Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2944 and GFF2945 are separated by 129 nucleotides GFF2945 and GFF2946 are separated by 258 nucleotides GFF2946 and GFF2947 are separated by 143 nucleotides GFF2947 and GFF2948 are separated by 3 nucleotides
GFF2944 - Glutathione amide reductase, at 319,844 to 321,202
GFF2944
GFF2945 - UTP--glucose-1-phosphate uridylyltransferase, at 321,332 to 322,171
GFF2945
GFF2946 - hypothetical protein, at 322,430 to 322,615
GFF2946
GFF2947 - hypothetical protein, at 322,759 to 323,046
GFF2947
GFF2948 - hypothetical protein, at 323,050 to 323,280
GFF2948
Position (kb) 321
322
323 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 320.334 kb on + strand, within GFF2944 at 320.334 kb on + strand, within GFF2944 at 320.335 kb on - strand, within GFF2944 at 320.485 kb on + strand, within GFF2944 at 320.485 kb on + strand, within GFF2944 at 320.486 kb on - strand, within GFF2944 at 320.616 kb on + strand, within GFF2944 at 320.616 kb on + strand, within GFF2944 at 320.675 kb on - strand, within GFF2944 at 320.675 kb on - strand, within GFF2944 at 320.675 kb on - strand, within GFF2944 at 320.676 kb on + strand, within GFF2944 at 320.677 kb on - strand, within GFF2944 at 320.818 kb on - strand, within GFF2944 at 320.818 kb on - strand, within GFF2944 at 320.910 kb on + strand, within GFF2944 at 320.910 kb on + strand, within GFF2944 at 321.180 kb on + strand at 321.180 kb on + strand at 321.181 kb on - strand at 321.181 kb on - strand at 321.181 kb on - strand at 321.267 kb on + strand at 321.267 kb on + strand at 321.267 kb on + strand at 321.267 kb on + strand at 321.267 kb on + strand at 321.267 kb on + strand at 321.267 kb on + strand at 321.267 kb on + strand at 321.267 kb on + strand at 321.267 kb on + strand at 321.267 kb on + strand at 321.268 kb on - strand at 321.268 kb on - strand at 321.268 kb on - strand at 321.268 kb on - strand at 321.268 kb on - strand at 321.268 kb on - strand at 321.268 kb on - strand at 321.268 kb on - strand at 321.268 kb on - strand at 321.268 kb on - strand at 321.268 kb on - strand at 321.268 kb on - strand at 321.268 kb on - strand at 321.268 kb on - strand at 321.268 kb on - strand at 321.268 kb on - strand at 321.269 kb on + strand at 321.269 kb on + strand at 321.269 kb on + strand at 321.269 kb on + strand at 321.269 kb on + strand at 321.269 kb on + strand at 321.269 kb on + strand at 321.270 kb on - strand at 321.270 kb on - strand at 321.270 kb on - strand at 321.270 kb on - strand at 321.270 kb on - strand at 321.270 kb on - strand at 321.270 kb on - strand at 321.270 kb on - strand at 321.270 kb on - strand at 321.336 kb on + strand at 321.337 kb on - strand at 321.337 kb on - strand at 321.390 kb on + strand at 321.390 kb on + strand at 321.390 kb on + strand at 321.390 kb on + strand at 321.390 kb on + strand at 321.391 kb on - strand at 321.391 kb on - strand at 321.435 kb on + strand, within GFF2945 at 321.435 kb on + strand, within GFF2945 at 321.552 kb on + strand, within GFF2945 at 321.553 kb on - strand, within GFF2945 at 321.553 kb on - strand, within GFF2945 at 321.605 kb on + strand, within GFF2945 at 321.605 kb on + strand, within GFF2945 at 321.606 kb on - strand, within GFF2945 at 321.606 kb on - strand, within GFF2945 at 321.606 kb on - strand, within GFF2945 at 321.624 kb on + strand, within GFF2945 at 321.625 kb on - strand, within GFF2945 at 321.625 kb on - strand, within GFF2945 at 321.656 kb on + strand, within GFF2945 at 321.656 kb on + strand, within GFF2945 at 321.663 kb on + strand, within GFF2945 at 321.663 kb on + strand, within GFF2945 at 321.663 kb on + strand, within GFF2945 at 321.663 kb on + strand, within GFF2945 at 321.664 kb on - strand, within GFF2945 at 321.664 kb on - strand, within GFF2945 at 321.664 kb on - strand, within GFF2945 at 321.726 kb on + strand, within GFF2945 at 321.726 kb on + strand, within GFF2945 at 321.727 kb on - strand, within GFF2945 at 321.727 kb on - strand, within GFF2945 at 321.727 kb on - strand, within GFF2945 at 321.727 kb on - strand, within GFF2945 at 321.727 kb on - strand, within GFF2945 at 321.876 kb on + strand, within GFF2945 at 321.876 kb on + strand, within GFF2945 at 321.877 kb on - strand, within GFF2945 at 321.877 kb on - strand, within GFF2945 at 321.921 kb on + strand, within GFF2945 at 321.921 kb on + strand, within GFF2945 at 321.921 kb on + strand, within GFF2945 at 321.921 kb on + strand, within GFF2945 at 321.922 kb on - strand, within GFF2945 at 321.963 kb on + strand, within GFF2945 at 321.963 kb on + strand, within GFF2945 at 321.963 kb on + strand, within GFF2945 at 321.963 kb on + strand, within GFF2945 at 321.963 kb on + strand, within GFF2945 at 321.964 kb on - strand, within GFF2945 at 322.080 kb on - strand, within GFF2945 at 322.080 kb on - strand, within GFF2945 at 322.171 kb on + strand at 322.171 kb on + strand at 322.171 kb on + strand at 322.171 kb on + strand at 322.171 kb on + strand at 322.172 kb on - strand at 322.172 kb on - strand at 322.173 kb on + strand at 322.173 kb on + strand at 322.173 kb on + strand at 322.174 kb on - strand at 322.174 kb on - strand at 322.174 kb on - strand at 322.174 kb on - strand at 322.174 kb on - strand at 322.197 kb on - strand at 322.215 kb on + strand at 322.216 kb on - strand at 322.216 kb on - strand at 322.216 kb on - strand at 322.235 kb on + strand at 322.236 kb on - strand at 322.236 kb on - strand at 322.236 kb on - strand at 322.269 kb on + strand at 322.269 kb on + strand at 322.270 kb on - strand at 322.278 kb on - strand at 322.290 kb on - strand at 322.325 kb on + strand at 322.325 kb on + strand at 322.325 kb on + strand at 322.326 kb on - strand at 322.326 kb on - strand at 322.357 kb on - strand at 322.357 kb on - strand at 322.363 kb on - strand at 322.457 kb on + strand, within GFF2946 at 322.457 kb on + strand, within GFF2946 at 322.457 kb on + strand, within GFF2946 at 322.513 kb on + strand, within GFF2946 at 322.513 kb on + strand, within GFF2946 at 322.514 kb on - strand, within GFF2946 at 322.555 kb on - strand, within GFF2946 at 322.555 kb on - strand, within GFF2946 at 322.555 kb on - strand, within GFF2946 at 322.555 kb on - strand, within GFF2946 at 322.573 kb on + strand, within GFF2946 at 322.573 kb on + strand, within GFF2946 at 322.573 kb on + strand, within GFF2946 at 322.574 kb on - strand, within GFF2946 at 322.696 kb on + strand at 322.831 kb on + strand, within GFF2947 at 322.832 kb on - strand, within GFF2947 at 322.832 kb on - strand, within GFF2947 at 322.832 kb on - strand, within GFF2947 at 322.901 kb on - strand, within GFF2947 at 323.011 kb on + strand, within GFF2947 at 323.011 kb on + strand, within GFF2947 at 323.011 kb on + strand, within GFF2947 at 323.011 kb on + strand, within GFF2947 at 323.012 kb on - strand, within GFF2947 at 323.012 kb on - strand, within GFF2947 at 323.044 kb on + strand at 323.044 kb on + strand at 323.044 kb on + strand at 323.044 kb on + strand at 323.044 kb on + strand at 323.045 kb on - strand at 323.045 kb on - strand at 323.045 kb on - strand at 323.045 kb on - strand at 323.045 kb on - strand at 323.051 kb on + strand at 323.051 kb on + strand at 323.051 kb on + strand at 323.051 kb on + strand at 323.051 kb on + strand at 323.051 kb on + strand at 323.051 kb on + strand at 323.051 kb on + strand at 323.051 kb on + strand at 323.051 kb on + strand at 323.052 kb on - strand at 323.052 kb on - strand at 323.052 kb on - strand at 323.052 kb on - strand at 323.052 kb on - strand at 323.052 kb on - strand at 323.052 kb on - strand at 323.052 kb on - strand at 323.052 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 320,334 + GFF2944 0.36 -0.0 320,334 + GFF2944 0.36 -1.0 320,335 - GFF2944 0.36 +1.4 320,485 + GFF2944 0.47 +0.3 320,485 + GFF2944 0.47 +1.0 320,486 - GFF2944 0.47 -1.4 320,616 + GFF2944 0.57 +0.1 320,616 + GFF2944 0.57 +1.4 320,675 - GFF2944 0.61 -0.1 320,675 - GFF2944 0.61 +0.0 320,675 - GFF2944 0.61 -0.9 320,676 + GFF2944 0.61 +0.1 320,677 - GFF2944 0.61 +0.0 320,818 - GFF2944 0.72 +1.4 320,818 - GFF2944 0.72 -1.4 320,910 + GFF2944 0.78 -1.5 320,910 + GFF2944 0.78 +0.3 321,180 + -0.1 321,180 + -0.2 321,181 - -0.3 321,181 - +0.2 321,181 - -1.2 321,267 + +1.1 321,267 + +0.0 321,267 + +0.5 321,267 + +0.7 321,267 + +0.0 321,267 + +0.5 321,267 + -0.4 321,267 + -0.9 321,267 + -0.1 321,267 + +0.5 321,267 + +0.2 321,268 - +0.7 321,268 - -0.7 321,268 - +0.4 321,268 - -1.7 321,268 - +0.3 321,268 - -1.4 321,268 - +0.2 321,268 - -1.2 321,268 - -0.2 321,268 - +0.2 321,268 - +0.4 321,268 - -0.6 321,268 - +0.1 321,268 - +1.1 321,268 - +0.4 321,268 - +0.4 321,269 + +0.7 321,269 + -0.5 321,269 + -0.9 321,269 + -0.6 321,269 + -1.3 321,269 + -1.0 321,269 + +0.3 321,270 - -0.2 321,270 - +0.2 321,270 - -0.6 321,270 - +0.3 321,270 - -0.3 321,270 - +0.4 321,270 - -1.3 321,270 - -0.7 321,270 - -0.3 321,336 + +0.6 321,337 - +0.8 321,337 - +0.1 321,390 + -0.7 321,390 + -0.6 321,390 + -2.4 321,390 + +0.4 321,390 + -0.8 321,391 - -1.4 321,391 - -1.3 321,435 + GFF2945 0.12 -1.0 321,435 + GFF2945 0.12 -0.9 321,552 + GFF2945 0.26 -1.4 321,553 - GFF2945 0.26 -1.8 321,553 - GFF2945 0.26 -2.2 321,605 + GFF2945 0.33 -1.7 321,605 + GFF2945 0.33 -1.6 321,606 - GFF2945 0.33 -2.4 321,606 - GFF2945 0.33 -2.8 321,606 - GFF2945 0.33 -2.4 321,624 + GFF2945 0.35 -0.4 321,625 - GFF2945 0.35 +0.4 321,625 - GFF2945 0.35 -1.4 321,656 + GFF2945 0.39 -0.6 321,656 + GFF2945 0.39 -1.2 321,663 + GFF2945 0.39 -1.6 321,663 + GFF2945 0.39 +0.1 321,663 + GFF2945 0.39 -1.4 321,663 + GFF2945 0.39 +0.2 321,664 - GFF2945 0.40 -0.5 321,664 - GFF2945 0.40 -0.4 321,664 - GFF2945 0.40 -0.6 321,726 + GFF2945 0.47 -0.6 321,726 + GFF2945 0.47 +0.1 321,727 - GFF2945 0.47 -1.2 321,727 - GFF2945 0.47 -1.5 321,727 - GFF2945 0.47 -2.2 321,727 - GFF2945 0.47 -0.4 321,727 - GFF2945 0.47 -0.6 321,876 + GFF2945 0.65 -1.4 321,876 + GFF2945 0.65 -1.5 321,877 - GFF2945 0.65 -1.0 321,877 - GFF2945 0.65 -0.9 321,921 + GFF2945 0.70 -0.8 321,921 + GFF2945 0.70 -0.9 321,921 + GFF2945 0.70 -0.6 321,921 + GFF2945 0.70 -1.7 321,922 - GFF2945 0.70 -2.3 321,963 + GFF2945 0.75 -1.2 321,963 + GFF2945 0.75 -2.0 321,963 + GFF2945 0.75 -2.2 321,963 + GFF2945 0.75 -1.1 321,963 + GFF2945 0.75 -0.6 321,964 - GFF2945 0.75 -1.8 322,080 - GFF2945 0.89 -0.9 322,080 - GFF2945 0.89 -1.3 322,171 + -1.2 322,171 + -0.9 322,171 + -0.6 322,171 + -0.5 322,171 + -1.4 322,172 - -3.2 322,172 - -0.5 322,173 + -0.6 322,173 + +0.4 322,173 + -0.9 322,174 - -1.4 322,174 - -1.6 322,174 - -1.2 322,174 - -3.2 322,174 - -0.3 322,197 - -0.2 322,215 + -0.9 322,216 - -1.2 322,216 - -0.3 322,216 - -1.5 322,235 + -0.6 322,236 - -1.9 322,236 - +0.0 322,236 - -1.3 322,269 + +1.2 322,269 + -0.2 322,270 - -1.0 322,278 - +0.2 322,290 - -1.9 322,325 + +0.5 322,325 + -0.6 322,325 + +0.6 322,326 - -1.1 322,326 - -0.7 322,357 - +0.8 322,357 - -0.4 322,363 - +0.1 322,457 + GFF2946 0.15 -1.0 322,457 + GFF2946 0.15 -0.3 322,457 + GFF2946 0.15 +0.3 322,513 + GFF2946 0.45 +0.9 322,513 + GFF2946 0.45 -1.0 322,514 - GFF2946 0.45 +0.3 322,555 - GFF2946 0.67 -0.8 322,555 - GFF2946 0.67 -2.7 322,555 - GFF2946 0.67 -0.5 322,555 - GFF2946 0.67 -0.6 322,573 + GFF2946 0.77 -0.4 322,573 + GFF2946 0.77 +0.4 322,573 + GFF2946 0.77 -1.3 322,574 - GFF2946 0.77 -0.3 322,696 + +0.1 322,831 + GFF2947 0.25 -0.9 322,832 - GFF2947 0.25 -0.8 322,832 - GFF2947 0.25 +0.0 322,832 - GFF2947 0.25 -0.6 322,901 - GFF2947 0.49 +0.9 323,011 + GFF2947 0.88 -0.5 323,011 + GFF2947 0.88 +0.2 323,011 + GFF2947 0.88 -0.6 323,011 + GFF2947 0.88 -0.7 323,012 - GFF2947 0.88 -0.4 323,012 - GFF2947 0.88 -0.3 323,044 + -0.5 323,044 + -0.6 323,044 + -0.0 323,044 + +0.2 323,044 + +0.1 323,045 - +0.1 323,045 - -0.6 323,045 - +0.2 323,045 - -0.5 323,045 - +0.8 323,051 + -1.3 323,051 + +0.1 323,051 + -0.7 323,051 + +0.0 323,051 + +1.8 323,051 + -0.7 323,051 + +0.4 323,051 + -0.3 323,051 + -0.2 323,051 + -0.4 323,052 - +0.1 323,052 - +0.6 323,052 - -0.3 323,052 - -0.6 323,052 - -0.3 323,052 - +0.1 323,052 - +0.3 323,052 - +0.2 323,052 - +1.0
Or see this region's nucleotide sequence