Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2676 and GFF2677 are separated by 574 nucleotides GFF2677 and GFF2678 are separated by 164 nucleotides GFF2678 and GFF2679 are separated by 183 nucleotides
GFF2676 - putative allantoin permease, at 473,355 to 474,893
GFF2676
GFF2677 - Phosphoadenosine phosphosulfate reductase, at 475,468 to 476,208
GFF2677
GFF2678 - Phosphoserine phosphatase, at 476,373 to 476,990
GFF2678
GFF2679 - Aminodeoxychorismate synthase component 1, at 477,174 to 478,517
GFF2679
Position (kb) 475
476
477 Strain fitness (log2 ratio) -2
-1
0
1 at 474.574 kb on + strand, within GFF2676 at 474.575 kb on - strand, within GFF2676 at 474.598 kb on + strand, within GFF2676 at 474.599 kb on - strand, within GFF2676 at 474.599 kb on - strand, within GFF2676 at 474.599 kb on - strand, within GFF2676 at 474.661 kb on + strand, within GFF2676 at 474.662 kb on - strand, within GFF2676 at 474.662 kb on - strand, within GFF2676 at 474.682 kb on + strand, within GFF2676 at 474.730 kb on + strand, within GFF2676 at 474.731 kb on - strand, within GFF2676 at 474.872 kb on + strand at 474.873 kb on - strand at 474.887 kb on + strand at 474.887 kb on + strand at 474.887 kb on + strand at 474.888 kb on - strand at 474.888 kb on - strand at 474.888 kb on - strand at 474.888 kb on - strand at 475.007 kb on + strand at 475.113 kb on + strand at 475.114 kb on - strand at 475.156 kb on - strand at 475.178 kb on - strand at 475.180 kb on - strand at 475.180 kb on - strand at 475.180 kb on - strand at 475.299 kb on - strand at 475.299 kb on - strand at 475.327 kb on + strand at 475.351 kb on + strand at 475.351 kb on + strand at 475.351 kb on + strand at 475.351 kb on + strand at 475.351 kb on + strand at 475.351 kb on + strand at 475.351 kb on + strand at 475.351 kb on + strand at 475.351 kb on + strand at 475.352 kb on - strand at 475.352 kb on - strand at 475.455 kb on + strand at 475.455 kb on + strand at 475.457 kb on + strand at 475.458 kb on - strand at 475.491 kb on + strand at 475.491 kb on + strand at 475.632 kb on + strand, within GFF2677 at 475.633 kb on - strand, within GFF2677 at 475.634 kb on + strand, within GFF2677 at 475.634 kb on + strand, within GFF2677 at 475.635 kb on - strand, within GFF2677 at 475.658 kb on + strand, within GFF2677 at 475.658 kb on + strand, within GFF2677 at 475.659 kb on - strand, within GFF2677 at 475.812 kb on + strand, within GFF2677 at 475.931 kb on + strand, within GFF2677 at 475.932 kb on - strand, within GFF2677 at 475.964 kb on + strand, within GFF2677 at 476.102 kb on - strand, within GFF2677 at 476.168 kb on + strand at 476.168 kb on + strand at 476.168 kb on + strand at 476.168 kb on + strand at 476.169 kb on - strand at 476.169 kb on - strand at 476.222 kb on + strand at 476.222 kb on + strand at 476.223 kb on - strand at 476.248 kb on + strand at 476.248 kb on + strand at 476.248 kb on + strand at 476.248 kb on + strand at 476.248 kb on + strand at 476.249 kb on - strand at 476.249 kb on - strand at 476.249 kb on - strand at 476.249 kb on - strand at 476.249 kb on - strand at 476.250 kb on + strand at 476.251 kb on - strand at 476.251 kb on - strand at 476.264 kb on + strand at 476.264 kb on + strand at 476.264 kb on + strand at 476.264 kb on + strand at 476.324 kb on - strand at 476.348 kb on + strand at 476.349 kb on - strand at 476.349 kb on - strand at 476.355 kb on + strand at 476.356 kb on - strand at 476.356 kb on - strand at 476.494 kb on + strand, within GFF2678 at 476.494 kb on + strand, within GFF2678 at 476.495 kb on - strand, within GFF2678 at 476.495 kb on - strand, within GFF2678 at 476.495 kb on - strand, within GFF2678 at 476.495 kb on - strand, within GFF2678 at 476.495 kb on - strand, within GFF2678 at 476.495 kb on - strand, within GFF2678 at 476.495 kb on - strand, within GFF2678 at 476.550 kb on - strand, within GFF2678 at 476.745 kb on + strand, within GFF2678 at 476.745 kb on + strand, within GFF2678 at 476.802 kb on + strand, within GFF2678 at 476.802 kb on + strand, within GFF2678 at 476.803 kb on - strand, within GFF2678 at 476.803 kb on - strand, within GFF2678 at 476.803 kb on - strand, within GFF2678 at 476.805 kb on + strand, within GFF2678 at 476.806 kb on - strand, within GFF2678 at 476.832 kb on + strand, within GFF2678 at 476.832 kb on + strand, within GFF2678 at 476.833 kb on - strand, within GFF2678 at 476.896 kb on + strand, within GFF2678 at 476.896 kb on + strand, within GFF2678 at 476.896 kb on + strand, within GFF2678 at 476.897 kb on - strand, within GFF2678 at 476.897 kb on - strand, within GFF2678 at 476.897 kb on - strand, within GFF2678 at 476.897 kb on - strand, within GFF2678 at 476.897 kb on - strand, within GFF2678 at 476.930 kb on + strand at 476.930 kb on + strand at 476.930 kb on + strand at 476.930 kb on + strand at 476.930 kb on + strand at 476.930 kb on + strand at 476.930 kb on + strand at 476.930 kb on + strand at 476.930 kb on + strand at 476.930 kb on + strand at 476.931 kb on - strand at 476.931 kb on - strand at 476.931 kb on - strand at 476.931 kb on - strand at 476.931 kb on - strand at 476.931 kb on - strand at 476.931 kb on - strand at 476.931 kb on - strand at 476.931 kb on - strand at 476.970 kb on - strand at 476.973 kb on - strand at 476.973 kb on - strand at 476.973 kb on - strand at 476.973 kb on - strand at 476.988 kb on + strand at 476.988 kb on + strand at 476.988 kb on + strand at 476.988 kb on + strand at 476.989 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 474,574 + GFF2676 0.79 +0.3 474,575 - GFF2676 0.79 -0.0 474,598 + GFF2676 0.81 +0.1 474,599 - GFF2676 0.81 +0.4 474,599 - GFF2676 0.81 +0.1 474,599 - GFF2676 0.81 -0.2 474,661 + GFF2676 0.85 -0.4 474,662 - GFF2676 0.85 -1.0 474,662 - GFF2676 0.85 +0.3 474,682 + GFF2676 0.86 +1.0 474,730 + GFF2676 0.89 +0.7 474,731 - GFF2676 0.89 +0.1 474,872 + -2.3 474,873 - -0.7 474,887 + -0.7 474,887 + +0.6 474,887 + +0.8 474,888 - +0.4 474,888 - -0.2 474,888 - -0.8 474,888 - +0.6 475,007 + -0.1 475,113 + -0.0 475,114 - +0.6 475,156 - -0.1 475,178 - +0.3 475,180 - -0.5 475,180 - -0.1 475,180 - +1.4 475,299 - +0.3 475,299 - -0.4 475,327 + -1.2 475,351 + +0.8 475,351 + +0.3 475,351 + +0.6 475,351 + +1.4 475,351 + +1.3 475,351 + -0.1 475,351 + +0.8 475,351 + -0.1 475,351 + +1.4 475,352 - -1.5 475,352 - +0.2 475,455 + -0.2 475,455 + -0.7 475,457 + -0.0 475,458 - -0.2 475,491 + +0.1 475,491 + +1.1 475,632 + GFF2677 0.22 -1.6 475,633 - GFF2677 0.22 -1.3 475,634 + GFF2677 0.22 -1.1 475,634 + GFF2677 0.22 -0.4 475,635 - GFF2677 0.23 +0.3 475,658 + GFF2677 0.26 +0.4 475,658 + GFF2677 0.26 -1.0 475,659 - GFF2677 0.26 -1.0 475,812 + GFF2677 0.46 +0.6 475,931 + GFF2677 0.62 -0.4 475,932 - GFF2677 0.63 -1.1 475,964 + GFF2677 0.67 -1.5 476,102 - GFF2677 0.86 +1.0 476,168 + -0.8 476,168 + +1.2 476,168 + +0.0 476,168 + -0.7 476,169 - +0.0 476,169 - +1.0 476,222 + -0.1 476,222 + -1.2 476,223 - -0.6 476,248 + +0.1 476,248 + -0.4 476,248 + -0.2 476,248 + +0.4 476,248 + -0.2 476,249 - -0.4 476,249 - +0.0 476,249 - -1.0 476,249 - -0.0 476,249 - +0.3 476,250 + +0.4 476,251 - -0.1 476,251 - -0.5 476,264 + -0.4 476,264 + +0.6 476,264 + -1.1 476,264 + -1.6 476,324 - -0.6 476,348 + +0.5 476,349 - -0.8 476,349 - +0.0 476,355 + +0.1 476,356 - -0.2 476,356 - +0.2 476,494 + GFF2678 0.20 +0.6 476,494 + GFF2678 0.20 +0.0 476,495 - GFF2678 0.20 -1.0 476,495 - GFF2678 0.20 -1.6 476,495 - GFF2678 0.20 -0.2 476,495 - GFF2678 0.20 -1.3 476,495 - GFF2678 0.20 -1.2 476,495 - GFF2678 0.20 +0.2 476,495 - GFF2678 0.20 +0.6 476,550 - GFF2678 0.29 +0.3 476,745 + GFF2678 0.60 -0.1 476,745 + GFF2678 0.60 -1.7 476,802 + GFF2678 0.69 -1.0 476,802 + GFF2678 0.69 +0.2 476,803 - GFF2678 0.70 +0.2 476,803 - GFF2678 0.70 +0.4 476,803 - GFF2678 0.70 -2.1 476,805 + GFF2678 0.70 -0.1 476,806 - GFF2678 0.70 +0.7 476,832 + GFF2678 0.74 +0.5 476,832 + GFF2678 0.74 +0.1 476,833 - GFF2678 0.74 +0.2 476,896 + GFF2678 0.85 -0.4 476,896 + GFF2678 0.85 +0.8 476,896 + GFF2678 0.85 +1.4 476,897 - GFF2678 0.85 +0.6 476,897 - GFF2678 0.85 +0.5 476,897 - GFF2678 0.85 -0.6 476,897 - GFF2678 0.85 +0.2 476,897 - GFF2678 0.85 -1.0 476,930 + +0.2 476,930 + -0.4 476,930 + -1.2 476,930 + -0.2 476,930 + -0.8 476,930 + +0.3 476,930 + -0.8 476,930 + +0.1 476,930 + +0.7 476,930 + -0.1 476,931 - -1.2 476,931 - +1.6 476,931 - -1.1 476,931 - -1.3 476,931 - +0.0 476,931 - -0.9 476,931 - -0.7 476,931 - +0.7 476,931 - -0.6 476,970 - -0.4 476,973 - -0.0 476,973 - -0.6 476,973 - +0.9 476,973 - -1.0 476,988 + -1.0 476,988 + -0.7 476,988 + +0.5 476,988 + +0.0 476,989 - -0.1
Or see this region's nucleotide sequence