Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3070 and GFF3071 are separated by 10 nucleotides GFF3071 and GFF3072 are separated by 25 nucleotides GFF3072 and GFF3073 overlap by 8 nucleotides GFF3073 and GFF3074 are separated by 120 nucleotides
GFF3070 - Sec-independent protein translocase protein TatB, at 12,434 to 12,880
GFF3070
GFF3071 - Sec-independent protein translocase protein TatA, at 12,891 to 13,172
GFF3071
GFF3072 - Phosphoribosyl-ATP pyrophosphatase, at 13,198 to 13,530
GFF3072
GFF3073 - Phosphoribosyl-AMP cyclohydrolase, at 13,523 to 13,924
GFF3073
GFF3074 - putative protein kinase UbiB, at 14,045 to 15,649
GFF3074
Position (kb) 13
14 Strain fitness (log2 ratio) -2
-1
0
1 at 12.552 kb on - strand, within GFF3070 at 12.552 kb on - strand, within GFF3070 at 12.552 kb on - strand, within GFF3070 at 12.552 kb on - strand, within GFF3070 at 12.680 kb on - strand, within GFF3070 at 12.882 kb on - strand at 12.882 kb on - strand at 13.017 kb on - strand, within GFF3071 at 13.337 kb on + strand, within GFF3072 at 13.337 kb on + strand, within GFF3072 at 13.386 kb on + strand, within GFF3072 at 13.445 kb on + strand, within GFF3072 at 13.460 kb on + strand, within GFF3072 at 13.460 kb on + strand, within GFF3072 at 13.460 kb on + strand, within GFF3072 at 13.460 kb on + strand, within GFF3072 at 13.461 kb on - strand, within GFF3072 at 13.461 kb on - strand, within GFF3072 at 13.461 kb on - strand, within GFF3072 at 13.461 kb on - strand, within GFF3072 at 13.499 kb on - strand at 13.499 kb on - strand at 13.548 kb on + strand at 13.548 kb on + strand at 13.549 kb on - strand at 13.549 kb on - strand at 13.553 kb on - strand at 13.776 kb on + strand, within GFF3073 at 13.776 kb on + strand, within GFF3073 at 13.777 kb on - strand, within GFF3073 at 13.842 kb on - strand, within GFF3073 at 13.973 kb on + strand at 14.023 kb on + strand at 14.023 kb on + strand at 14.023 kb on + strand at 14.024 kb on - strand at 14.024 kb on - strand at 14.024 kb on - strand at 14.024 kb on - strand at 14.025 kb on + strand at 14.025 kb on + strand at 14.025 kb on + strand at 14.026 kb on - strand at 14.026 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 12,552 - GFF3070 0.26 +0.2 12,552 - GFF3070 0.26 -0.4 12,552 - GFF3070 0.26 +0.1 12,552 - GFF3070 0.26 -1.9 12,680 - GFF3070 0.55 +0.7 12,882 - +0.1 12,882 - -0.3 13,017 - GFF3071 0.45 +0.1 13,337 + GFF3072 0.42 +1.3 13,337 + GFF3072 0.42 -0.3 13,386 + GFF3072 0.56 -0.4 13,445 + GFF3072 0.74 -0.2 13,460 + GFF3072 0.79 -0.9 13,460 + GFF3072 0.79 -0.9 13,460 + GFF3072 0.79 -0.2 13,460 + GFF3072 0.79 -0.6 13,461 - GFF3072 0.79 -0.4 13,461 - GFF3072 0.79 +0.0 13,461 - GFF3072 0.79 +0.1 13,461 - GFF3072 0.79 -0.1 13,499 - -0.3 13,499 - +0.3 13,548 + +0.4 13,548 + +1.7 13,549 - -0.4 13,549 - +0.5 13,553 - -1.2 13,776 + GFF3073 0.63 -1.1 13,776 + GFF3073 0.63 -2.1 13,777 - GFF3073 0.63 -0.3 13,842 - GFF3073 0.79 -0.3 13,973 + -0.4 14,023 + +0.2 14,023 + -0.4 14,023 + +0.4 14,024 - -0.1 14,024 - -0.2 14,024 - -1.2 14,024 - +0.2 14,025 + -0.1 14,025 + -0.0 14,025 + +1.1 14,026 - -0.3 14,026 - -0.2
Or see this region's nucleotide sequence