Strain Fitness in Pseudomonas sp. DMC3 around GFF2956

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2955 and GFF2956 are separated by 105 nucleotidesGFF2956 and GFF2957 are separated by 133 nucleotidesGFF2957 and GFF2958 are separated by 0 nucleotides GFF2955 - hypothetical protein, at 327,402 to 329,846 GFF2955 GFF2956 - Nitronate monooxygenase, at 329,952 to 331,016 GFF2956 GFF2957 - Molybdate-binding protein ModA, at 331,150 to 331,917 GFF2957 GFF2958 - Molybdenum transport system permease protein ModB, at 331,918 to 332,598 GFF2958 Position (kb) 329 330 331 332Strain fitness (log2 ratio) -2 -1 0 1at 328.965 kb on + strand, within GFF2955at 328.983 kb on + strand, within GFF2955at 328.983 kb on + strand, within GFF2955at 328.983 kb on + strand, within GFF2955at 328.983 kb on + strand, within GFF2955at 328.983 kb on + strand, within GFF2955at 328.984 kb on - strand, within GFF2955at 328.984 kb on - strand, within GFF2955at 328.984 kb on - strand, within GFF2955at 328.984 kb on - strand, within GFF2955at 328.984 kb on - strand, within GFF2955at 329.116 kb on - strand, within GFF2955at 329.181 kb on + strand, within GFF2955at 329.247 kb on + strand, within GFF2955at 329.247 kb on + strand, within GFF2955at 329.247 kb on + strand, within GFF2955at 329.248 kb on - strand, within GFF2955at 329.248 kb on - strand, within GFF2955at 329.295 kb on + strand, within GFF2955at 329.295 kb on + strand, within GFF2955at 329.296 kb on - strand, within GFF2955at 329.343 kb on + strand, within GFF2955at 329.343 kb on + strand, within GFF2955at 329.343 kb on + strand, within GFF2955at 329.344 kb on - strand, within GFF2955at 329.344 kb on - strand, within GFF2955at 329.344 kb on - strand, within GFF2955at 329.400 kb on + strand, within GFF2955at 329.400 kb on + strand, within GFF2955at 329.412 kb on + strand, within GFF2955at 329.412 kb on + strand, within GFF2955at 329.413 kb on - strand, within GFF2955at 329.413 kb on - strand, within GFF2955at 329.533 kb on - strand, within GFF2955at 329.533 kb on - strand, within GFF2955at 329.563 kb on - strand, within GFF2955at 329.616 kb on + strandat 329.617 kb on - strandat 329.617 kb on - strandat 329.640 kb on + strandat 329.640 kb on + strandat 329.640 kb on + strandat 329.641 kb on - strandat 329.641 kb on - strandat 329.902 kb on + strandat 329.903 kb on - strandat 329.949 kb on + strandat 329.949 kb on + strandat 329.949 kb on + strandat 329.949 kb on + strandat 329.949 kb on + strandat 329.949 kb on + strandat 329.949 kb on + strandat 329.949 kb on + strandat 329.949 kb on + strandat 329.949 kb on + strandat 329.950 kb on - strandat 329.950 kb on - strandat 329.951 kb on + strandat 329.951 kb on + strandat 329.951 kb on + strandat 329.951 kb on + strandat 329.952 kb on - strandat 329.952 kb on - strandat 329.952 kb on - strandat 329.952 kb on - strandat 330.431 kb on + strand, within GFF2956at 330.432 kb on - strand, within GFF2956at 330.492 kb on + strand, within GFF2956at 330.492 kb on + strand, within GFF2956at 330.492 kb on + strand, within GFF2956at 330.493 kb on - strand, within GFF2956at 330.684 kb on + strand, within GFF2956at 330.685 kb on - strand, within GFF2956at 331.020 kb on + strandat 331.037 kb on + strandat 331.038 kb on - strandat 331.038 kb on - strandat 331.060 kb on + strandat 331.066 kb on + strandat 331.066 kb on + strandat 331.069 kb on - strandat 331.069 kb on - strandat 331.071 kb on - strandat 331.080 kb on + strandat 331.081 kb on - strandat 331.147 kb on + strandat 331.147 kb on + strandat 331.147 kb on + strandat 331.147 kb on + strandat 331.147 kb on + strandat 331.147 kb on + strandat 331.147 kb on + strandat 331.148 kb on - strandat 331.148 kb on - strandat 331.148 kb on - strandat 331.148 kb on - strandat 331.148 kb on - strandat 331.351 kb on + strand, within GFF2957at 331.352 kb on - strand, within GFF2957at 331.352 kb on - strand, within GFF2957at 331.462 kb on + strand, within GFF2957at 331.462 kb on + strand, within GFF2957at 331.463 kb on - strand, within GFF2957at 331.463 kb on - strand, within GFF2957at 331.463 kb on - strand, within GFF2957at 331.504 kb on + strand, within GFF2957at 331.505 kb on - strand, within GFF2957at 331.505 kb on - strand, within GFF2957at 331.505 kb on - strand, within GFF2957at 331.508 kb on + strand, within GFF2957at 331.508 kb on + strand, within GFF2957at 331.509 kb on - strand, within GFF2957at 331.509 kb on - strand, within GFF2957at 331.509 kb on - strand, within GFF2957at 331.509 kb on - strand, within GFF2957at 331.509 kb on - strand, within GFF2957at 331.544 kb on - strand, within GFF2957at 331.544 kb on - strand, within GFF2957at 331.675 kb on + strand, within GFF2957at 331.861 kb on + strandat 331.861 kb on + strandat 331.861 kb on + strandat 331.906 kb on + strandat 331.906 kb on + strandat 331.915 kb on + strandat 331.915 kb on + strandat 331.916 kb on - strandat 331.916 kb on - strandat 331.916 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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328,965 + GFF2955 0.64 -1.5
328,983 + GFF2955 0.65 -2.0
328,983 + GFF2955 0.65 +0.3
328,983 + GFF2955 0.65 +0.7
328,983 + GFF2955 0.65 -0.5
328,983 + GFF2955 0.65 -0.2
328,984 - GFF2955 0.65 -0.1
328,984 - GFF2955 0.65 +0.4
328,984 - GFF2955 0.65 +0.4
328,984 - GFF2955 0.65 +0.4
328,984 - GFF2955 0.65 +0.1
329,116 - GFF2955 0.70 -0.6
329,181 + GFF2955 0.73 +0.5
329,247 + GFF2955 0.75 -1.0
329,247 + GFF2955 0.75 +0.4
329,247 + GFF2955 0.75 -0.4
329,248 - GFF2955 0.76 +0.2
329,248 - GFF2955 0.76 -0.6
329,295 + GFF2955 0.77 +0.5
329,295 + GFF2955 0.77 -1.0
329,296 - GFF2955 0.77 -0.6
329,343 + GFF2955 0.79 +0.3
329,343 + GFF2955 0.79 +0.4
329,343 + GFF2955 0.79 +0.3
329,344 - GFF2955 0.79 +0.1
329,344 - GFF2955 0.79 +0.1
329,344 - GFF2955 0.79 +0.8
329,400 + GFF2955 0.82 +1.1
329,400 + GFF2955 0.82 +0.4
329,412 + GFF2955 0.82 -1.3
329,412 + GFF2955 0.82 -0.2
329,413 - GFF2955 0.82 -0.4
329,413 - GFF2955 0.82 -1.1
329,533 - GFF2955 0.87 -0.0
329,533 - GFF2955 0.87 +0.8
329,563 - GFF2955 0.88 -1.1
329,616 + +0.1
329,617 - +0.3
329,617 - +0.0
329,640 + -0.7
329,640 + +0.7
329,640 + +0.2
329,641 - -0.8
329,641 - -1.4
329,902 + -0.1
329,903 - +1.0
329,949 + -0.7
329,949 + -1.0
329,949 + +0.8
329,949 + +0.1
329,949 + -0.6
329,949 + -0.5
329,949 + +0.4
329,949 + -0.7
329,949 + +0.1
329,949 + -1.6
329,950 - -0.2
329,950 - -0.6
329,951 + +0.2
329,951 + -0.6
329,951 + -0.4
329,951 + -1.7
329,952 - +0.3
329,952 - -0.2
329,952 - -1.0
329,952 - +0.3
330,431 + GFF2956 0.45 -0.4
330,432 - GFF2956 0.45 +0.4
330,492 + GFF2956 0.51 -0.7
330,492 + GFF2956 0.51 -2.6
330,492 + GFF2956 0.51 +0.0
330,493 - GFF2956 0.51 +0.5
330,684 + GFF2956 0.69 -0.7
330,685 - GFF2956 0.69 -1.1
331,020 + -1.2
331,037 + -0.2
331,038 - +0.2
331,038 - -0.6
331,060 + +0.6
331,066 + -0.4
331,066 + -0.3
331,069 - +0.8
331,069 - -1.6
331,071 - +0.1
331,080 + -0.2
331,081 - -0.3
331,147 + -0.7
331,147 + -0.2
331,147 + -0.9
331,147 + -0.3
331,147 + -0.5
331,147 + +0.4
331,147 + +0.5
331,148 - +0.2
331,148 - +0.7
331,148 - +0.4
331,148 - -1.7
331,148 - -0.0
331,351 + GFF2957 0.26 -1.1
331,352 - GFF2957 0.26 +0.0
331,352 - GFF2957 0.26 +0.1
331,462 + GFF2957 0.41 -0.6
331,462 + GFF2957 0.41 -0.6
331,463 - GFF2957 0.41 -2.0
331,463 - GFF2957 0.41 -0.1
331,463 - GFF2957 0.41 +0.8
331,504 + GFF2957 0.46 +0.3
331,505 - GFF2957 0.46 +0.0
331,505 - GFF2957 0.46 +0.0
331,505 - GFF2957 0.46 -0.2
331,508 + GFF2957 0.47 -2.0
331,508 + GFF2957 0.47 -0.6
331,509 - GFF2957 0.47 -0.4
331,509 - GFF2957 0.47 +0.4
331,509 - GFF2957 0.47 -0.2
331,509 - GFF2957 0.47 -0.6
331,509 - GFF2957 0.47 -0.2
331,544 - GFF2957 0.51 +0.2
331,544 - GFF2957 0.51 -0.9
331,675 + GFF2957 0.68 +0.0
331,861 + +0.4
331,861 + +0.1
331,861 + +0.3
331,906 + +0.3
331,906 + +0.4
331,915 + -0.0
331,915 + +0.6
331,916 - -0.6
331,916 - +0.4
331,916 - -0.4

Or see this region's nucleotide sequence