 0.35 -0.7 25,734 + GFF3085 0.38 +0.2 25,735 - GFF3085 0.38 -0.7 25,735 - GFF3085 0.38 +1.7 26,099 + GFF3085 0.66 +0.6 26,100 - GFF3085 0.66 -0.5
Or see this region's nucleotide sequence