Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2945 and GFF2946 are separated by 258 nucleotides GFF2946 and GFF2947 are separated by 143 nucleotides GFF2947 and GFF2948 are separated by 3 nucleotides GFF2948 and GFF2949 are separated by 72 nucleotides GFF2949 and GFF2950 are separated by 210 nucleotides GFF2950 and GFF2951 are separated by 28 nucleotides
GFF2945 - UTP--glucose-1-phosphate uridylyltransferase, at 321,332 to 322,171
GFF2945
GFF2946 - hypothetical protein, at 322,430 to 322,615
GFF2946
GFF2947 - hypothetical protein, at 322,759 to 323,046
GFF2947
GFF2948 - hypothetical protein, at 323,050 to 323,280
GFF2948
GFF2949 - hypothetical protein, at 323,353 to 323,709
GFF2949
GFF2950 - hypothetical protein, at 323,920 to 324,222
GFF2950
GFF2951 - hypothetical protein, at 324,251 to 324,421
GFF2951
Position (kb) 323
324 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 322.080 kb on - strand, within GFF2945 at 322.080 kb on - strand, within GFF2945 at 322.171 kb on + strand at 322.171 kb on + strand at 322.171 kb on + strand at 322.171 kb on + strand at 322.171 kb on + strand at 322.172 kb on - strand at 322.172 kb on - strand at 322.173 kb on + strand at 322.173 kb on + strand at 322.173 kb on + strand at 322.174 kb on - strand at 322.174 kb on - strand at 322.174 kb on - strand at 322.174 kb on - strand at 322.174 kb on - strand at 322.197 kb on - strand at 322.215 kb on + strand at 322.216 kb on - strand at 322.216 kb on - strand at 322.216 kb on - strand at 322.235 kb on + strand at 322.236 kb on - strand at 322.236 kb on - strand at 322.236 kb on - strand at 322.269 kb on + strand at 322.269 kb on + strand at 322.270 kb on - strand at 322.278 kb on - strand at 322.290 kb on - strand at 322.325 kb on + strand at 322.325 kb on + strand at 322.325 kb on + strand at 322.326 kb on - strand at 322.326 kb on - strand at 322.357 kb on - strand at 322.357 kb on - strand at 322.363 kb on - strand at 322.457 kb on + strand, within GFF2946 at 322.457 kb on + strand, within GFF2946 at 322.457 kb on + strand, within GFF2946 at 322.513 kb on + strand, within GFF2946 at 322.513 kb on + strand, within GFF2946 at 322.514 kb on - strand, within GFF2946 at 322.555 kb on - strand, within GFF2946 at 322.555 kb on - strand, within GFF2946 at 322.555 kb on - strand, within GFF2946 at 322.555 kb on - strand, within GFF2946 at 322.573 kb on + strand, within GFF2946 at 322.573 kb on + strand, within GFF2946 at 322.573 kb on + strand, within GFF2946 at 322.574 kb on - strand, within GFF2946 at 322.696 kb on + strand at 322.831 kb on + strand, within GFF2947 at 322.832 kb on - strand, within GFF2947 at 322.832 kb on - strand, within GFF2947 at 322.832 kb on - strand, within GFF2947 at 322.901 kb on - strand, within GFF2947 at 323.011 kb on + strand, within GFF2947 at 323.011 kb on + strand, within GFF2947 at 323.011 kb on + strand, within GFF2947 at 323.011 kb on + strand, within GFF2947 at 323.012 kb on - strand, within GFF2947 at 323.012 kb on - strand, within GFF2947 at 323.044 kb on + strand at 323.044 kb on + strand at 323.044 kb on + strand at 323.044 kb on + strand at 323.044 kb on + strand at 323.045 kb on - strand at 323.045 kb on - strand at 323.045 kb on - strand at 323.045 kb on - strand at 323.045 kb on - strand at 323.051 kb on + strand at 323.051 kb on + strand at 323.051 kb on + strand at 323.051 kb on + strand at 323.051 kb on + strand at 323.051 kb on + strand at 323.051 kb on + strand at 323.051 kb on + strand at 323.051 kb on + strand at 323.051 kb on + strand at 323.052 kb on - strand at 323.052 kb on - strand at 323.052 kb on - strand at 323.052 kb on - strand at 323.052 kb on - strand at 323.052 kb on - strand at 323.052 kb on - strand at 323.052 kb on - strand at 323.052 kb on - strand at 323.238 kb on + strand, within GFF2948 at 323.238 kb on + strand, within GFF2948 at 323.238 kb on + strand, within GFF2948 at 323.239 kb on - strand, within GFF2948 at 323.239 kb on - strand, within GFF2948 at 323.239 kb on - strand, within GFF2948 at 323.239 kb on - strand, within GFF2948 at 323.291 kb on + strand at 323.291 kb on + strand at 323.291 kb on + strand at 323.292 kb on - strand at 323.292 kb on - strand at 323.347 kb on - strand at 323.347 kb on - strand at 323.351 kb on + strand at 323.351 kb on + strand at 323.351 kb on + strand at 323.351 kb on + strand at 323.365 kb on - strand at 323.386 kb on + strand at 323.387 kb on - strand at 323.387 kb on - strand at 323.470 kb on + strand, within GFF2949 at 323.470 kb on + strand, within GFF2949 at 323.471 kb on - strand, within GFF2949 at 323.471 kb on - strand, within GFF2949 at 323.515 kb on + strand, within GFF2949 at 323.515 kb on + strand, within GFF2949 at 323.515 kb on + strand, within GFF2949 at 323.515 kb on + strand, within GFF2949 at 323.515 kb on + strand, within GFF2949 at 323.516 kb on - strand, within GFF2949 at 323.516 kb on - strand, within GFF2949 at 323.516 kb on - strand, within GFF2949 at 323.516 kb on - strand, within GFF2949 at 323.516 kb on - strand, within GFF2949 at 323.709 kb on + strand at 323.709 kb on + strand at 323.709 kb on + strand at 323.710 kb on - strand at 323.710 kb on - strand at 323.710 kb on - strand at 323.775 kb on + strand at 323.775 kb on + strand at 323.775 kb on + strand at 323.776 kb on - strand at 323.776 kb on - strand at 323.837 kb on + strand at 323.837 kb on + strand at 323.837 kb on + strand at 323.837 kb on + strand at 323.837 kb on + strand at 323.838 kb on - strand at 323.838 kb on - strand at 323.838 kb on - strand at 323.838 kb on - strand at 323.838 kb on - strand at 323.840 kb on + strand at 323.879 kb on + strand at 323.879 kb on + strand at 323.880 kb on - strand at 324.052 kb on + strand, within GFF2950 at 324.052 kb on + strand, within GFF2950 at 324.053 kb on - strand, within GFF2950 at 324.053 kb on - strand, within GFF2950 at 324.053 kb on - strand, within GFF2950 at 324.210 kb on + strand at 324.234 kb on + strand at 324.235 kb on - strand at 324.235 kb on - strand at 324.235 kb on - strand at 324.235 kb on - strand at 324.235 kb on - strand at 324.275 kb on + strand, within GFF2951 at 324.275 kb on + strand, within GFF2951 at 324.275 kb on + strand, within GFF2951 at 324.276 kb on - strand, within GFF2951 at 324.276 kb on - strand, within GFF2951 at 324.276 kb on - strand, within GFF2951 at 324.276 kb on - strand, within GFF2951
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 322,080 - GFF2945 0.89 -0.9 322,080 - GFF2945 0.89 -1.3 322,171 + -1.2 322,171 + -0.9 322,171 + -0.6 322,171 + -0.5 322,171 + -1.4 322,172 - -3.2 322,172 - -0.5 322,173 + -0.6 322,173 + +0.4 322,173 + -0.9 322,174 - -1.4 322,174 - -1.6 322,174 - -1.2 322,174 - -3.2 322,174 - -0.3 322,197 - -0.2 322,215 + -0.9 322,216 - -1.2 322,216 - -0.3 322,216 - -1.5 322,235 + -0.6 322,236 - -1.9 322,236 - +0.0 322,236 - -1.3 322,269 + +1.2 322,269 + -0.2 322,270 - -1.0 322,278 - +0.2 322,290 - -1.9 322,325 + +0.5 322,325 + -0.6 322,325 + +0.6 322,326 - -1.1 322,326 - -0.7 322,357 - +0.8 322,357 - -0.4 322,363 - +0.1 322,457 + GFF2946 0.15 -1.0 322,457 + GFF2946 0.15 -0.3 322,457 + GFF2946 0.15 +0.3 322,513 + GFF2946 0.45 +0.9 322,513 + GFF2946 0.45 -1.0 322,514 - GFF2946 0.45 +0.3 322,555 - GFF2946 0.67 -0.8 322,555 - GFF2946 0.67 -2.7 322,555 - GFF2946 0.67 -0.5 322,555 - GFF2946 0.67 -0.6 322,573 + GFF2946 0.77 -0.4 322,573 + GFF2946 0.77 +0.4 322,573 + GFF2946 0.77 -1.3 322,574 - GFF2946 0.77 -0.3 322,696 + +0.1 322,831 + GFF2947 0.25 -0.9 322,832 - GFF2947 0.25 -0.8 322,832 - GFF2947 0.25 +0.0 322,832 - GFF2947 0.25 -0.6 322,901 - GFF2947 0.49 +0.9 323,011 + GFF2947 0.88 -0.5 323,011 + GFF2947 0.88 +0.2 323,011 + GFF2947 0.88 -0.6 323,011 + GFF2947 0.88 -0.7 323,012 - GFF2947 0.88 -0.4 323,012 - GFF2947 0.88 -0.3 323,044 + -0.5 323,044 + -0.6 323,044 + -0.0 323,044 + +0.2 323,044 + +0.1 323,045 - +0.1 323,045 - -0.6 323,045 - +0.2 323,045 - -0.5 323,045 - +0.8 323,051 + -1.3 323,051 + +0.1 323,051 + -0.7 323,051 + +0.0 323,051 + +1.8 323,051 + -0.7 323,051 + +0.4 323,051 + -0.3 323,051 + -0.2 323,051 + -0.4 323,052 - +0.1 323,052 - +0.6 323,052 - -0.3 323,052 - -0.6 323,052 - -0.3 323,052 - +0.1 323,052 - +0.3 323,052 - +0.2 323,052 - +1.0 323,238 + GFF2948 0.81 -1.2 323,238 + GFF2948 0.81 +0.4 323,238 + GFF2948 0.81 -1.2 323,239 - GFF2948 0.82 -1.3 323,239 - GFF2948 0.82 -0.2 323,239 - GFF2948 0.82 -0.1 323,239 - GFF2948 0.82 -1.1 323,291 + -0.0 323,291 + -0.2 323,291 + -0.8 323,292 - -0.2 323,292 - -0.9 323,347 - -1.2 323,347 - -0.3 323,351 + -0.9 323,351 + +1.1 323,351 + +0.3 323,351 + -0.6 323,365 - +0.4 323,386 + -0.0 323,387 - -0.2 323,387 - -1.3 323,470 + GFF2949 0.33 +0.0 323,470 + GFF2949 0.33 -0.1 323,471 - GFF2949 0.33 -1.0 323,471 - GFF2949 0.33 +0.2 323,515 + GFF2949 0.45 -0.2 323,515 + GFF2949 0.45 -0.1 323,515 + GFF2949 0.45 -0.0 323,515 + GFF2949 0.45 -0.9 323,515 + GFF2949 0.45 +0.0 323,516 - GFF2949 0.46 -1.4 323,516 - GFF2949 0.46 -0.5 323,516 - GFF2949 0.46 -0.4 323,516 - GFF2949 0.46 -1.4 323,516 - GFF2949 0.46 -0.7 323,709 + +0.1 323,709 + -1.5 323,709 + +1.3 323,710 - -0.7 323,710 - -1.1 323,710 - -0.1 323,775 + -1.7 323,775 + -1.0 323,775 + -0.6 323,776 - +0.8 323,776 - -0.5 323,837 + -1.2 323,837 + +0.9 323,837 + +0.1 323,837 + +0.7 323,837 + -1.3 323,838 - -0.6 323,838 - -1.7 323,838 - +0.1 323,838 - -0.1 323,838 - -0.5 323,840 + -0.6 323,879 + +0.6 323,879 + -0.7 323,880 - -1.5 324,052 + GFF2950 0.44 -0.1 324,052 + GFF2950 0.44 -1.4 324,053 - GFF2950 0.44 +0.3 324,053 - GFF2950 0.44 +0.4 324,053 - GFF2950 0.44 +0.7 324,210 + +0.2 324,234 + -0.2 324,235 - -0.5 324,235 - +0.3 324,235 - -1.0 324,235 - -0.7 324,235 - -0.5 324,275 + GFF2951 0.14 -0.6 324,275 + GFF2951 0.14 +0.4 324,275 + GFF2951 0.14 -0.8 324,276 - GFF2951 0.15 -0.8 324,276 - GFF2951 0.15 -2.4 324,276 - GFF2951 0.15 +0.2 324,276 - GFF2951 0.15 -2.3
Or see this region's nucleotide sequence