Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2640 and GFF2641 are separated by 71 nucleotides GFF2641 and GFF2642 are separated by 241 nucleotides GFF2642 and GFF2643 are separated by 288 nucleotides GFF2643 and GFF2644 are separated by 209 nucleotides
GFF2640 - hypothetical protein, at 440,377 to 440,907
GFF2640
GFF2641 - hypothetical protein, at 440,979 to 441,170
GFF2641
GFF2642 - Polyamine aminopropyltransferase, at 441,412 to 442,287
GFF2642
GFF2643 - hypothetical protein, at 442,576 to 442,809
GFF2643
GFF2644 - hypothetical protein, at 443,019 to 443,366
GFF2644
Position (kb) 441
442
443 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 440.473 kb on + strand, within GFF2640 at 440.518 kb on + strand, within GFF2640 at 440.518 kb on + strand, within GFF2640 at 440.519 kb on - strand, within GFF2640 at 440.602 kb on + strand, within GFF2640 at 440.602 kb on + strand, within GFF2640 at 440.602 kb on + strand, within GFF2640 at 440.603 kb on - strand, within GFF2640 at 440.603 kb on - strand, within GFF2640 at 440.709 kb on + strand, within GFF2640 at 440.710 kb on - strand, within GFF2640 at 440.710 kb on - strand, within GFF2640 at 440.752 kb on + strand, within GFF2640 at 440.809 kb on + strand, within GFF2640 at 440.892 kb on - strand at 440.947 kb on - strand at 440.963 kb on - strand at 441.042 kb on - strand, within GFF2641 at 441.289 kb on + strand at 441.289 kb on + strand at 441.343 kb on + strand at 441.343 kb on + strand at 441.343 kb on + strand at 441.344 kb on - strand at 441.344 kb on - strand at 441.344 kb on - strand at 441.344 kb on - strand at 441.344 kb on - strand at 441.344 kb on - strand at 441.605 kb on - strand, within GFF2642 at 441.605 kb on - strand, within GFF2642 at 441.687 kb on + strand, within GFF2642 at 441.687 kb on + strand, within GFF2642 at 441.802 kb on + strand, within GFF2642 at 441.802 kb on + strand, within GFF2642 at 441.940 kb on + strand, within GFF2642 at 441.941 kb on - strand, within GFF2642 at 442.093 kb on + strand, within GFF2642 at 442.094 kb on - strand, within GFF2642 at 442.094 kb on - strand, within GFF2642 at 442.094 kb on - strand, within GFF2642 at 442.141 kb on + strand, within GFF2642 at 442.207 kb on + strand at 442.207 kb on + strand at 442.207 kb on + strand at 442.207 kb on + strand at 442.207 kb on + strand at 442.208 kb on - strand at 442.208 kb on - strand at 442.208 kb on - strand at 442.249 kb on + strand at 442.249 kb on + strand at 442.249 kb on + strand at 442.249 kb on + strand at 442.249 kb on + strand at 442.250 kb on - strand at 442.250 kb on - strand at 442.306 kb on - strand at 442.306 kb on - strand at 442.306 kb on - strand at 442.306 kb on - strand at 442.335 kb on - strand at 442.434 kb on + strand at 442.435 kb on - strand at 442.476 kb on + strand at 442.476 kb on + strand at 442.477 kb on - strand at 442.515 kb on + strand at 442.536 kb on + strand at 442.536 kb on + strand at 442.536 kb on + strand at 442.536 kb on + strand at 442.537 kb on - strand at 442.542 kb on + strand at 442.542 kb on + strand at 442.543 kb on - strand at 442.543 kb on - strand at 442.543 kb on - strand at 442.543 kb on - strand at 442.553 kb on - strand at 442.863 kb on + strand at 442.863 kb on + strand at 442.863 kb on + strand at 442.895 kb on + strand at 442.895 kb on + strand at 442.915 kb on + strand at 442.915 kb on + strand at 442.915 kb on + strand at 442.915 kb on + strand at 442.915 kb on + strand at 442.916 kb on - strand at 442.916 kb on - strand at 442.916 kb on - strand at 442.916 kb on - strand at 442.916 kb on - strand at 442.916 kb on - strand at 442.916 kb on - strand at 442.950 kb on + strand at 442.953 kb on + strand at 442.953 kb on + strand at 442.957 kb on + strand at 442.958 kb on - strand at 442.994 kb on - strand at 443.031 kb on + strand at 443.031 kb on + strand at 443.031 kb on + strand at 443.031 kb on + strand at 443.032 kb on - strand at 443.032 kb on - strand at 443.032 kb on - strand at 443.241 kb on + strand, within GFF2644 at 443.241 kb on + strand, within GFF2644 at 443.241 kb on + strand, within GFF2644 at 443.241 kb on + strand, within GFF2644 at 443.241 kb on + strand, within GFF2644 at 443.242 kb on - strand, within GFF2644 at 443.242 kb on - strand, within GFF2644 at 443.242 kb on - strand, within GFF2644 at 443.242 kb on - strand, within GFF2644 at 443.250 kb on + strand, within GFF2644 at 443.250 kb on + strand, within GFF2644 at 443.250 kb on + strand, within GFF2644 at 443.250 kb on + strand, within GFF2644 at 443.251 kb on - strand, within GFF2644 at 443.251 kb on - strand, within GFF2644 at 443.251 kb on - strand, within GFF2644
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 440,473 + GFF2640 0.18 +1.4 440,518 + GFF2640 0.27 -0.1 440,518 + GFF2640 0.27 -0.8 440,519 - GFF2640 0.27 +0.4 440,602 + GFF2640 0.42 -0.9 440,602 + GFF2640 0.42 -2.4 440,602 + GFF2640 0.42 +0.7 440,603 - GFF2640 0.43 +1.0 440,603 - GFF2640 0.43 -0.7 440,709 + GFF2640 0.63 +1.4 440,710 - GFF2640 0.63 -1.7 440,710 - GFF2640 0.63 -0.6 440,752 + GFF2640 0.71 -0.2 440,809 + GFF2640 0.81 +0.4 440,892 - -0.0 440,947 - -0.4 440,963 - -0.2 441,042 - GFF2641 0.33 +0.3 441,289 + -0.3 441,289 + -1.4 441,343 + +0.1 441,343 + -1.5 441,343 + +0.0 441,344 - -0.4 441,344 - -0.0 441,344 - -0.9 441,344 - +0.0 441,344 - -0.5 441,344 - -0.0 441,605 - GFF2642 0.22 -1.0 441,605 - GFF2642 0.22 -0.4 441,687 + GFF2642 0.31 -0.5 441,687 + GFF2642 0.31 +0.9 441,802 + GFF2642 0.45 -1.7 441,802 + GFF2642 0.45 -0.7 441,940 + GFF2642 0.60 +0.2 441,941 - GFF2642 0.60 -1.8 442,093 + GFF2642 0.78 -0.9 442,094 - GFF2642 0.78 -0.4 442,094 - GFF2642 0.78 -1.2 442,094 - GFF2642 0.78 -2.8 442,141 + GFF2642 0.83 -2.0 442,207 + -1.9 442,207 + -2.1 442,207 + -2.3 442,207 + -1.7 442,207 + -1.0 442,208 - -3.0 442,208 - -2.0 442,208 - -0.4 442,249 + -0.6 442,249 + +0.6 442,249 + -1.1 442,249 + -0.6 442,249 + -1.5 442,250 - -3.1 442,250 - -1.5 442,306 - -0.0 442,306 - -0.3 442,306 - -0.2 442,306 - -0.8 442,335 - -0.9 442,434 + +0.0 442,435 - +0.7 442,476 + -0.7 442,476 + -1.0 442,477 - -0.6 442,515 + -1.7 442,536 + +0.7 442,536 + -0.3 442,536 + -0.3 442,536 + +0.5 442,537 - +0.3 442,542 + -0.6 442,542 + -0.2 442,543 - -0.3 442,543 - -0.0 442,543 - +0.1 442,543 - -0.6 442,553 - +0.0 442,863 + -0.8 442,863 + +0.1 442,863 + -0.1 442,895 + +0.3 442,895 + -0.6 442,915 + -2.3 442,915 + -0.1 442,915 + +0.5 442,915 + -0.6 442,915 + -1.6 442,916 - -0.1 442,916 - +1.1 442,916 - -0.2 442,916 - -0.4 442,916 - +0.6 442,916 - -0.5 442,916 - +0.6 442,950 + -1.2 442,953 + -0.8 442,953 + -0.5 442,957 + -0.7 442,958 - -0.6 442,994 - -0.8 443,031 + +0.3 443,031 + +0.1 443,031 + +0.9 443,031 + -0.2 443,032 - +0.1 443,032 - -0.0 443,032 - -0.8 443,241 + GFF2644 0.64 -0.3 443,241 + GFF2644 0.64 -0.7 443,241 + GFF2644 0.64 +0.5 443,241 + GFF2644 0.64 -0.4 443,241 + GFF2644 0.64 -0.5 443,242 - GFF2644 0.64 -0.5 443,242 - GFF2644 0.64 +0.3 443,242 - GFF2644 0.64 -0.3 443,242 - GFF2644 0.64 -0.7 443,250 + GFF2644 0.66 -0.5 443,250 + GFF2644 0.66 -0.4 443,250 + GFF2644 0.66 -2.0 443,250 + GFF2644 0.66 +0.6 443,251 - GFF2644 0.67 -0.7 443,251 - GFF2644 0.67 -0.2 443,251 - GFF2644 0.67 +1.8
Or see this region's nucleotide sequence