Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2965 and GFF2966 are separated by 204 nucleotides GFF2966 and GFF2967 overlap by 4 nucleotides GFF2967 and GFF2968 are separated by 12 nucleotides GFF2968 and GFF2969 are separated by 215 nucleotides
GFF2965 - ATP-dependent Clp protease proteolytic subunit, at 336,835 to 337,386
GFF2965
GFF2966 - hypothetical protein, at 337,591 to 337,848
GFF2966
GFF2967 - hypothetical protein, at 337,845 to 338,096
GFF2967
GFF2968 - hypothetical protein, at 338,109 to 338,522
GFF2968
GFF2969 - hypothetical protein, at 338,738 to 339,118
GFF2969
Position (kb) 337
338
339 Strain fitness (log2 ratio) -2
-1
0
1 at 336.976 kb on + strand, within GFF2965 at 336.991 kb on + strand, within GFF2965 at 336.991 kb on + strand, within GFF2965 at 336.991 kb on + strand, within GFF2965 at 336.991 kb on + strand, within GFF2965 at 336.991 kb on + strand, within GFF2965 at 336.991 kb on + strand, within GFF2965 at 336.991 kb on + strand, within GFF2965 at 336.991 kb on + strand, within GFF2965 at 336.991 kb on + strand, within GFF2965 at 336.991 kb on + strand, within GFF2965 at 336.991 kb on + strand, within GFF2965 at 336.992 kb on - strand, within GFF2965 at 336.992 kb on - strand, within GFF2965 at 336.992 kb on - strand, within GFF2965 at 336.992 kb on - strand, within GFF2965 at 336.992 kb on - strand, within GFF2965 at 336.992 kb on - strand, within GFF2965 at 336.992 kb on - strand, within GFF2965 at 336.992 kb on - strand, within GFF2965 at 336.992 kb on - strand, within GFF2965 at 336.992 kb on - strand, within GFF2965 at 336.993 kb on + strand, within GFF2965 at 336.993 kb on + strand, within GFF2965 at 336.994 kb on - strand, within GFF2965 at 336.994 kb on - strand, within GFF2965 at 336.994 kb on - strand, within GFF2965 at 336.994 kb on - strand, within GFF2965 at 336.994 kb on - strand, within GFF2965 at 337.014 kb on + strand, within GFF2965 at 337.014 kb on + strand, within GFF2965 at 337.014 kb on + strand, within GFF2965 at 337.015 kb on - strand, within GFF2965 at 337.015 kb on - strand, within GFF2965 at 337.015 kb on - strand, within GFF2965 at 337.015 kb on - strand, within GFF2965 at 337.015 kb on - strand, within GFF2965 at 337.098 kb on + strand, within GFF2965 at 337.174 kb on + strand, within GFF2965 at 337.174 kb on + strand, within GFF2965 at 337.192 kb on + strand, within GFF2965 at 337.192 kb on + strand, within GFF2965 at 337.192 kb on + strand, within GFF2965 at 337.193 kb on - strand, within GFF2965 at 337.230 kb on + strand, within GFF2965 at 337.268 kb on - strand, within GFF2965 at 337.323 kb on + strand, within GFF2965 at 337.323 kb on + strand, within GFF2965 at 337.324 kb on - strand, within GFF2965 at 337.324 kb on - strand, within GFF2965 at 337.324 kb on - strand, within GFF2965 at 337.326 kb on + strand, within GFF2965 at 337.327 kb on - strand, within GFF2965 at 337.379 kb on - strand at 337.379 kb on - strand at 337.401 kb on + strand at 337.412 kb on - strand at 337.468 kb on - strand at 337.493 kb on + strand at 337.493 kb on + strand at 337.544 kb on + strand at 337.560 kb on + strand at 337.560 kb on + strand at 337.561 kb on - strand at 337.561 kb on - strand at 337.561 kb on - strand at 337.573 kb on - strand at 337.590 kb on + strand at 337.590 kb on + strand at 337.590 kb on + strand at 337.591 kb on - strand at 337.591 kb on - strand at 337.591 kb on - strand at 337.609 kb on + strand at 337.609 kb on + strand at 337.610 kb on - strand at 337.610 kb on - strand at 337.621 kb on + strand, within GFF2966 at 337.622 kb on - strand, within GFF2966 at 337.814 kb on + strand, within GFF2966 at 337.815 kb on - strand, within GFF2966 at 337.950 kb on + strand, within GFF2967 at 338.009 kb on + strand, within GFF2967 at 338.009 kb on + strand, within GFF2967 at 338.009 kb on + strand, within GFF2967 at 338.010 kb on - strand, within GFF2967 at 338.015 kb on + strand, within GFF2967 at 338.016 kb on - strand, within GFF2967 at 338.043 kb on + strand, within GFF2967 at 338.152 kb on + strand, within GFF2968 at 338.152 kb on + strand, within GFF2968 at 338.152 kb on + strand, within GFF2968 at 338.153 kb on - strand, within GFF2968 at 338.153 kb on - strand, within GFF2968 at 338.153 kb on - strand, within GFF2968 at 338.153 kb on - strand, within GFF2968 at 338.153 kb on - strand, within GFF2968 at 338.153 kb on - strand, within GFF2968 at 338.153 kb on - strand, within GFF2968 at 338.244 kb on + strand, within GFF2968 at 338.273 kb on - strand, within GFF2968 at 338.296 kb on + strand, within GFF2968 at 338.296 kb on + strand, within GFF2968 at 338.296 kb on + strand, within GFF2968 at 338.296 kb on + strand, within GFF2968 at 338.296 kb on + strand, within GFF2968 at 338.296 kb on + strand, within GFF2968 at 338.296 kb on + strand, within GFF2968 at 338.296 kb on + strand, within GFF2968 at 338.297 kb on - strand, within GFF2968 at 338.297 kb on - strand, within GFF2968 at 338.297 kb on - strand, within GFF2968 at 338.518 kb on + strand at 338.518 kb on + strand at 338.518 kb on + strand at 338.518 kb on + strand at 338.518 kb on + strand at 338.519 kb on - strand at 338.519 kb on - strand at 338.519 kb on - strand at 338.519 kb on - strand at 338.519 kb on - strand at 338.519 kb on - strand at 338.519 kb on - strand at 338.543 kb on - strand at 338.543 kb on - strand at 338.543 kb on - strand at 338.543 kb on - strand at 338.560 kb on + strand at 338.561 kb on - strand at 338.578 kb on + strand at 338.578 kb on + strand at 338.578 kb on + strand at 338.578 kb on + strand at 338.579 kb on - strand at 338.579 kb on - strand at 338.579 kb on - strand at 338.622 kb on + strand at 338.639 kb on + strand at 338.639 kb on + strand at 338.639 kb on + strand at 338.639 kb on + strand at 338.639 kb on + strand at 338.639 kb on + strand at 338.639 kb on + strand at 338.639 kb on + strand at 338.639 kb on + strand at 338.639 kb on + strand at 338.639 kb on + strand at 338.639 kb on + strand at 338.639 kb on + strand at 338.639 kb on + strand at 338.639 kb on + strand at 338.639 kb on + strand at 338.639 kb on + strand at 338.639 kb on + strand at 338.640 kb on - strand at 338.640 kb on - strand at 338.640 kb on - strand at 338.640 kb on - strand at 338.640 kb on - strand at 338.640 kb on - strand at 338.640 kb on - strand at 338.640 kb on - strand at 338.640 kb on - strand at 338.640 kb on - strand at 338.640 kb on - strand at 338.647 kb on + strand at 338.647 kb on + strand at 338.647 kb on + strand at 338.647 kb on + strand at 338.648 kb on - strand at 338.648 kb on - strand at 338.649 kb on + strand at 338.649 kb on + strand at 338.649 kb on + strand at 338.649 kb on + strand at 338.650 kb on - strand at 338.650 kb on - strand at 338.650 kb on - strand at 338.650 kb on - strand at 338.650 kb on - strand at 338.650 kb on - strand at 338.650 kb on - strand at 338.650 kb on - strand at 338.650 kb on - strand at 338.697 kb on + strand at 338.966 kb on + strand, within GFF2969 at 338.966 kb on + strand, within GFF2969 at 338.966 kb on + strand, within GFF2969 at 338.966 kb on + strand, within GFF2969 at 338.967 kb on - strand, within GFF2969 at 339.008 kb on + strand, within GFF2969 at 339.008 kb on + strand, within GFF2969 at 339.008 kb on + strand, within GFF2969 at 339.008 kb on + strand, within GFF2969 at 339.009 kb on - strand, within GFF2969 at 339.009 kb on - strand, within GFF2969 at 339.009 kb on - strand, within GFF2969 at 339.018 kb on - strand, within GFF2969
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 336,976 + GFF2965 0.26 -0.3 336,991 + GFF2965 0.28 -0.1 336,991 + GFF2965 0.28 +0.6 336,991 + GFF2965 0.28 +0.2 336,991 + GFF2965 0.28 -0.9 336,991 + GFF2965 0.28 -0.0 336,991 + GFF2965 0.28 +0.2 336,991 + GFF2965 0.28 -0.2 336,991 + GFF2965 0.28 +0.6 336,991 + GFF2965 0.28 +0.1 336,991 + GFF2965 0.28 -0.4 336,991 + GFF2965 0.28 +0.4 336,992 - GFF2965 0.28 -0.1 336,992 - GFF2965 0.28 +0.4 336,992 - GFF2965 0.28 -0.0 336,992 - GFF2965 0.28 +0.1 336,992 - GFF2965 0.28 +0.1 336,992 - GFF2965 0.28 +0.3 336,992 - GFF2965 0.28 -0.2 336,992 - GFF2965 0.28 -1.0 336,992 - GFF2965 0.28 +0.6 336,992 - GFF2965 0.28 -0.5 336,993 + GFF2965 0.29 -0.6 336,993 + GFF2965 0.29 -1.4 336,994 - GFF2965 0.29 +0.1 336,994 - GFF2965 0.29 +0.4 336,994 - GFF2965 0.29 +1.1 336,994 - GFF2965 0.29 -0.6 336,994 - GFF2965 0.29 +0.5 337,014 + GFF2965 0.32 +0.5 337,014 + GFF2965 0.32 +0.8 337,014 + GFF2965 0.32 -1.4 337,015 - GFF2965 0.33 +0.1 337,015 - GFF2965 0.33 -0.2 337,015 - GFF2965 0.33 +0.1 337,015 - GFF2965 0.33 -2.2 337,015 - GFF2965 0.33 -0.6 337,098 + GFF2965 0.48 -0.2 337,174 + GFF2965 0.61 -0.3 337,174 + GFF2965 0.61 +0.9 337,192 + GFF2965 0.65 -0.6 337,192 + GFF2965 0.65 +0.4 337,192 + GFF2965 0.65 -0.6 337,193 - GFF2965 0.65 +1.2 337,230 + GFF2965 0.72 -1.0 337,268 - GFF2965 0.78 +1.5 337,323 + GFF2965 0.88 +1.0 337,323 + GFF2965 0.88 -0.3 337,324 - GFF2965 0.89 -0.7 337,324 - GFF2965 0.89 -0.6 337,324 - GFF2965 0.89 +0.5 337,326 + GFF2965 0.89 +0.5 337,327 - GFF2965 0.89 -0.4 337,379 - -0.3 337,379 - -0.8 337,401 + -1.4 337,412 - -0.2 337,468 - +1.1 337,493 + +0.2 337,493 + +0.0 337,544 + -0.7 337,560 + +1.2 337,560 + +0.1 337,561 - -2.6 337,561 - -0.5 337,561 - -1.4 337,573 - +0.4 337,590 + +0.1 337,590 + -0.5 337,590 + +0.0 337,591 - +0.2 337,591 - -0.1 337,591 - -0.6 337,609 + -1.0 337,609 + -0.2 337,610 - +0.6 337,610 - -0.1 337,621 + GFF2966 0.12 +0.2 337,622 - GFF2966 0.12 -0.3 337,814 + GFF2966 0.86 +0.9 337,815 - GFF2966 0.87 -1.3 337,950 + GFF2967 0.42 -0.9 338,009 + GFF2967 0.65 -0.7 338,009 + GFF2967 0.65 -0.4 338,009 + GFF2967 0.65 -0.9 338,010 - GFF2967 0.65 -1.7 338,015 + GFF2967 0.67 +0.1 338,016 - GFF2967 0.68 -0.4 338,043 + GFF2967 0.79 -0.1 338,152 + GFF2968 0.10 -0.4 338,152 + GFF2968 0.10 +0.7 338,152 + GFF2968 0.10 +0.5 338,153 - GFF2968 0.11 -1.6 338,153 - GFF2968 0.11 -0.4 338,153 - GFF2968 0.11 -0.7 338,153 - GFF2968 0.11 -0.3 338,153 - GFF2968 0.11 -0.5 338,153 - GFF2968 0.11 -0.8 338,153 - GFF2968 0.11 +0.1 338,244 + GFF2968 0.33 -0.9 338,273 - GFF2968 0.40 +0.0 338,296 + GFF2968 0.45 +0.6 338,296 + GFF2968 0.45 +0.2 338,296 + GFF2968 0.45 -0.3 338,296 + GFF2968 0.45 -0.9 338,296 + GFF2968 0.45 -0.9 338,296 + GFF2968 0.45 -1.2 338,296 + GFF2968 0.45 -0.2 338,296 + GFF2968 0.45 +0.4 338,297 - GFF2968 0.45 +0.3 338,297 - GFF2968 0.45 -1.3 338,297 - GFF2968 0.45 +0.1 338,518 + -0.4 338,518 + +0.2 338,518 + +0.3 338,518 + -0.9 338,518 + -0.9 338,519 - -0.3 338,519 - +0.5 338,519 - -0.3 338,519 - +0.3 338,519 - +0.1 338,519 - -0.2 338,519 - +0.8 338,543 - +1.1 338,543 - +0.7 338,543 - -0.8 338,543 - -1.2 338,560 + -1.6 338,561 - +0.2 338,578 + -1.1 338,578 + -0.8 338,578 + -0.2 338,578 + -0.0 338,579 - -0.4 338,579 - +0.7 338,579 - -0.6 338,622 + -0.9 338,639 + +0.3 338,639 + +0.4 338,639 + -1.4 338,639 + +0.1 338,639 + +0.7 338,639 + -1.2 338,639 + -0.4 338,639 + +0.0 338,639 + -0.3 338,639 + +0.8 338,639 + -0.5 338,639 + -0.6 338,639 + +1.1 338,639 + -0.3 338,639 + +0.4 338,639 + -0.7 338,639 + -0.6 338,639 + +0.7 338,640 - +0.5 338,640 - +0.1 338,640 - +1.3 338,640 - -0.0 338,640 - -0.1 338,640 - -0.9 338,640 - -0.8 338,640 - -0.4 338,640 - +0.3 338,640 - +0.3 338,640 - -0.1 338,647 + -1.7 338,647 + -0.9 338,647 + -1.7 338,647 + -0.2 338,648 - -0.2 338,648 - -0.1 338,649 + -0.1 338,649 + -0.0 338,649 + +0.3 338,649 + +1.4 338,650 - -0.1 338,650 - -1.5 338,650 - -0.9 338,650 - +0.6 338,650 - -0.4 338,650 - -0.6 338,650 - -0.2 338,650 - -0.2 338,650 - +0.3 338,697 + -1.6 338,966 + GFF2969 0.60 +0.2 338,966 + GFF2969 0.60 -0.6 338,966 + GFF2969 0.60 +0.2 338,966 + GFF2969 0.60 -0.1 338,967 - GFF2969 0.60 -0.1 339,008 + GFF2969 0.71 -0.2 339,008 + GFF2969 0.71 +0.0 339,008 + GFF2969 0.71 +1.1 339,008 + GFF2969 0.71 -0.7 339,009 - GFF2969 0.71 -0.7 339,009 - GFF2969 0.71 -1.3 339,009 - GFF2969 0.71 -0.2 339,018 - GFF2969 0.73 +0.0
Or see this region's nucleotide sequence