Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2625 and GFF2626 are separated by 74 nucleotides GFF2626 and GFF2627 are separated by 131 nucleotides GFF2627 and GFF2628 are separated by 239 nucleotides
GFF2625 - putative DNA endonuclease SmrA, at 428,023 to 428,580
GFF2625
GFF2626 - hypothetical protein, at 428,655 to 428,975
GFF2626
GFF2627 - hypothetical protein, at 429,107 to 429,697
GFF2627
GFF2628 - 50S ribosomal protein L3 glutamine methyltransferase, at 429,937 to 430,845
GFF2628
Position (kb) 429
430 Strain fitness (log2 ratio) -1
0
1
2 at 428.210 kb on - strand, within GFF2625 at 428.210 kb on - strand, within GFF2625 at 428.968 kb on - strand at 429.037 kb on + strand at 429.038 kb on - strand at 429.063 kb on + strand at 429.065 kb on + strand at 429.065 kb on + strand at 429.065 kb on + strand at 429.065 kb on + strand at 429.066 kb on - strand at 429.066 kb on - strand at 429.066 kb on - strand at 429.066 kb on - strand at 429.597 kb on + strand, within GFF2627 at 429.598 kb on - strand, within GFF2627 at 429.598 kb on - strand, within GFF2627 at 429.598 kb on - strand, within GFF2627 at 429.772 kb on - strand at 429.809 kb on - strand at 429.851 kb on + strand at 429.901 kb on + strand at 429.901 kb on + strand at 429.901 kb on + strand at 429.901 kb on + strand at 429.957 kb on + strand at 430.061 kb on + strand, within GFF2628 at 430.102 kb on + strand, within GFF2628 at 430.102 kb on + strand, within GFF2628 at 430.102 kb on + strand, within GFF2628 at 430.102 kb on + strand, within GFF2628 at 430.103 kb on - strand, within GFF2628 at 430.103 kb on - strand, within GFF2628 at 430.103 kb on - strand, within GFF2628 at 430.103 kb on - strand, within GFF2628 at 430.103 kb on - strand, within GFF2628 at 430.103 kb on - strand, within GFF2628 at 430.391 kb on + strand, within GFF2628 at 430.391 kb on + strand, within GFF2628 at 430.391 kb on + strand, within GFF2628 at 430.391 kb on + strand, within GFF2628 at 430.392 kb on - strand, within GFF2628 at 430.392 kb on - strand, within GFF2628 at 430.392 kb on - strand, within GFF2628 at 430.392 kb on - strand, within GFF2628 at 430.471 kb on + strand, within GFF2628 at 430.471 kb on + strand, within GFF2628 at 430.472 kb on - strand, within GFF2628 at 430.472 kb on - strand, within GFF2628 at 430.473 kb on + strand, within GFF2628 at 430.473 kb on + strand, within GFF2628 at 430.473 kb on + strand, within GFF2628 at 430.474 kb on - strand, within GFF2628 at 430.583 kb on - strand, within GFF2628
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 428,210 - GFF2625 0.34 +0.5 428,210 - GFF2625 0.34 +0.6 428,968 - -0.8 429,037 + +0.3 429,038 - +0.4 429,063 + +0.0 429,065 + +0.0 429,065 + -0.1 429,065 + +0.4 429,065 + -0.4 429,066 - -1.5 429,066 - +0.5 429,066 - -0.1 429,066 - +0.3 429,597 + GFF2627 0.83 -1.5 429,598 - GFF2627 0.83 +0.2 429,598 - GFF2627 0.83 -1.3 429,598 - GFF2627 0.83 +0.0 429,772 - -1.2 429,809 - -0.6 429,851 + -0.4 429,901 + +0.1 429,901 + +0.7 429,901 + +0.1 429,901 + -1.3 429,957 + +0.4 430,061 + GFF2628 0.14 +1.1 430,102 + GFF2628 0.18 +0.6 430,102 + GFF2628 0.18 +0.6 430,102 + GFF2628 0.18 +0.3 430,102 + GFF2628 0.18 -0.3 430,103 - GFF2628 0.18 -0.7 430,103 - GFF2628 0.18 -0.2 430,103 - GFF2628 0.18 -0.7 430,103 - GFF2628 0.18 -0.1 430,103 - GFF2628 0.18 -0.2 430,103 - GFF2628 0.18 +0.8 430,391 + GFF2628 0.50 +1.3 430,391 + GFF2628 0.50 +0.2 430,391 + GFF2628 0.50 +0.8 430,391 + GFF2628 0.50 -0.6 430,392 - GFF2628 0.50 -0.5 430,392 - GFF2628 0.50 +0.4 430,392 - GFF2628 0.50 +0.6 430,392 - GFF2628 0.50 -0.4 430,471 + GFF2628 0.59 +0.5 430,471 + GFF2628 0.59 -0.4 430,472 - GFF2628 0.59 -0.4 430,472 - GFF2628 0.59 -1.0 430,473 + GFF2628 0.59 +0.9 430,473 + GFF2628 0.59 -1.1 430,473 + GFF2628 0.59 -0.5 430,474 - GFF2628 0.59 -0.4 430,583 - GFF2628 0.71 +2.0
Or see this region's nucleotide sequence